Array 1 384763-385668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012805.1 Streptococcus anginosus strain J4211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 384763 37 94.6 34 ....A........G....................... TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 384835 37 94.6 34 ....A........G....................... AAGTTGCTGAAATTTTAGCTGATACGATAACTGC 384908 37 94.6 37 ....A........G....................... TTTTCTTTTGAGGGTCAATATAGCGTACCATTATTAG 384981 37 94.6 36 ....A........G....................... CTATCGATTTTGTTTCTAAATTAACAAAAATATACA 385056 37 91.9 35 ....A........G.........A............. TTTATGTGTGTAACGTTTATTAATTCTAAAATTGA 385128 37 94.6 35 ....A........G....................... AAGAAATTCTAATACGGTAACAGTGGTAACGCCAG 385200 37 100.0 34 ..................................... TGTCTGTCCTACCAGTCAATGAAAGCCCTACTTA 385271 37 100.0 37 ..................................... CTATAAGGTCTAATACAGTCATAAGATGTTTTAAAAT 385345 37 100.0 35 ..................................... AATATAATGAATCAATTTTCCCGTATTCTTATCTT 385417 37 100.0 34 ..................................... TAAGGACACGTGGTTCAATAAATGATAGCATATA 385488 37 100.0 35 ..................................... AATATAATGAATCAATTTTCCCGTATTCTTATCTT 385560 37 100.0 36 ..................................... TCTCTTTACCTTGCAACTTACGGACTTTAATATCCG 385633 36 91.9 0 ...............................-A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 96.7 35 GTTAGTAACCCATATTACCTCGAGAGGGGACGGAAAC # Left flank : TTGATTCGTTGTTTTGAAACGGAGAATCATAAGGAATTTTTAAGCGGGTATACGGGAGAATAATAATGGGATTTTTTTACAACTTAGACGAAGAGGCGAAAAACTTTGCGCAGAAAAAAACGGTATTTTGCCTTGTTATTTATGATATTATTAGTAATAAGCGACGTCTCAAACTTTCTAAATTGCTGGAAGGATATGGCATGCGAGTCCAACGTTCTTGTTTTGAGATTGATGTTGAAAAAACAAACTATCATCACCTTCTTCAAGATTTAGAAAAATTTTATTGTCAGGAGGAGGGAGACAATATAATTGTTTATGTTGGTGATAAGAAAGAGACAGTCATCTTCAACTCTTATGAAGGAGCAGAAATTCTGGAAGATATTTTGTTTTTCTGAAACTTTTAATTTAATGAAAAATGTGGTAAAATATAGATATGTTTCCAAATCTTGAATAAAACAAGATTTAGGGGTCATTCTCTGAAGCTTGATACAAGATATAGG # Right flank : TAGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAAACAAAGGCTGTCTATTTTTTGTAAAAAACCCGAAATTTTAGTATAATGAAAAGACTAGAAGTATGAGGTAATGCCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAAATCACAATAAAATTAGAGGATTTAGAGGAACGTGGGATGGAAATGGCAGATTTTCTAGTCCCACAAGAAAAAACAGAAGAGTTTTTCTATGCGATTTTAGATGAGTTGGAAATGCCAGAGAGCTTTTTAGATAGCGGCATGCTCAGTTTTCGTGTGACACCAAAGCCCGACCGATTGGATGTCTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGATGATTTGGCAGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCTGATGAATTTTTAAAGACAT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCCATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 910140-911363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012805.1 Streptococcus anginosus strain J4211 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 910140 36 100.0 30 .................................... TCACTTCATTTTATATATATTATTATATCA 910206 36 100.0 30 .................................... CTAAATAAGTGAGGTATGTCGAATGGATCA 910272 36 100.0 30 .................................... CCTTAACGTTTAACTATGCGGAGTGGTTGG 910338 36 100.0 30 .................................... AGGCTCGTGAAGCTGGAGATGCAAGTGCAG 910404 36 100.0 30 .................................... GACGGCGGATATCTACACTCAACTTATAGG 910470 36 100.0 30 .................................... CAGACTAGTAAAGAAAAAGCAAGTACACTC 910536 36 100.0 30 .................................... ATGAAAAATTAGATACTGAAATTGAAAATA 910602 36 100.0 30 .................................... TATTGAGCGTAAACAGCAAGTAGAAGCCAA 910668 36 100.0 30 .................................... GAAAATAATAATCAACGTGATGACTTCTTT 910734 36 100.0 30 .................................... TGACGATTTCAACTCCTTCTATATCTGCCA 910800 36 100.0 30 .................................... TAGCTACCTCTTGACCACTTTCATCAAGTA 910866 36 100.0 30 .................................... AATCTATAACAAGCTAGAACAGCCAAGACA 910932 36 100.0 30 .................................... ATCTAAGTATAGACTATCTGTATCGCAGTA 910998 36 100.0 30 .................................... AATACGCAATGGAATGCGATGGTTTGGGAC 911064 36 100.0 30 .................................... ATAGTTAATGGTAAAAATTCCATATAACGA 911130 36 100.0 30 .................................... GAAAGTTACAGCAAATACTTTTGGAAATAA 911196 36 100.0 30 .................................... GAGGTGTTGGGATAATGGGTGTGGATACAG 911262 36 100.0 30 .................................... TTTTACATTTCTATAACAAATCGCGGTGAT 911328 35 77.8 0 ..................-AA..C.T.G.A.....T | C [911359] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TTACAGAACTCATTATTGGGCATTGTTTAATGTAAAAGAAATTTAATGAAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGTTGAAATGGTTTATAATGAAAAGTAACAAGTATATTAGGAGGTCGTCTAATGGAGAGAAAAATTAAAAAATCAGTAGTTGCGACCGGTTTAGCAGCAACCACTATTATTTCGGGCAGTTTATCACATCAAGTAAATGCTGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATACAAGCCGATGCTGCAAAGGTTCAAACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTCAAAGGAGATGTAAATACTTCAAAGGACGCGGTGGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 1299578-1299342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012805.1 Streptococcus anginosus strain J4211 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1299577 36 91.7 30 A.....AC............................ CGTTCTGAACGCAAGCAACTTGCTAAAGAG TT [1299568] 1299509 36 100.0 30 .................................... AAAATAAAGTTGTATACGACAAATACCAAG 1299443 36 100.0 30 .................................... CATCATGAGACAGTTACCTAAAGCTATTAG 1299377 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AAAGACTTCTAGCACATTGATTTCCAAGTCTGTTGCCAAAGACGGAGGTAAGACAGATTACCGCGGTCAAGTCCGTTTTGGCAAGAACAGTGCTGGTTCAAAGTCTCACATTGAGTGCGACACGATTCTTATGGATGGTGAATCCAGCTCAGATACCATTCCGTTTAATGAAATTCACAATTCAAATGTTGCACTTGAACACGAAGCTAAGGTTTCTAAGGTTTCAGAAGACCAGCTTTATTACCTTATGAGCCGCGGTATTAGCGAAGAAGAAGCAACTGCCATGATTATCAATGGCTTTATGGAGCCAATTACCAAAGAGCTCCCAATGGAGTACGCAGTTGAGCTCAACCAGCTCATCAACATGAGTATGGAAGGTTCTGTAGGATAAAAATAAAAACAGTCGTGAGGCTGTTTTTTTGTGCTCCTAATTGAAATAAGAGAAAGAAAAAAGCACCGAATCGGTGCTCACTTTTCAAGTTGGATACGGACAAAGCCTT # Right flank : ACAATACACTTTAATCATAGGACTTGCAAAATTTTTCAATCGTGCTATAATACTTTTTAGAGACATATCGCTGACTGGAATCTTTTAGAGAGCGCGTGGAGCTGAAAATCGCGCAGAGGAAGGCAGTTGAGACTACTCTGTTAGCTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTCGGGATGTCGTTTTTTTTATTTTGTTGAAGGGAGAAAAAGTTATGCTCTATATGATTGGCGGATCACCCTGCAGCGGGAAATCAACGCTCGCTTCCCTTCTTGCTCGGAAGTACGATTTGCTTCATATCAAGCTGGATGATTTGGTAGACGAGATGATGAGTCAAGCAAGTGTAGACTCACGACCGATTTGCCTTCTTAGACAGGACAGAAATCCGGAACAAATCTGGATGAGAAATCCAGAAGAGATG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //