Array 1 189885-189253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHKR010000002.1 Lactiplantibacillus pentosus strain 06B0048 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 189884 29 100.0 32 ............................. TTATGGACACTGTGCTATCGCTGCCACAACAT 189823 29 100.0 32 ............................. CATTACGTCGCGGATACGCTTGACCAGGCTGA 189762 29 96.6 32 ............................T CCTATTTGGCCAAACATTATAAGCTGGTTGTC 189701 29 100.0 32 ............................. GATGTGCCCATCTACTACTTGATAAGTTCTCG 189640 29 100.0 32 ............................. GTTCATTTTGCTCGATATTTTTCGTTGGTTTT 189579 28 86.2 35 .....A.........A..A......-... TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 189516 29 82.8 33 ..G........A...A....A.......T TAACACGCCGGTAGTCCCGTTTTTGAGGGATTG 189454 29 86.2 32 ..G............AT....C....... ATGACTGCGCACTATACTGAGTCAGTGCGACT 189393 29 75.9 32 ..T.....T......A...AA.....T.G AGGGGCACTCTCGTGAGAAGCGTAGACGCTAG 189332 29 79.3 22 ..G...TT...........A...C....T CGCTGAATCGATATCCGCCATT Deletion [189282] 189281 28 75.9 0 T..........A...A......C-...TT | G [189255] ========== ====== ====== ====== ============================= =================================== ================== 11 29 89.4 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAATATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTGTTAAAATTCCGGATACAGGTCAAACATTCACGCCTATTAAACGTGGTTGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTTATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : GTACCGATTCATGACATAATCAGCATTACTATCGCCTCTAATATATACTGGGATATTTCAGCATTTATACAGAGCGATGAACAACATCACTTCATCAACAGAGCAATTTGACTTCTATGAGAACCAACGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTGTGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGTCTTTCTAACTTATTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATAGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGTATTT # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4843-3842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHKR010000014.1 Lactiplantibacillus pentosus strain 06B0048 Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4842 28 100.0 33 ............................ CCATGGCTAGGCCCCCTCATAGAATTTCGTGTT 4781 28 100.0 33 ............................ TAAGATGATCGAGTATTACCAAACCAGTCACAT 4720 28 100.0 33 ............................ TTAATCCCGCCGCGTCTTCGACCTTCATGTCGG 4659 28 100.0 33 ............................ CGTTTGCCAGGCTTTACTGGAGTCGTTCAATTC 4598 28 100.0 33 ............................ TACGCCGAAAGACGCGAACAACCACGCGATAGA 4537 28 100.0 33 ............................ CAATTCCAGGGCGTAACTATGCTGAATCCTCGA 4476 28 100.0 33 ............................ TCGTACCGAAGTTTGCCATCGATGGTCGACAAG 4415 28 100.0 33 ............................ TCGGTAGGGCCCGCCGCTTGTCGTCTTGTTTAA 4354 28 100.0 33 ............................ TCAAGTCTCACAATGTGATAAATTCCCGCGACG 4293 28 100.0 33 ............................ CTAATTCACGATTCTGGTCGCTGTGGTCAAGTA 4232 28 96.4 33 ..........C................. TAGATAGCTTGCATGAGTGTGCCGTAGTCCGTG 4171 28 96.4 33 ..........C................. TGTTCCGTCCTTGTCGTTGCCGTGCGTGCCATC 4110 28 96.4 33 ..........C................. TTATACCATACACCGAAAATGTGAAATAATAAT 4049 28 92.9 33 ..........C............A.... TAATCCAGCTCCAATTGGTTGGACGTTAAATGC 3988 27 92.9 33 .....T...............-...... CGTGCCGGACTGCTCAACGGTCATAATGCTACG 3928 28 92.9 32 ...........A...........A.... AATTAAACTATTTTTTGATGATACTTGCAGTG 3868 27 75.0 0 A...-....A.....A.A...T...C.. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.6 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATCACTAGTAGTAGTGAACCGCGCCGCATAAACAGATTTAACGGTAATTTTATAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCTTTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATCGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TCTACCTGCCTATCGTACTCACAAAAGTAAAACGTAGCGTTTTTGGAATCAAATCGACCAGAAGTTGACAATGAATTGGTTGTCCACGAAAAAATTAGAGTTCTTTCAAACTCATTGTTACCCTGAAACAACAGGTCATTAAAAATAATAACCACTGCTGGAGATTAGCCTATAAAATGGTTATTGCTTTGGATTATGTAATCAAGTGTTATGAATTTGAATCCGAGCTACATTTGCCAGGGAACTTTATAAAAGATAAAAATGCAATCAGGTATTTCAGAGCGCAGATTTCAAATTAGAATACCTATAAGGAATACCAAATTCATATCGGTAGTACACTATTCTTCACTAAGCTTCCTGGGAAAGCCTTGGTCATGTAGTTTACGACCATATTCGGGTGCCACTAAAAGCTAATAATTTTGGAGGAGAGTACTGAAAAATGAAAAAAGTTACAGTTTTTCTCGTCATAATCTTTGCGATTGCAATATCCATACAATACT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //