Array 1 163614-161950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWR01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N37938 N37938_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163613 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163552 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163491 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163430 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163363 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163302 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163241 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163180 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163119 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163058 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162997 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162936 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162875 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162814 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162753 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162692 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162631 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162570 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162509 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162406 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162345 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162284 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162223 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162162 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162101 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162040 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161979 29 96.6 0 A............................ | A [161952] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180997-179871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWR01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N37938 N37938_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180996 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180935 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180874 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180813 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180752 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180691 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180630 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180569 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180508 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180447 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180386 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180325 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180264 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180203 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180142 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180081 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180020 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179959 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179898 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //