Array 1 150624-151874 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOV01000002.1 Methylomonas sp. MK1 G006DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 150624 29 100.0 32 ............................. CGCGGCATTGAGCGGTGCCGGGCTGAAATGAA 150685 29 100.0 32 ............................. CAAATCAGCGACGTGGCCGACAAGGCGTTGAC 150746 29 100.0 32 ............................. GCGGCGTGCTGTCGTTTCCCAATGCGGTAGAC 150807 29 100.0 32 ............................. GCCGACAACCGTGCTCAGGCAAAAAAGGCGGC 150868 29 100.0 32 ............................. ACCGGAGTTTCTATCATCGCCGCACTGGTATA 150929 29 100.0 32 ............................. CCAACGGCGCCGTTGTTCCGGTTTCTAAATAT 150990 29 100.0 32 ............................. ACATCACCGCCAACATCGTGTTGGATTTGTCC 151051 29 100.0 32 ............................. AAAATTCCGGCCATCGTACTGCAATGGGGCCG 151112 29 100.0 32 ............................. CCTTGGTCGGTGTACGTAGGTTGCCGTTCGGT 151173 29 100.0 32 ............................. TCACCGCCGATCCGCGTCTGTTTAACCGGGTA 151234 29 100.0 32 ............................. CGATTGGCCGGGCACAGATACGCCTGCTGGCG 151295 29 100.0 32 ............................. GTCAGGCCAAACGAAAAAAGCGATGCAGACAG 151356 29 100.0 32 ............................. CCAAATCATGAATCACTTCATTTATCCCGTTA 151417 29 96.6 32 ............................A GTGACGGAAGGGGCGTTGACCGACGAAAACAC 151478 29 100.0 32 ............................. CCCGGGTTATCGGTGGCAATAGCCAGCGGTGC 151539 29 96.6 32 ............................C ACAACAGCATAACAACCGCTGGTCTGCGCTAA 151600 29 100.0 33 ............................. GAAATTGGCTTAACTCAGGAACAAGCACAAAAC 151662 29 96.6 32 ............................C ACAACAGCATAACAACCGCTGGTCTGCGCTAA 151723 29 100.0 33 ............................. GAAATTGGCTTAACTCAGGAACAAGCACAAAAC 151785 29 100.0 32 ............................. GCGGATTGGTCGGTATTGGCCGGCCGTCGGGT 151846 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGGCCATTCCCAATGCGGAGGGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTTCCGCCCCGGCTACGCGGCCGTTTGGCGGTGTGGCTGATCGAAATTCGCGCCGGGGTTTACGTCGGCGACTTGTCGGCCAAGGTGCGGGAGATGATCTGGTCGCAAGTCGAGCAGGGCTTAGAAGAGGGCAACGCTGTGATGGTATGGAGCACCAACACCGAATCCGGCTTCGACTTTTTAACGCTGGGCAAAAACCGCCGTCTGCCGGTGGAATTGGACGGATTGAAATTGGTGTCGTTTTTTCCGCCGGACGAAGCCGATTCGTCCGCCTCGCCCTCAGGGAAAGGGCCGGGGTGAGAGGGGAAAAATGCGTACTAAATTCCTGTTGGGGTATAGGGTGCTGTAAGGGGGCGCCCGCTTTTTAACAACTTGGAAAAGGTAAAAAATTCGGTAGAAATTTAGCCGGGTTATTTTTATATGCGTAACAATAAGTTACGATTAGT # Right flank : GCCCGCCGCGCTGACATTCTGACGCATCCACGCGCGTTCCCCCCCGGGGTTACTAGGAACAATCCGGTAGCAGGTTCCACCCGCTGAGGACCATCGCATCCCATATTAGCGGTCCACCGCGATACGCGCAGAGCACCCTGGTGCCTCCGCGACCCGGGAAACGTTCGGATGCCCCTTGTGACGCGTCCACCCGCGTGAACCGAACTCGCGCCATGCACCATCGGCTCCCCACCCGCGGGGAACAGTGAAACATTATGTCAATAACCCCCATTGCGTTCCCCACCCGGGGATGACCGTGCGGCTGCATCAAGAATATTGCGATTGCGTTTCCCACCCGCGGGATAACCGCCATATCGGTTAACGATGCCGTGTTAATGCGTTCCCCACCCGCGGGGATGAACCGATGATAGCCACTCGCTAGGTCCGCCGGGCGTTCCCCGCACCCGGGGGATGACATCAAGATCTTTTTTGACACAAATTACGCGTTCGCACCCGCGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152250-153591 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOV01000002.1 Methylomonas sp. MK1 G006DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152250 27 93.1 27 ........--................... ATGATAGCCACTCGCTAGGTCCGCCGG 152304 28 89.7 23 ................-.........T.A AGATCTTTTTTGACACAAATTAC C [152329] Deletion [152355] 152356 26 86.2 21 ......---...................A CATCCGCAAGACCGCAAAGAC Deletion [152403] 152403 28 96.6 33 ...-......................... CTTTATCGGGGCAGTCGGCAATCAGCTTTTCGA 152464 29 100.0 32 ............................. GTGGGCGCTCATTTAATTAGTATATAGCTATA 152525 29 100.0 32 ............................. GAACAGCGACACTTTAAGGACGAAAAAGGTAG 152586 29 100.0 32 ............................. TCAGGCGCAATCAATCGTTACAGATTGCTAGC 152647 29 100.0 32 ............................. ACAAAGCAGACTCCCCGCGAGCAGCATACCAA 152708 29 100.0 32 ............................. TTGGGGAAATGGTACCGATTGCTGCGTCTGCT 152769 29 100.0 32 ............................. GAACCAGAGGAACCATGTCCGATGTCATACTT 152830 29 100.0 32 ............................. ACCAACGAGTTCGCTATTATTATACTGGTGCC 152891 29 100.0 32 ............................. GACGGCCCCGCAATACTGCTTTGTGTAGGACT 152952 29 100.0 32 ............................. CTATGCGGTCAAACGCTGCGAGTGGCCACGGG 153013 29 100.0 32 ............................. ACGAGAGTCAACCAAATACTTATTCACTATAC 153074 29 100.0 33 ............................. GAATGCAGTTCATATTGCCTGCCACCGGCTCGA 153136 29 100.0 32 ............................. ATTGTTGATGAAATAAAACAAGAGCGAGGCAA 153197 29 100.0 32 ............................. GCTCCGGCAAATCATTGCGGAATACGCCTTAG 153258 29 100.0 32 ............................. TTAGCCGCTGACTCAGCGTTGCCAGCGTTGGT 153319 29 100.0 32 ............................. TCCTGCAAGGCTTCTTCCAGGAATGGCGTGAT 153380 29 100.0 32 ............................. AACAAAACGGTAAATGGTCGGTTCAGATCGAC 153441 29 100.0 32 ............................. AATCCTATCGCCAGTGCGTTGAATGCCGAGCA 153502 29 100.0 32 ............................. CGCAGCATGTTGCGCCATACCCGGTTGAACAA 153563 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.9 31 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGGAAATTGGCTTAACTCAGGAACAAGCACAAAACGCGTTCCCCGCACCCGCGGGGATGAACCGGCGGATTGGTCGGTATTGGCCGGCCGTCGGGTGCGTTCCCCGCACCCGCGGGGATGAACCGCCCGCCGCGCTGACATTCTGACGCATCCACGCGCGTTCCCCCCCGGGGTTACTAGGAACAATCCGGTAGCAGGTTCCACCCGCTGAGGACCATCGCATCCCATATTAGCGGTCCACCGCGATACGCGCAGAGCACCCTGGTGCCTCCGCGACCCGGGAAACGTTCGGATGCCCCTTGTGACGCGTCCACCCGCGTGAACCGAACTCGCGCCATGCACCATCGGCTCCCCACCCGCGGGGAACAGTGAAACATTATGTCAATAACCCCCATTGCGTTCCCCACCCGGGGATGACCGTGCGGCTGCATCAAGAATATTGCGATTGCGTTTCCCACCCGCGGGATAACCGCCATATCGGTTAACGATGCCGTGTTAAT # Right flank : ACTTGTTGTTGTCTTTCTTCATATTGATGCGTGGTTCTGTTGCAAGTGTCGATACATGGAGTACGGGGGGTATTCTGCCGCAACGGGTATTTCTGATCGGCTTACCGGCAGGGAAATTGCTAAAATGGCTTGTCGGCAGGCGAAGTGGATGATCTCCGGTATTCGTTGATTCGGTTTGTATTGGCTCGGTTCCCCGGGATTAGAAGAGGAATTTATATGATGTTGCAGCAAGGCTTCGCCGAAATTAACAGGGTCGATGCGCCGGATGTGATGGCCTTAAGCGGCCGCAAATGCCGCGGATTTGCTGTTGTCATTAACTTGATATGAACAATATTCCCCCCAAACGCGGCCTGGGCCGCGGGCTTGAAGCTTTATTAACCGATATGCCGGCTAAACCGGTAACGGATAAACAAAGGATTAAGGCTGATGCAGTGCCGGTGCGAGCCGTCCGCCAAGAAAATAGCCATTTGCTTCAAGAAGCCGAAGCTTTAAAGACCCTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 664679-669191 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOV01000002.1 Methylomonas sp. MK1 G006DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 664679 36 100.0 37 .................................... CCATTGCTCGGTTTCCGTAAACATGTTTGTTTGTGGA 664752 36 100.0 36 .................................... ACGTATATCATCGTCAATGTCCACCTTGTTCATCAC 664824 36 100.0 37 .................................... GATAGTTGCTGCGGGCGGTTACGGCGAGCTGGCTAAA 664897 36 100.0 37 .................................... TCTGCGCTGGGTTGAAGAGGGCTGGCTAGAAGCCACG 664970 36 100.0 35 .................................... ACCCTTGATCGAAGAAGCCGGGCGCTCTGGCAATC 665041 36 100.0 36 .................................... TGCAAGAAGTTGTTCCTCACGTATATGTGATAACTC 665113 36 100.0 37 .................................... GAACGTTGGGGAAAACAACCGTTTAAGCTTTGACTCG 665186 36 100.0 36 .................................... TAGTGCGTAAACGCGGAGGCTAGGCCATGGACGATA 665258 36 100.0 37 .................................... CGACACCCCCGGAGGGCTTATCATCCGCCGTCAACAT 665331 36 100.0 37 .................................... CTTGCATCTGGACAAGATTAGGTTTGGAAAAGGGGTT 665404 36 100.0 35 .................................... AAATCGAATCGGTTAAGGATGGGAAATATTACACC 665475 36 100.0 37 .................................... TTGTTGAAAAACTGCGTTTGAACAAAGCTACCGTGCT 665548 36 100.0 36 .................................... AGGTTGATGCAGTATTGTAGCGGCAAGATGGTTCAT 665620 36 100.0 39 .................................... GTTACTGCTTTGTCAGTCGTCTACGTCGGCATGATCACC 665695 36 100.0 35 .................................... ATGTTAGAGTTTGGCTAGCGGTAGGAGTTGTACCA 665766 36 100.0 37 .................................... ACGCGCCTTCGGATTTTCCCAGCCGTAGCGCTGGGCT 665839 36 100.0 36 .................................... GTCGTCGTATCCCGTTTGGATAGGACGGCCAAAGTT 665911 36 100.0 37 .................................... AGGTAATGCAGCATGGCGGTCTCCTCAAGATTCGCGT 665984 36 100.0 36 .................................... CCGCTTGATATTCAAGCTTTAAGAATGTCTCGGTAG 666056 36 100.0 36 .................................... AAACGGCTTAGCGTCGTTTCGGCTCACATAGCCGGC 666128 36 100.0 37 .................................... CGCCAGCAGCATGATGTACTGTTCCAGGCTGAGATTC 666201 36 100.0 35 .................................... TGGACAATTTCGAGCATTGCTCGGAGGAGGATAAG 666272 36 100.0 37 .................................... ATTCATTTGTTTGGTGAGCGCCATATGCTCCTGGGGT 666345 36 100.0 37 .................................... GACACATGGCCCAATTAAACAACATCCGCACCGTGTC 666418 36 100.0 35 .................................... TAATGCATACCCAGCCGCAGCGACGCCTGCACCCA 666489 36 100.0 37 .................................... CACTAGTTCGAACAACGTCGCTTGATCGGTGATGTAG 666562 36 100.0 36 .................................... ACGACTTGGGCCCGGACTTGGCCCCCGACTTGGCCC 666634 36 100.0 35 .................................... GACGTGATTCAATTCGAGCAGTAGGCCGTTTGGCA 666705 36 100.0 36 .................................... AACTTGGCCGGATTCAATAGCTGCGATGGCTTCGGC 666777 36 100.0 36 .................................... AACGCGTGCGTCGTTGCTGTTGAGGCCGCGCGGGAG 666849 36 100.0 36 .................................... GTACATGGTAGCTGCGATTCGATGTTGTAATGCGCA 666921 36 100.0 38 .................................... GCTCGTAATGTTCAGATTGCCGCCGAACGCCGCGCTAT 666995 36 100.0 35 .................................... AAGTACACACCGGCGGGCGGTGGGCGCGGCAACCG 667066 36 100.0 36 .................................... GAGTATTTCGGTGTGCAAAAAATACTGATACTGCAC 667138 36 100.0 39 .................................... CTGAAAGCCGCGGTCGTGATTATTGCGTATTTCAAAGAG 667213 36 100.0 36 .................................... AATTAATTGGCACATCATTCTCTACAAGACAACATT 667285 36 100.0 37 .................................... ATAGGAAAACTTTTATGAAAAGCACAGTCGTTGCGAA 667358 36 100.0 37 .................................... GGGCTACGCCGATAAAAACCCGCGTGAGCGGCTACGC 667431 36 100.0 35 .................................... GACATAGGTCAGCGCCTGCTCAATCCTGGCGCGTT 667502 36 100.0 35 .................................... TTAAGTACGCTGGACATTTCCAACAACGTTGATGT 667573 36 100.0 36 .................................... GAAAGGGTGGGGGCCGCTCGCCGTCGTATCGATCGC 667645 36 100.0 37 .................................... CCTTAACAGCGCCGTGTGATTTTTTAGAGCTATCGGT 667718 36 100.0 35 .................................... ATGTGCGTGCTACCTGCCTCGCTGATACGCATTGC 667789 36 100.0 37 .................................... CTGTACGGCGTAGAGTTTGCTGGAGGCGTGATAATTG 667862 36 100.0 35 .................................... GTGGGATCGTCGAAAATTTGCGCGGCTGAGCAAAA 667933 36 100.0 35 .................................... GCGCCGAAATGCTCGCCGCCTTCCGTGCCTGGCTG 668004 36 100.0 36 .................................... AACTGATTGGCTGGCTGTCGCACTGGCTTTATTACC 668076 36 100.0 35 .................................... CGGGTGTCGTTTGATATAGGCGGCAACAGTTTGAA 668147 36 100.0 36 .................................... AGCCAGGAGAACAGCAAACCGCTTACCGATAACGTG 668219 36 100.0 37 .................................... GTCTTTGTGAAACACTCTGGTAGTCCGTCTCAACAAC 668292 36 100.0 37 .................................... AAATCCTCGGTTTGCGTCTTCGCCAGGTCACCTATGT 668365 36 100.0 35 .................................... TTAATTTTTGATTGTTTGAAAGCGTCGATATTGTC 668436 36 100.0 35 .................................... AAGGCTTGTTGAGCGGCATGTTCGGCTTTAGTGGC 668507 36 100.0 36 .................................... AATGCTGACGCTGCCGTCTGGCTGATCGTCTAGGCT 668579 36 100.0 36 .................................... GCCGATGATTGCGCCGCGCTTGGGATCGAGTTACCC 668651 36 100.0 36 .................................... TGAGCGGCGCGGCTGGTGGGCCGATCCGGAAGCGGG 668723 36 100.0 36 .................................... TTGGCAATGGCTTTTTCCGCCAAATCCTTGATCGGC 668795 36 100.0 35 .................................... ATTGGAGTAACGCCAGAGCTTGCCGCGTAGTTCAG 668866 36 100.0 37 .................................... GCGAGTTGGATATGTTGAATAGCACGGTTGAGGCGGT 668939 36 100.0 38 .................................... ACTTGCAACCTGGGCGGCAAGCTCGATCGGCAGGCCGG 669013 36 100.0 37 .................................... TTTCGGTCTGTGTGCGCATTGATAGCCCCTCAATGAT 669086 36 100.0 36 .................................... TGGGATCGTTTCGGTGCCGCGATACTTATTTCGGTG 669158 34 80.6 0 ..........--.C.T.A..........G..A.... | ========== ====== ====== ====== ==================================== ======================================= ================== 63 36 99.7 36 GCATTCCCCGGCTACACGCCGGGGCCTCATTGAAGC # Left flank : TACGAACATCTGTATATCGTGACTTACGACATCAGCGATACCAAACGCTGGCGGCGGGTATTCCGGTTGATGAAAGGCTACGGCGATTGGCTGCAACTCTCGGTGTTTCAATGCCGGCTGAGCCGTAAGCGCCATGCGGAATTAATCGCGCTGTTGGACGGCATCATCCATCATAGCGACGACCATATCCTGATTATCAACGTCGGGCCGGCGGAAACGGTGAAGCCGTCGGTGGTCAGTTTGGGTAAGGATTTTGATGTGGTCGAACGGCAACCGGTGATCGTCTGATGCGGATGTTGTTCCGCCGCCGCTTAGCGAGCGCTGTAGTGGCGCGCAAAACCCGGTCAGCGTTCGCGTCGGGTAAGCTCTTTAAAAATCAGGATGTTATAAAAAACGTTAGGTTGGCAGCGTGCTTTTTGGGTACGCTTAGCACGCGTTGCGATACAGCTCTCGCAAACAGCCCGCGCAGGCCAGGCCCATCAAGGCCTCCAGCGCGCGCT # Right flank : CGACTGGGTTGGCGCGGATTTATCCGCTATCGCCCAGGTAGGGCTTAGCAGCCCAGGCGGCTTTATTAACCCGGCCCTTAAATACCGCTCCCCTTGAGTCTATCGAAAGGCACAACAGCTTGGGCTTCGACGAGCTCCGCCCGAACGGGATACCGGTGATAAATAGGGCCGGATTAATGAGTGTTATCCATCAACCATCTGCCTGCTGTCGGAATTTAATTCCTCATAAAAAGTGGCTAAACCTTACGCTGTTTTGGCTAGCTGCTATTTTTACCTGTATTGGATTTAGAGAATCCAAGCGTGGGTTATTCCTTAGCTAATGGATCATGGGGCGACGGTACGTCGTTCAAGTTCCCTAAATCGCGAAGTCACTATTACCGACCTTCCCGTTATGAATGAAATCCTAAAGTTTCTGACCGACAATAATTTTATGCCGCATGGCTATTGCCTGAGTTGGTCGCCGGGTTTGTTGTGGACCTTCGTGATTAGCGATGGCTTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATTCCCCGGCTACACGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.20,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //