Array 1 161-592 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000011.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 161 29 83.3 37 AC...-..AC.................... TGACATCAACGGTATCGAACAACGGTTGCGCGCAACC TTA [170] 230 30 100.0 36 .............................. ATGGTATTTCCGTTCAGGCTTCGGTCAATGCCCTTC 296 30 100.0 36 .............................. CCGCCCCTTGTGCCGGCCGCCTCCCGCCACAACCGC 362 30 100.0 35 .............................. AAAGAGTTACGTCCTGCGGAGAAGGCGGCGACGGT 427 30 93.3 40 ............T........G........ ATAACGGAGGTGATCCCCATGGTCTCTGGAATCGAGCCCG 497 30 96.7 35 ........................C..... GCTGCCTCGGCCATCTTCGTAAAGCCACGCGCGAC A [510] 563 30 86.7 0 .........A..........A..G..C... | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 94.3 37 GTTTGTAGGGTACCTATGAGGATTGGAAAC # Left flank : GTTATTTTCCACGCCTTGGAGCTTGCGAATCCACTCAAGAACTGCGAAGCTATTGACAGAAGCCATCGTTGCGTTCCTCCTACTAGTTTGTTTCGCCACACTCTAGTAGACACGCACGGTGGCTTCGTCGTCAATTGTGGACGACGCATTTTACACCACTA # Right flank : CCGAAACCGACGCTGGCCTGTCCCGCAGTCCATCCAGCGTTGGTACGACACCGATAAGCATCATCGGCGCCGGCGCCTGTCTCAGATCTCTGGCCGGCGAGGAGCGGCTGCGCCGCCGGGCTTGACTTCTTCGGCGGGGCGCGTGAACCAAAAGTAGAACGTCGCCAAGAGAATGGCGGCTCCATAGATGACGGGCTGCGGAAGTTGCACGGCAGGAAGTTTATGCAGGAACATCGAGATCACCTCACCCTTCGTGCTTCGGAATGGGTGCCAGAAATCTTTTTGGACCGTTTGGCCCGAGTGGTGTTGGACGGACGGGGTACCTGCGCTCCAGACGTCAGGAAGGACCCGATGGTCGGCGAAGGCTGCAGATTGAAGCGGGTGATCGGCGGGGTGTCAGGGCGTCCACCGAGGCGCCACAGTGGGCCGCGCTTGATCTCGCGCTCGATGATGGCGGAACGCAGATCGGAAAAGAACTCTTGGGCACGGCCGCTGGTTTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTACCTATGAGGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 56311-54885 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000021.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 56310 37 97.3 36 ..........G.......................... AGCCAGGGCAGCTTCTGCGCTGGATGGAAAAGAACC 56237 37 97.3 34 ..........G.......................... GCACCAGGCGGAGCGCCATCGGATAGGCTGGCCA 56166 37 97.3 35 ..........G.......................... TTCCAAAAGACCTTGATCATGGTCTTGTTCTGCTG 56094 37 97.3 37 ..........G.......................... ACTCGCCACAAACTTCGCGGACGCGGCACGTACGCAC 56020 37 100.0 37 ..................................... GGTGGTGGAGCAGCCGGATGGCTCATGGCAATGGGTG 55946 37 100.0 36 ..................................... GAAGAACTTCGCCGAGTACAGAGAGCCCACTCAATG 55873 37 100.0 35 ..................................... ACTGGGCAAATCTACGTCACCTCCTCAGCCGTGAC 55801 37 100.0 35 ..................................... TCCCCGTGAGGCAGATCGGTCGGATCCGGGATCGT 55729 37 100.0 46 ..................................... CGGGGGTGTACAAGGCGTGCCACGTGGAATACCACGATCCCAGCAC 55646 37 100.0 35 ..................................... GATCAGCAGCTTCAGGCCATGCAGACGGCCATGCA 55574 37 100.0 36 ..................................... CTGGCCGTACACCGTCTCTGCACAAGCGCCAGGTTG 55501 37 100.0 41 ..................................... TTTTCGTCCGGTTCGAATCTGCCAAGGACCAGGGCCGAGGG 55423 37 100.0 35 ..................................... ACCAGTCGCCAGCCCTCCGCCGTACGCACCCCCAC 55351 37 100.0 36 ..................................... TCAATCGGCGGTTGAATTGACGCCACGTGACGGAGA 55278 37 100.0 36 ..................................... TTGGGGCACGCTTAACGGTTGAGCGTGCGGCTCCAT 55205 37 100.0 35 ..................................... TAGTTTCCGACGAGTTAATAACATACCTATTTGAA 55133 37 100.0 33 ..................................... TTGATCCAGGTGCTTGGAGGTTAGTTAGCACAT 55063 37 100.0 34 ..................................... TCAGCGCCTTGAACCGCTTCGCCTGATGGTTCTT 54992 37 100.0 34 ..................................... GGGTTCAGCGGATCGAGCGCGGGTGAGTGATCAT 54921 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 20 37 99.5 36 GCTTCAATGGAGCCGCGGCTTGACGCCGCGGATCAAC # Left flank : ATCCCCGTCGCCCTCTCCATGGTCGGGTTCCATCCAATTGTCACCATCACGCTGCTCAGTTCAGCCCTGCATCCCCAGGTGCTGCACATGTCCCCCATCTGGCTGTCGGTCGCCCTCCTCGGCGGCGGCGCGATCACGTTTGTCGTCAGTCCCTTCACGGCCACGCTCAACGTCGCCGCCGCGGCCAGCGGCGAACGCCCGTCCGTCATTATGCGCTGGAACCTGCGATTCTGCGCCGTGTACCTGGCCATGGTGATGGCGATCGCCGCGCTGGGGCAGACTGTGGCGGGGTGAGAAGGCAGGGGAGGGCGGACGAGAGAGAAGGAGAAGGAACAGTAGGAGGGAAAGATAGGGAGGAGGGGAGGACGTAGCGGGGCGGAAGGGCCATGGGGATCGGTCGCCGTAGGGTCAGGGAGGAGGGAGGAAGCGAGGTTACAGGGCCGCGGCTGGAGGCCGCGGGTTACGGCGGAGCAGATTGCCGCAGGCTGGAATAGGATTTG # Right flank : CCTTCCCTTTTCAGGCCAGTCCCCAGGCGGAATTTGGGCGCACTTGCGCGAACCTCTCCGGGATCGATACGAACAGCCTTCAAGCCATCCAAATTCTACCCCCAAATATCGAACAAGTCCAGGCGTCACGCGGGTTTCACACATTGCGCGAACTCCCCGGCGTTGCGGCTTCGCTCCGGGTTCGCGCACAGCCGCACTGGTTTTCCAGAGCGAACAGCACCCGACAATCGACCCCAAGGCCATCCACGGTACACCCCCGCCCGCCATAAAGTCACCTAATCGAAGCCCGCACACCCCATTGGGACCTCACTTCCAATCGCCCTCCCAAAGCTTAAGATCCCTTTCCACTTTAAGCTGGCACCGTCCCCATGGGATAACACTCCATCCCACCTGATCGTCTCGCCGGCAAACTGAATCATTACAGTGTTGACGTTAAGCGGTCGGCGGTCCGGATCCCCGCAGCGCGATAACGTAAATCTGTGCATTATTCTCTTCGATCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGAGCCGCGGCTTGACGCCGCGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.30,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 77173-77881 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000005.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 77173 37 100.0 39 ..................................... GGACACGTCCCGCACTGGTCAGACCGGACAATATATAAG 77249 37 100.0 35 ..................................... TTCGCCCGGCTTCAATGTTGGCCAGATACGCACGA 77321 37 100.0 36 ..................................... AAGGAGACGGCGTTCCTCGGATGACATCATTTCGAC 77394 37 100.0 40 ..................................... ATTCCTTCCTCGAGGATGATCGGTTTCCACGCATTTTCCA 77471 37 100.0 41 ..................................... ACGAACGAACGCTCACCGACATACACCAACTGCCCAGTCTT 77549 37 100.0 35 ..................................... CGAGGCGTCCGCATGTGCTCGAACAGATACATGGC 77621 37 100.0 39 ..................................... CGTCGCACAGAAGGCGGCTACGGTGCGCGAAGCTGCCAA 77697 37 100.0 39 ..................................... GGGCCTGGTGTGATGACGCTCTCGTACACGATATCCACT 77773 37 97.3 35 ..........................T.......... AGCCCAAGTGCTCGCTTTGCCTCCGGTACGCCGCC 77845 37 83.8 0 ...A..........T.C...C.......TC....... | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 98.1 38 GTCGATCCGCAGGCGCAGCCTGCGGCCCCATTGAAGC # Left flank : CGTTTGGCAGCGCAGGTGGCCGCATGCGTGTGCAAGCCTGGCGTGCGTTTTGCGGATCTCCAGATTGCCGCTTTGGTCGACACCCGTCTGCGCGGGCACATTCATGTCACCGGTCTTCCGCGCGGTGACGAGAAACACGATCTCATGAAATTCCTGAAGAAGGCGGAGGAAGAGGTGGCCTCCTCTACGCGTTGATGGAACTCGGTTTTCGTCGGGGAACCTGCGGCGCGTATGTTCGTCGCACCGGATGTTCGGTGCGGCGACACCCGCAGTGCTCGGTGCTCCGGTCTCGGGCGGCGAATCCATCTGCTGCGCGAACCCCATGTGATGGTCACATCCCAGGAGGTTCGCGCATCTCATGGAACCCGCGTCCCATCTGGATTTCCGCCGCCTTGCAGATTAAAATGGAAGCACTGGAAAACGTGGATGCTATGGCGGTTCTGCCTGGTTCGCACAAAAATGAAATCAGTTCACGCGGCTGCAGGGCTGAAGGTGGAAGA # Right flank : CGGGACGGAGGCCACGCCGACGGTGCGGACCACGTCGCACTGGTCGATCCGCAGCCTCAGCTCCCGCCTGCTTGCCTGCATCAGTACAGGTGTTCCTGGATGTTGTAAAACGTCACCTTCGCCGGTTTCACGAAGGAGAGCGTCCGCATCCACCGATTTAACTCCGCTTTCAGCTCGTCTCGGGTCATCGACGCAGAGCCCGCCGCCAGCAGGCGCTCCCGGTAGGCCGGATGCGGCGGATCGACGAAGGGAGACAGGTACACCACGTCGCCCTCCGTTAGCGGCAGGGCCGCCAGTGTCTCGGCGGTGTGTTCCAGATGCTGGTCAGCAAACCGGTGGCCGCCTGCGCCCACCAACAGAATCACGCCCACGCGCATGCCGGCTTCTTTGCACCGCTCGATCACGCGGATCGCCTCCGCCGCCTTGCCCGGCTTATCCAAGAAGGCCCGCAGCTCGTCGTCCCCGGATTCCAGCCCGATGTACACCGTCGACAGACCCGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGATCCGCAGGCGCAGCCTGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 22198-24319 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000001.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 22198 36 100.0 36 .................................... GTCTTGGAAAGGCGGTGAGCACATGGAGTATGAGGT 22270 36 100.0 37 .................................... GAGGGTGAGCGGAGCCGTGACCCACGGCTTTCCGTCG 22343 36 100.0 38 .................................... AGCGTGTAGGTCGTATTATTCGCCAGCGTGTAGCCGTC 22417 36 100.0 38 .................................... TCGAACTGCGGCGCCTCGGCCTCCTGATACGCCTTATC 22491 36 100.0 35 .................................... TAGTACAATCCAGCGCCGTTCATAGCCGCCGCCAT 22562 36 100.0 36 .................................... CGGAGATGGACGTGCTCCAACAAAGATTCAGCCGCG 22634 36 100.0 35 .................................... CGTGCGCACCTCTAATTCACATCAAATTCCACCGT 22705 36 100.0 36 .................................... ATCGTACCACGCGCGCGATCAGTCAAGGCATACATG 22777 36 100.0 35 .................................... ATTTGATCGCTTCTTTTCCAACTTCGTAGTACTGC 22848 36 100.0 34 .................................... CCAGCGCAACCGGGTCCTGCGCTTCAATCCGCTC 22918 36 100.0 37 .................................... CACCAGGTCCTTGAGCCGCGTGTAATGGAGAGAATAC 22991 36 100.0 35 .................................... CAGCATGCGTTGCACCTGGCTTAAGCTCGTGTTCA 23062 36 100.0 35 .................................... TGTTTAATTTTGCCTTATCAGCAGCAGACATAAAT 23133 36 97.2 37 .........C.......................... CCGCTCGAAGATGGGCGGGTTTTTGTGTTGTCTCATT 23206 36 100.0 36 .................................... GGCCTCCAATCAAAAAGAGAGGGCCGAGAAGCCCTC 23278 36 100.0 37 .................................... TGCTTTGCGGGTGGAGCTTCCTTGTGAGGCCGATCAG 23351 36 100.0 36 .................................... CAGCTTTTCGCGCACCGTGATCCTTGCTTCCGCTGC 23423 36 100.0 36 .................................... CGGCATCCGGCTCAATCACGTATGCCAAGTTCAGTG 23495 36 100.0 35 .................................... GTGGGAAAAGTTCGCGTCCGTGTACGTGGAGCTTA 23566 36 100.0 36 .................................... TCCAAACTGAGAAAACCGCTATTCGATCTCGCGATT 23638 36 100.0 35 .................................... AAAAGTGGCATCCTGATTGTGGCGGCCACGACCAG 23709 36 100.0 35 .................................... TGTGAATATGGTCGTGTCAGTCCACTGGAATCCGC 23780 36 100.0 37 .................................... TCCTTTTTCTGTGGAGTGTAAGAAGCATGAAGGTTGG 23853 36 97.2 36 ..................A................. TCGTTACACCACTCCGCAACACGATTCGGCGACACC 23925 36 100.0 38 .................................... GCGGGTCGATCGCGTCCGGTGTGGTGCAGGGCTTTGAG 23999 36 100.0 35 .................................... TCTGAAGCACGCCGTGCAACCGTTCGACCTCATCG 24070 36 100.0 37 .................................... CCGAAGTCCATGGACATCAGCAAGCAGTTTGACAAGA 24143 36 100.0 34 .................................... TTGAGGGGCCAGTGACGCTCGATGAGCCCATACC 24213 36 97.2 35 A................................... GGATGTGTACTGCGAGGAGATCGAACGGCAGATGG 24284 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 30 36 99.7 36 GTCGGATCGTTGAGCGGGCGATCTGAGAAGTGGCAC # Left flank : CGGAGGCGATTCATCCATCCACGGACCAGGTTCTGTTCGCCCGGCTAGGGCCGGTGGACTCGAAGCGTTTGGAGAAGCAGATCACTTGCATCGGACGGGAGTTCGTTCCGTTGGACCTCAAGGGGCTTGTGTTTTAGACCGAATGGCTGGCGGCCGGCAGGGCGACGATATGGGGAGGACTTGACAGCGTCGACAGGATTCGATTATGTTGGAATTGCCGATCTATAGGACGGCAGATTCAACGGGATGTGCCAATGCACTCTTTCCAGGAGTGAACACCCCGTTGGCTTCAACATGATCGCCCGCTCAACGGTCCGATTTCGAGCGCCGGTTCAGGTCAAAACGCCTGGGCGGCGCTCGAATCGTAGGCAGGACGCCAAACCGCGGAGGTGCTTTGCGATGTTCGGGGAGACGAGAGTGGACCAAATCCACAGGGCATCTGTCGGCGCTCGCGCGGGAGTGCTGGACATCTTGAAGCATGCGGCCTGCGAGCACCTGCT # Right flank : CCGTGTCTTGTCACGCATCTCGTGCTACTGCAGCTCAAGATGGAACTCGTCCTCAAAAAAGATGACAGCCAATCCCGTTAAAGGCTGGCCGGCCTTGGATTGGCTATCTGCTGCTCATTCGGCCCAAGCGCTGGTGCTGCAGGTCCCGCCTCTCTGCCCGTCAGACCGCCATCTGGCGGGCACTATACATGATGCGCTCGGTTCTTTAGTTACATTATGAACTGCTCGTTCCTGCGTGTAAACCTGATTTTGTCCCCAGTTGTCTGCTTTTGCCCATTCTTGTCCCGCACCGTTTCAAACCGTACCATCCCGTCCTACTCGGTAGTGCACATCCGACACAAGTATCTGGGTCCGGAACCGGTCGTTGGCGTAATGATCTCCTCCACGGGTTTACGGTGGAATCGCAACAGCGCACCCCGCGTAGCTGGCGATGAATTCGTTGAGCAGTGGCACCGGCGGAAACCAGCGGATCGGGCCAAGGATCGGGCCCCCGAGGGGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGATCGTTGAGCGGGCGATCTGAGAAGTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 254529-255532 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000001.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 254529 37 100.0 35 ..................................... ATGATTGGAACGGGCTTTCTCAATTTGCTGGAGCA 254601 37 100.0 39 ..................................... TGAGTCTGGCGTACGCACTGGGGCGGCCGCCGTGGGGCC 254677 37 100.0 40 ..................................... TTCAACGGGGTCGTGGGGTAATCGTGGGGTATGTCGCGAC 254754 37 100.0 38 ..................................... TGCATGTCCTGTGCATTGTAGTAACCGAACAGCATCAG 254829 37 100.0 36 ..................................... ATGCCGCATGCGTACCAGCAGCACGCCATCGAGCAC 254902 37 100.0 37 ..................................... ATGAGTTTCGCAGGCAGTTGGAGTACAAGGTGCAGAT 254976 37 100.0 38 ..................................... TGCATGTCCTGTGCATTGTAGTAACCGAACAGCATCAG 255051 37 100.0 36 ..................................... TGCGAAAAATATGGACCGTCCTGCCCTCAAACAACT 255124 37 100.0 34 ..................................... TGCCCATCCACGCGCCACCTCCCTCGGCTTGAAA 255195 37 100.0 38 ..................................... GCAAGCCAGGGATCAGTCTCTGCTCAACCGCATATCGG 255270 37 100.0 34 ..................................... ATCGTTCCCGTTGGGGCCGTTGAGGCAACGGCCC 255341 37 100.0 41 ..................................... CAGAGGCATTCCGCGAGTTGATCCTCCCTGCGTACCGCAAC 255419 37 100.0 38 ..................................... CGCTTGCGTGCGTGCCTGAGTCGACTCCCTAAACTCAC 255494 37 97.3 0 ...............................C..... | C,C [255528,255530] ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 99.8 37 GTTGATCCGCAGGCGGAGCCTGCGGCCCCATTGAAGC # Left flank : CCGTTCACGGGCCCATCGCCCTCGGTTCCAATTGCCATTTTGGCATGGGGTTGTTCAAACCCGTTCGGTTGAAAGCCGCAGATCGGGATGCGGGAAGCTAAGCGCGCCGGTCCAGTGAGTCATTCGGTGCCGGGTTCCGCGCTGAACCTGGCGAACTCGCCATCGAGATGCACGCCGTGGGCGATTGGGGCTCTGCATTTGTGACGGCGGGATGGAGGCGTATGGCGGGACTTGGGTGCTCCTGGATGGTCCGTTGGATATGTTTGTTCCGGCCAGATTCTCGGCCCTGCTTGGGTGTGCGTGAAAGGGTTTGCGTGAACCCCAAGTGGCGGTGATTTCCCAGGGGATTCGCGGATCTCGTGCGAGTCGACAATTCCGGCCGATCTTGGCTTTTTGGGAGCACAGCCTGTATGATTGGGGCATCCAGCGGCCATGCCAACAACAGGGGTTCGCGCAAAACGCGTGCGAAGCCTTGTGTCAGTAGGACCGAGTGGGGAAGA # Right flank : CCCCGACCACGGTCAGGGTGACCATTCCAAGTCAATCCGCCTCCTCCAGCGGCCTCCGTAGAATCCCGCGCGCGGACTCCGAATGAGGTTTTCGAGACGCAGCGCCACACATCAAGATTTTTCACAGCCGCAAGAATCCCGTCCCGAGCCCTGTCGTTGCGTCGACGCCAACCGGAGCATGGGCCGGATCACGAGCCGGACATCCCAGCCGACGGGCCCACCGGACACTCCAGCCGACATCCCAACCGCTCCCAGAACGGACACTCCACCGGACACTCCAGTCGACCGGCCGGAAAAACCACGCCTCGGCGCTGTCCTCCTAGCCGACGACGATTCCATCCCGTGCACGATACGCGGCCCTTTCCTATCCATCCGGCAAGGGCCGCTCTTCTTCGCTCTTTTTCTCCTTGCGCCCATCCGCCAAACCGGTATAAACCCCGTCCCTCCCGGTGAAGACTCTTACTAAAACAAGCGATAGTCTTAGTCGAATCCAAGGAGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCGCAGGCGGAGCCTGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 676-1376 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000033.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 676 37 100.0 37 ..................................... CCAGTGACCTTCGGAGTTTTGTTGACCGTCACTCTGC 750 37 100.0 35 ..................................... GCGACCATCTCATAGATGTCCCTCGGGTCTTCCAA 822 37 100.0 36 ..................................... TACCAGCCGGAGATGGACAAGCACACGGACACCTAC 895 37 100.0 37 ..................................... TCTGTAAGGACGTAGATGGGCTCACGATCTACGATCC 969 37 97.3 37 ...................A................. GAGCCCGCTTGAGTTGAAGCGGCGTTCCGTCATTCAT 1043 37 100.0 35 ..................................... TCAGCGGGTATGTGCGCCCTCCTTCACCCAGCAGA 1115 37 97.3 41 ..............C...................... ACGTCGCGCTCCTTCGCGCGTAGCGCCGCCAGTTTTCGTAT 1193 37 94.6 35 .................G......A............ GCGTGATGATGGACCGTTGGTTGGCCGGTCATGAG C [1212] 1266 37 81.1 37 ..C.A.........C..G.A....A........C... GACGCCACCCAGCGCTTCAAGGATCGGCTGTCAGACA 1340 36 83.8 0 A.C.............-..G....A........C... | C [1353] ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 95.4 37 GTTGCATCAGAAAATCTACTTGAGGACTTGTTTACAT # Left flank : CCCGGGCCACTATCGAGCAAATCCGAGCGCGTCTGAGGGAGCAGCGGAGCACAGTAAAGTCAGCTCCCAGGTTGTCTCCGGAAGAACTGCTGATCCGCCAGACTCTCGCGGACGTTGCCCTGTTGTATCGGTCTGTACGCACACTTGAAAAAGCACTTACGGCCGCACAACGACAGCTTGGAGACCCGTTTATGTTCGAGTATGAGTTAGCCGAGGAGGCACTACAGGATGCCCATGAGACCGTCAAAATCATCCGGGCACATTGGGCACAAATGCCTCCAAAGCTGCGAACGGGGATAAAATTCGAAGAGCCGGAAATAGACTTGCGCGAACCTTGAGCACTTTGAAAATCAGATGAGGTTCGCGCACAATGGCTATGCTGATAAGTCCGGAATTGTTTTGGAGAAAGAATGTATCATAGTAGCTGATGGACAGTATAAAGAGAGGTTCGCGTAAAAGCCCTGCGAATTCGAGGTCTAATACGTAATCGTAAACGAAGG # Right flank : TGTCCGACAGATCGATGTAGATGAGTGGATCAGGTAGCAGGTTTTATCAGAAAATTTATTTGTTGCCATCAGCGCATCAGATGGGGATTTGTGGGGAAGGCGTTGCATCAGAAAATCTACGCAAGCGACCATCGTGATGGCCTCAGCGCAGTCAACAAATGGTGCAAGTATCTGGGCTCAGGTCCAGTAGTCCCGGATGATGGCGTCCCCCACGGGTGTGCGATGGAATGCCCAGCTGCGCACTCCCGTAACTCGCGATAAACGAGAAAGAACACCCCCTTTAGGGATGGGAAACACGTCAATGTATGCGGGATACCTCTAAACCATCACAAGCTCGCAACATGATAGAATAACCAGTGGGAGAGGGGAAACCTTCTCCGCGTTCACTCCCTGACGAAAGGGGGTGTACGGGTTGAGTGAGTTTCTCGCCCTACTGGGGCTGGCAGCCGTGATCCGCTCGGTTGCGACCCTGGTGTGGGCAATGAGAAAGGACCCCGGCA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCAGAAAATCTACTTGAGGACTTGTTTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 93187-98268 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000013.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 93187 30 100.0 35 .............................. GCGTTCCTCCTGCAGCTGCTCCGCCGTGGTTCGAA 93252 30 100.0 38 .............................. TCATGACAAACGGGCGTCACTTGGACGCCCGTTCCTCA 93320 30 100.0 38 .............................. CGCTTCGGCCGCTCCGGTGCCTTCTGCTGTCCCGCTGG 93388 30 100.0 35 .............................. CGGATGATGTTCGCGAATCGCAACAAACGGCCTGA 93453 30 100.0 39 .............................. CTGCTCTACGACTTGCACCATATCCACTACCCCCTTACA 93522 30 100.0 38 .............................. TAGTGCAGTCGTTCCCCGCGCGTGGGGCGCTCTGCCTT 93590 30 100.0 36 .............................. AGTGCCCCGCATGGGCGCAAGAATGGAGGCAACCAA 93656 30 100.0 35 .............................. ACTGGTGTCTACCACGGCCCAGTTAATGTCAAATC 93721 30 100.0 35 .............................. AGGATATGGCCCAAGAATTTGATGGGTCATGTTTC 93786 30 100.0 36 .............................. CGTTGCCGACCGTGATTTCTAATAGACTCTTAGATT 93852 30 100.0 41 .............................. TAATAGCCGAACAGCATCAGCATCGGGTCGTGGATCATGAT 93923 30 100.0 37 .............................. ACGAGATCGCCCCGACACTGCCGCAGGACCTCATTGT 93990 30 100.0 40 .............................. ACCTCTGATTCGAGCGTCATCGAGTAGGACTTGGGGAAGA 94060 30 100.0 35 .............................. TACCCGCGCTGTGCAGCGGTGCCGCGCTCACGGTC 94125 30 100.0 39 .............................. TCCCGTTTAACTGCCACGACTGCCTGCCGCTTGGCTCTG 94194 30 100.0 42 .............................. CCACGGTGTCTGTGGATAAACAAGCGCTGTAGGGGGTGGCAA 94266 30 100.0 36 .............................. TCCGAGATGAATGCGGCAATCTGCTCTCCCTGCTCC 94332 30 100.0 37 .............................. CAGGATCACGAGGTCGATCAGGTCGTCGGCGTCGTGA 94399 30 100.0 38 .............................. TGAAGTACGTGGCCAACTCAACGGCGCCGGACCAGGCT 94467 30 100.0 35 .............................. AGGTTCGCGATCTCGACCGCGTGCTGCGCCACTGT 94532 30 100.0 40 .............................. GCCAGAAAATGAGCGCCGTCGTATTCGGCGGCATATACTT 94602 30 100.0 36 .............................. AGTCCGTGACCTGGAACGCCTCGAACGTCCGATTCC 94668 30 100.0 37 .............................. TCGCGCTCCTCCATGGAGGTAAGTCGGGGTGCATCCT 94735 30 100.0 36 .............................. TTGATGTCTCGAAGCCCATCGACTGGACTCCTATGA 94801 30 100.0 38 .............................. TGGAACACCCTCACCGCCCCGTCCGACCCAACTGACTC 94869 30 96.7 36 ............................C. CCCGTCAAAGTCCAGTATTGACGCGGATTTTTATGC 94935 30 100.0 37 .............................. GCTTTCTGATGCTGATTATACATGCCTTGCGTGATAA 95002 30 100.0 37 .............................. CGGAACGCCAGCGCGCCGCGGCGATCATCACCGGTCG 95069 30 100.0 37 .............................. AAAGGTATCCCCAAGTTGGGAATACCCTGATGGCCGT 95136 30 100.0 35 .............................. AGCGCGGTTGGTATGGGCACGAAGGGTCGGCCCTA 95201 30 100.0 36 .............................. ATGCGTCCAGTCGATGATCTGCACGCTCCAGCCAGC 95267 30 100.0 37 .............................. TCAAGGTACATGCGCTTTGGATGCCCTGCGCGGCTCC 95334 30 100.0 35 .............................. CATAACATCATATAGGAGCAGTGTAGTCATTCGTC 95399 30 100.0 37 .............................. CGGAACGCCAGCGCGCCGCGGCGATCATCACCGGTCG 95466 30 100.0 35 .............................. TCCAATCCGCGAGTTCCTGGTCGAACACCGCCATC 95531 30 100.0 40 .............................. TCGTCCATCGCGACTCTGATCGGCCTGGGGATCGCCATCA 95601 30 100.0 40 .............................. CGCTTTGTCCACGCGATACCTACCCAACCAGCCACAACAC 95671 30 100.0 36 .............................. GACAGCCTTCCCCTGGCCTCCGGCACGTCCGATTGG 95737 30 100.0 36 .............................. GCCAGTTCGATCTGCGTATGCTCGCACCGGGGATGC 95803 30 100.0 35 .............................. TCCCACCCCAGGAGCGCCGCTGCCTCGGCCACACC 95868 30 100.0 36 .............................. GCCTTCATGACAGCCGCGACGGTCGGATCCTGACTC 95934 30 100.0 37 .............................. AGGGTTCGGGCAGCCTGCCCCCGGTCTTCAGCACCGG 96001 30 100.0 37 .............................. TGTCCACCAGCGCCGTGATCTCCACCCGCAGCAGGGC 96068 30 100.0 41 .............................. TCAACGGTCATCGAAGCGTCAATCTGGGCGTCGAACATCAG 96139 30 100.0 40 .............................. TAGTCGGTAAGGCTCACATTGATGGTCGCGTTGGCCGAAC 96209 30 100.0 36 .............................. CTACGAGGGCGAGTTCATCGGCTACGACCCCGATGA 96275 30 100.0 36 .............................. CAGTTAGGATGATCTCCAGACGGGTGCCCACCCCCA 96341 30 100.0 37 .............................. AGGCCGCGACGGGGGAACCGTACGAACGCTTCAGAAA 96408 30 100.0 39 .............................. ATCTCCAGGATCGTCCTGCGTCCATTCATGAACTGGTCA 96477 30 100.0 40 .............................. GCGTCCTGTACGACGCGGCCGCTGCCATCCAGCGTCGCAA 96547 30 100.0 36 .............................. GAGCTTCTACCGGCGGGCGGCTGGGCGAGGCAAGAT 96613 30 100.0 36 .............................. TAGAGAAGCGCGGATATCCGAGGAGGAGAGGAGAGC 96679 30 100.0 38 .............................. TAAGCGAAACCGAGCGAAAAGGAGAGGTTGAAGGATGA 96747 30 100.0 39 .............................. CAAAACATCGAAAAAGTGACCGAGAACGAGGAAGCGCTA 96816 30 100.0 38 .............................. CGTCTTCTGCCCCGCGATGTCAGCGACCGGGAGCGAAC 96884 30 100.0 39 .............................. TAGAAGATAACGTGTTTCGCCTCATTCAGGGTTAGGCCG 96953 30 100.0 38 .............................. CGCAAGATCCAGCGTCTGCACTCTTCCTCATACTCGCC 97021 30 100.0 39 .............................. TTCGGCAACATGCCGGGCGTGGATGTCCAGGTCAAATCC 97090 30 100.0 35 .............................. TTCAAGGCCAACGGCCAGCTGAAAGACATGGCCGA 97155 30 100.0 36 .............................. ACAGCGATTTGACCGGCGGCAAAAACTAGGACGCCA 97221 30 100.0 36 .............................. CCGGGCGATGCGGTACTGGATGGAGGACCGGACACT 97287 30 100.0 39 .............................. AACCATGAAAGGATGGTAGTTGGTTTCGTTGGCACAACA 97356 30 100.0 38 .............................. CAGACCTCGACCACAGCCTCACCCGTACTCGTCACACG 97424 30 100.0 35 .............................. CTGGTATAGCTCCAGGCTCCACGTCAGCCCGTACC 97489 30 100.0 35 .............................. CGCAAAAGCGGCACTCACGAAGGATGGTTTGCCAT 97554 30 100.0 40 .............................. TCGTAAGTGCGGCTGGCGCAAGCCTTGCGGCTGGCCTGGG 97624 30 100.0 35 .............................. GAGTACCCTTTTCGTTCGTACTCGCGGGCGACCAG 97689 30 100.0 35 .............................. GACGGATAGGATACATATACCATACGGAGGACGGC 97754 30 100.0 36 .............................. AACCACGACTCATGAGTGTCCGTCGCCAGCTTCGAC 97820 30 100.0 36 .............................. CCCCGAAAATCGGCACCGCCAGCGGCATCGTAGCCG 97886 30 96.7 41 ..............A............... GGACCGTCGAGCATGATGATCGGCACTGTGCGACGCCGCAC 97957 30 80.0 34 C.....G............C......CCC. CCATCTCTCGTCGTGTCGCACCCACACTTCCCGC 98021 28 83.3 52 .G.....-...T..-.C............. TGAAGATTGAACATATCGAGACGTTGCAAAACTATGAACTTGGCAATATCCT 98101 30 96.7 35 .........................A.... ACCTGGACGGGGTGCGCCGCAACCTGGGCCCATAC 98166 30 93.3 44 ........A........A............ ATCCGGATTCTCCCATTTTGTCTTTCGCTCCCACTTCCTGGGGC 98240 29 73.3 0 ..........-GGTGC......G....G.. | ========== ====== ====== ====== ============================== ==================================================== ================== 76 30 98.9 37 GTTTGTAGGGTACCTATGAGGATTGGAAAC # Left flank : TTGTATTGCCGATGGAGTTGCGTAAGACCCTTGGGATTCGTCCGAAGGACGGTATGGAGATTTTCACGGACGGGGACAGAATCATTTTACGTAAGTATGAGCGGGGCTGCATCTTTTGCGCCGAAGCGGAGGATGTCCAGGAGTTCCGCGGGAAGATGATTTGTCCGGCGTGTCGGGAGGAGCTTGCAGCCAAGGCTCACGTGGGCGTGAGATAAGAGGAGGGCCTGCCGGGGAGGCGGGCTTTTTGTTTTTTGTCTTGGATGGTATGAAGTGGCGATCCTCCACCTGCCTTAAGGACGGCAGGCTTGTCGTGGATGTCGTCGATCGACTTGAGTGCAAAAAGTCCGGGGGATCGACGACAATGGCAGGTGAAGGTAGTGGTCATGCGGCTGCGAACAAGTGCGTATTTGACCGACAAGTGGCCATAAGCGTGTTGACACCTTCCCGTTTTTGGGATATTCGATAAATGGATGTCGTCAGGTGGGGCGCGGCGAAAATGG # Right flank : CGCGAATGTGGAGGGCCGAATCTCGGTGTAGCTGGTATGGGTTTGTGGAGGGCGTGTTGAGATACGTCATGGCGGCCTCGGTGTTCTTTGACATGCTTTGGAGGGAGAGGCAGTCTAGTTCTGGTGCATATGCAGAACGTTGCACTTACGCTGCGGTGGCCCGCTGCAAAAATTTTATTCAAAGTGCGAATGTGCACAGGATAGACAAGCCCCTACAATTTTAGTATGATGACTACATAAATGGTGTTCCAATCCACGTGTTCTTTAGGGCATGGCTTCGCCGATGTGGTTTGGTTCCTTGATGAAATACGTGGTGAGATGGACGGTGGGTGAACGGATGTGCGATTGACGCTGACTTTACGAGCCCTTGGTGGCCGCGAGGAGATCACCGTCCCACTCACGTACAATGAGTTTGTACAGGCAGCCATCTACAACATGCTTCCGCCTGATTTCTCGTCTTTCCTTCACAATACAGGATACATATTCGCGAAGCGAGTTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTACCTATGAGGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 108036-110153 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPBV01000013.1 Alicyclobacillus macrosporangiidus strain DSM 17980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 108036 30 100.0 37 .............................. TCGCTCCTGGTCAAGCTGCCGCGCGACAGAAGCAAGT 108103 30 100.0 35 .............................. CGCGCAGAGCAAGGACAAGCTGGTGCTCGACGATG 108168 30 100.0 38 .............................. TGGGTTCCCGCGTCCGTGCGATGGACGCAACCGTCACC 108236 30 100.0 35 .............................. TAAGGAGTCCGAAACATTCGTCGTCGAGGACATTC 108301 30 100.0 40 .............................. CACATATTCACCACTCTGCATACTTTCCCAAACCATCCCA 108371 30 100.0 35 .............................. TACGATGAGATCCGCGAAGTAGCAACCGACCCAGA 108436 30 100.0 39 .............................. AGTGCCCAAGATGGGCGCAAGAATGGAGGCAACCAACAC 108505 30 100.0 37 .............................. CAACGTCTGTCCACCCCCTTGCGTCATCATGGCCTGA 108572 30 100.0 41 .............................. TCCCGGCGGGGAGGTAAGACGGATGCCAACAGCGGTGCTGG 108643 30 100.0 35 .............................. TCGTACACTTAGTGTATGATAAAGTCAACAAGGAC 108708 30 100.0 36 .............................. TACGAGGTGGACGGTCAGCGGTACATGGCCATCCCG 108774 30 100.0 38 .............................. TCCACCTGACGATGTCGCCTGGCATGATCACTGTCCCA 108842 30 100.0 37 .............................. AATCCCACCAATCCCCAAGTGGTGGAGGTAGATGGAC 108909 30 100.0 36 .............................. CGCAGTCCCAGGTCCAGTTGCATCCGCATCGCCCCC 108975 30 100.0 38 .............................. AGGCTCTCCTGCGCAGCAAGGACATCCTGTGCCTGCGG 109043 30 100.0 36 .............................. ACCTGCTGGACGCGCAGAATCGATTCAAACAATCGC 109109 30 100.0 37 .............................. TGGAGCAGAACATGCTGCACGTCGACGGCGATGTGTA 109176 30 100.0 36 .............................. CCGTCACGAACCCGCCGCCGAGCGGAGATCAACCAA 109242 30 100.0 39 .............................. AGTTCGTTCGTCGGGTCTGTGGCGGGGGAGTATGGTCTT 109311 30 100.0 38 .............................. TTCGGTTCGCGTCCTTGGAGACTGGCGAAATGGAATAC 109379 30 100.0 35 .............................. CCCCCCTTCCACAGCGACCGAATATTCGGTCTCCC 109444 30 100.0 37 .............................. ACAAATGAGATCTTAACGTTGGCGGTCCTTGACATCC 109511 30 100.0 39 .............................. TGGGGGCACCACATTCCAGGCATTCTCTGGGAGAGGCGA 109580 30 100.0 37 .............................. GAAGTCCGGTCCGGGCAAATGGATCGCGAAGGAGCCC 109647 30 100.0 38 .............................. ATGGCAGCGGTCATCTCCGGCATGTTCACCGTCTTCAT 109715 30 100.0 36 .............................. CCTTTGAGCCAGAGGATGAGTTTTCGCGGTTTATGC 109781 30 100.0 37 .............................. ATGCCAGAAACTCCCAATCCAATTCCGATGACATTCA 109848 30 100.0 39 .............................. GGGAACTGGATCGATGGAGAGGGGCCAAGGTGGGTGTTT 109917 30 100.0 40 .............................. GCGAAGCCAAGGAGGCCATGAGAGGAGGTCGGCCGGCATG 109987 30 100.0 37 .............................. TTTCTGGCAAGCGACACCACGGTACGGCAAAATCTCG 110054 30 100.0 40 .............................. ATACCGCTTGCCGTTCTGGAGCGTGTTGGCGGCCAGGGTG 110124 30 80.0 0 .....................GG.A.TGT. | ========== ====== ====== ====== ============================== ========================================= ================== 32 30 99.4 37 GTTTGTAGGGTACCTATGAGGATTGGAAAC # Left flank : GACATCGGGGAACGGCGCGTGGCGAGGGTGATGAAGAAATGCCGCGAGTATCTCACCTGGGTTCAGAACTCCGTGTTCGAAGGCGAAATTACCCGCGCCAATCTCTATCGGTTGCGCCGTGAACTGGATCAGATGATTCATCACGACGAAGACTCCGTGATCATCTACATTTTGCGGACCACCCTGTACTCGAAACGAGTGATTCTTGGCCGCGAGAAGGGCGGATTTGACGAGATTTTGTGAAGGGCTTTGTGTTACAGGAATGGATTTGGTGTGCCATGCGGGGCGAAACGCGTGGAACACGGTTCGGCATTGTCGTCGATCCGCTTGAGTGCAAAAAGTCCGGGGGATCGACGACAATTTTCATACGGACACGACAGGGTTTGGAACGCAAGATCAGGCTTGTTTGAGCTTTTTTGCGCCGTTTAACGATTGACAGGTGTGCATTTTGGGTATATCGAAAAATCAGGGGTATTGTTGAATTTGCGCCTCAAAAATGG # Right flank : CCCGTCAAGTGGTGTAATTTCACCGTTTGTGTCTAATGTGTGACATCCATGGCTTTGTTCCGTCGCGGGAGTATATCGACCTTCGTCGCTCCGTCAAGGGGTGCTGCGCTCGTCCGGTCGGACGCCCTTGACGTCGCTCCTGCCGGTCGAATTTAGGCGCCTAGGGGACAAAGTCAATGTTTGCGTGTAACATACACGCCACCTCCTCTCAGCTATTTCTGTAGTACGGCGTTCGGTGCCAGCAACGTTCGGTCTGGCTTTAGTTTCGCCATGGACTCCAGACTGAAGTAGCGTCGAGACACCATCCACTCCTCATGTTGCTCCTGCAGAATGGCCCCCATTAGGCGCAACACGGACTCCCGATTAGGGAATATTCCGACCACGTCCATCCGCCGCCTCATCTCTCGGTTCAGGCGTTCCAGCGGGTTGGTTGAGCAGATCTGTCGCCAGTGCTCGCCTGGCAGCGCCATGAACGCCAACACGTCGTCCTCGGCGGCCTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGGGTACCTATGAGGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //