Array 1 62984-68506 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIO01000059.1 Vibrio cholerae strain N2822 NODE_244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 62984 28 100.0 33 ............................ CCCTGAGCAGTTGATTGAGTTCGAGCAGGCAAT 63045 28 100.0 34 ............................ CGTTTACACGGGCTTGATAAGAACCAATCCCACG 63107 28 100.0 33 ............................ AGTAACAATGTCTTTAAAAACACTGCCTCTTAA 63168 28 100.0 33 ............................ TGCACATGGCGCGGTTTGTCGCTGGACATTAAA 63229 28 100.0 33 ............................ CGACGTCATCTTAGCCGTGTTGTCAAAGTGGTG 63290 28 100.0 33 ............................ CCCACCAACCGAGGTCAACGTTTTGTTGGTGGA 63351 28 100.0 33 ............................ CGATAGATGGTCGAAAACCACTGTTCTGACACT 63412 28 100.0 33 ............................ TCTTCAAGGCCATGAGTGTCAAAGGTGGCGTTA 63473 28 100.0 33 ............................ CCAGGTGTCAGGTAAATTCCGCATCAACAAGAG 63534 28 100.0 33 ............................ CTATATGGTAGCTTTCAAGTTGGCACTGGACGC 63595 28 100.0 33 ............................ TATCAAGCCACGTTCGAGGCCTTCATGATGAAA 63656 28 100.0 33 ............................ CAGCAAAGTCAATGTGACCAAGGCAAAGAGAAT 63717 28 100.0 33 ............................ TATCTTTAAATTGTTTCTTCTTCACGCCACTTT 63778 28 100.0 33 ............................ TGCGAGACATACTGTTCATGTCCAGCTTTCTTG 63839 28 100.0 33 ............................ CGATTTTTATCCCAAGTTCTTGCGCTTTTTTCA 63900 28 100.0 33 ............................ CATAAGCTGATCTAGACCTACGCATTTCATGAT 63961 28 100.0 33 ............................ TACTTCTCACTGTGCCATGTCTTTTCTTTGGGT 64022 28 100.0 33 ............................ TCAAAGGGATTGAGTCTCCGCAAGCTAGTTGGT 64083 28 100.0 33 ............................ TCGGGAGACGCTCACCATCTGTGTTGTAATAAA 64144 28 100.0 33 ............................ CGAACTATCAAGCGGGTGTGTCCGGTTGGAGAT 64205 28 100.0 33 ............................ CACGGCCAAGATCCTATTTGAGCAAACCGTGAG 64266 28 100.0 33 ............................ CCTCGATACACCCCAGCCAGACGGAAGAAAAGG 64327 28 100.0 33 ............................ CCACCGAAAAGCAAGCTTGGGAAGTTTTCCGCC 64388 28 100.0 33 ............................ CAGATCACCACGTTTACGGCGATATAAGACTGC 64449 28 100.0 33 ............................ CACTGCTGACCGAATTGGTAAAAATGAGCCAAG 64510 28 100.0 33 ............................ TTTTTGACGCGAAATCCTTCCTATCTAAAGAGT 64571 28 100.0 33 ............................ CGCAGGGAGCAGAAAGGACAGCCGAAAGCGACT 64632 28 100.0 33 ............................ TCTCGGCCTTGCTGTCCAGTCCGGTGGTCTCGG 64693 28 100.0 33 ............................ TATTACTCAGGTGTTTCATCATCAGCCCCTTTC 64754 28 100.0 33 ............................ CGTGATCCTTTGGGCAGAGGAACGCATTTCAGC 64815 28 100.0 33 ............................ CAAAGAGAGCGGTTTACTACTACAAGAAAAAGC 64876 28 100.0 33 ............................ TTGAGCAGCACATCGAGACGATAAGAAGCTTGC 64937 28 100.0 33 ............................ CGCCAAGCTGCAAACCTCTTCCTCAATCTCTCG 64998 28 100.0 33 ............................ TTAGCTCCACTGGTGAGCGTTGCGATCATTTCT 65059 28 100.0 33 ............................ CCGATTTGCCAGCCCACAAATCAGACTCACGTC 65120 28 100.0 33 ............................ TGCACTGCTGCTGATATGGTCGCGTTGTGAGTT 65181 28 100.0 33 ............................ TAACGGCACGCTTGATAAACAATGGCTGGCTGG 65242 28 100.0 34 ............................ CTCCTCCAGCGTCATGCAGTGGTCTACTGGGTGG 65304 28 100.0 33 ............................ TGGAAGTTAGCGCTAGACAATAATTTAATCCAC 65365 28 100.0 33 ............................ TACGAAACCCCACAGCAGCGACAAAAGCGTGAG 65426 28 100.0 33 ............................ CCCGAAATCGCTACTAGACCCGACTTATCAGCG 65487 28 100.0 33 ............................ CAGAAGCTTTTCCAGCGTATCTTTTGGCAGTGA 65548 28 100.0 33 ............................ TGTATCGTTTACTGCTTGGTTGCTGGCATACCG 65609 28 100.0 33 ............................ TACGCACCTTGTTGCAGGTTCGAGTCCTGCACG 65670 28 100.0 33 ............................ CCATTCTTTATGCCTAGCTTGGCATTCCATACT 65731 28 100.0 33 ............................ CACCATTGATTACTCTTTTATGAGTTAACCAAT 65792 28 100.0 33 ............................ GAAATACATTGGGTGATTTTGTTTATGTTTTCT 65853 28 100.0 33 ............................ TAGTTGTTGATGTAAGCAGTGACCGCCATGCCG 65914 28 100.0 33 ............................ TTGCTCACCCTTGCGATTTGTGACTTGTTCACC 65975 28 100.0 33 ............................ CAAAATCCCCCTTGCCAATGCAGCAGGAAAAAT 66036 28 100.0 33 ............................ TAAAGACGTTTGCTCTATTGAACAGTTGTATTC 66097 28 100.0 33 ............................ TCACGTTTGGGACTCCATTCTAAGCGAGGAGGT 66158 28 100.0 33 ............................ CAAGCTCATGGATGATAGCGGCCTTGGTTGCTG 66219 28 100.0 33 ............................ CTTTAAAGAAAGCGGTTTGTGATTTTTTTGACT 66280 28 100.0 33 ............................ TATTGATGAGGCTCACATGGTTGAGTTTTCCGA 66341 28 100.0 34 ............................ TGCGAATGGATTCACAACTCAGCCGCCTAGTTTT 66403 28 100.0 33 ............................ TACGGTTATAGTTAGTTTGTACTAATCCTATGT 66464 28 100.0 33 ............................ TACTAAGTTTACTAAGGGTGAGTGGGTCGCGGA 66525 28 100.0 33 ............................ CGCCGTGATAAGTTCCTGAAGGCCATGAGTGAT 66586 28 100.0 33 ............................ CGACCGATTCGGTATATCTCTATTGCTGTTTAC 66647 28 100.0 33 ............................ CAAGTCAAGCTGCGCATAGCTGAACTAGAAGCC 66708 28 100.0 33 ............................ CAACCGTCGTCAGTCTTGGCCGCTCACGTTCAC 66769 28 100.0 33 ............................ CCATTTCTTTCTTATTCACCATGTGTCCCTTTT 66830 28 100.0 33 ............................ TTGAAAGTTCTCAAAGAGATTGGCCGCGCATTT 66891 28 100.0 33 ............................ TGCAGCGCTGTTTTGTTTTGCTGGTGGCCTGTT 66952 28 100.0 33 ............................ TTGCGGTGTTGTCATAAATAAAAGCGTCACTGC 67013 28 100.0 33 ............................ CCACCAGTAAACTCCACCACGTTAATGAAAACA 67074 28 100.0 33 ............................ TCAATGGCGGCAAGGAGGGGCTATCTGACTCAC 67135 28 100.0 33 ............................ TGATGATATCGATCACCTGTTGCTCAGTAAGTC 67196 28 100.0 33 ............................ CGCACAAGTAGAGACGTAAGTATTCGCACTGGT 67257 28 100.0 33 ............................ TTTCATATAGTCTGAGTAAGACAAACCAAGCTC 67318 28 100.0 33 ............................ TCAAGACAATATGGTGCTGAGAATCGATAACTG 67379 28 100.0 33 ............................ CGGAAGGCCGTTAATTCACAACATCGCATCCGA 67440 28 100.0 33 ............................ TTCTCGTACCATCCTCCACAAACACTTCACCGG 67501 28 100.0 33 ............................ CAAAGGCCAAACGGGATCATGACTTCATCAATG 67562 28 100.0 33 ............................ CTTATGATGAGTTCATGGCTCGCATCAAAGCCC 67623 28 100.0 33 ............................ CGCACAACAGGCCTGCAACCCTTGATTCAAATG 67684 28 100.0 33 ............................ CGAGCTTGAATATGCCCTTTCTGTCGCGTTTTT 67745 28 100.0 33 ............................ TAATAACGCCGTTAAGCATGGGCTTTATGCGCG 67806 28 100.0 33 ............................ TAAAGTATTGCCGAATGTCAGTAGCCCCATAAC 67867 28 100.0 34 ............................ CTTCTCCCAGCCTTCGAAGCGGCACCAAATGTCG 67929 28 100.0 33 ............................ CGTGCTCCTGCCTGACACTATCGTCGACCTGGT 67990 28 100.0 33 ............................ CCCAATCATAGTCGCGTGCGATTTTAGGCAGGT 68051 28 100.0 33 ............................ CACCCCAGACTTCACTTTTAGTGTGAAGCCATT 68112 28 100.0 33 ............................ CTCTAGACGCAATTGACTGCACCTTTTCAGCTC 68173 28 100.0 34 ............................ CTACGCCTAAGCCAGATTACACACCCGATTATTG 68235 28 100.0 33 ............................ TTCTCGTGATTGATGCGACGGCGCAGGCCATTA 68296 28 100.0 33 ............................ TCAATTTCATTGCCGCCAATGGTTGCCACGTTT 68357 28 100.0 33 ............................ CTTATACTAGACAGTACCAAATCACTAAAAGCA 68418 28 100.0 33 ............................ CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 68479 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 91 28 99.7 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //