Array 1 964442-965080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053048.1 Salmonella enterica subsp. enterica serovar Derby strain CVM 30155 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 964442 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 964503 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 964564 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 964625 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 964687 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 964748 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 964809 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 964870 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 964931 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 964992 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 965053 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 981832-984728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053048.1 Salmonella enterica subsp. enterica serovar Derby strain CVM 30155 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 981832 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 981893 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 981954 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 982015 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 982076 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 982137 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 982198 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 982259 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 982320 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 982381 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 982442 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 982503 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 982564 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 982625 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 982686 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 982747 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 982808 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 982869 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 982930 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 982991 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 983052 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 983113 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 983174 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 983235 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 983296 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 983357 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 983418 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 983479 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 983540 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 983601 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 983662 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 983723 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 983784 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 983845 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 983906 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 983967 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 984028 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 984089 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 984150 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 984211 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 984272 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 984333 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 984394 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 984455 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 984516 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 984577 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 984638 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 984699 29 96.6 0 ............T................ | A [984726] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //