Array 1 81644-82040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWU010000001.1 Dickeya parazeae strain S31 Dickeya_zeae_S31_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 81644 29 100.0 32 ............................. CAAACATGACCGCCTCTGCGTTTGACGGCGGC 81705 29 100.0 32 ............................. TCTTGTTAACAGCTTGGGGTTACTTGACAGCA 81766 29 100.0 32 ............................. TATTGATTTTGCACTCATGCTTTTCTCCTTTG 81827 29 100.0 32 ............................. AACATGGTCGATCTCGGTGACAAAGCCGGGGC 81888 29 96.6 32 A............................ AGAACTCAATATATAAATCAAAATCAGATGAA 81949 29 100.0 34 ............................. GATATCGAGTTCGCCTGTGGTGACGGGCGTATGT 82012 29 89.7 0 ..A........................GT | ========== ====== ====== ====== ============================= ================================== ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCTGTCGAGCGATCACCCGCCACACAATGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTGGTAATGCCGGTATAAAGCCACCCGCTGCCGGTGCGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACAAGCATCATCGGTGGATATGGGTGAGTAAAATCACCACCTTTATTTATCAATAGGTTAGCGCTCTTTAATAACGTGAAAAAGTGGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGATACTCTGGGCTTTATTGTGATAATATTCACATTAATCGTGAATTATGTGCGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATGGGTTGTCATCTCCGGGTGAAATAGTGGTATTCGCCGGAGAGATGACCGTGTGGTCAATAAGCGGGAGCCTTGTATGACTGATTTAACTGTAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGCCATCAGGCCAATAGCCCGGCGGGGAAAACCGCCGCTATCTGTATCTATCCGCGTTTCATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGATGATATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGATGTCGACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 204294-203899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWU010000007.1 Dickeya parazeae strain S31 Dickeya_zeae_S31_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204293 29 100.0 32 ............................. CAAACGCGCGTTACGCTTTACGGTTTTTTGTG 204232 29 100.0 32 ............................. GCTGTGAAATTGCCGTATTCTGACAAGGAGGC 204171 29 100.0 32 ............................. TTGAAGTCATCATTAACCCTTTAACGATTATT 204110 29 100.0 32 ............................. CTGGCCAAGAAGCACAGCGCTTAACACCTGGG 204049 29 96.6 32 .....................G....... AGGATTGTAATAGTGACAAAGCGCCTGCAACG 203988 29 100.0 32 ............................. TAAACGCTGATGCATCTAAAGTTGCGGCAGAT 203927 29 89.7 0 ................T.........T.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGTGAGATTGATCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACGCCGTTTGGCGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTAGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGTGATACCTCGCGCCGGGTACGGGAAATGATCTGGCAACAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACTAACACCGAGTCTGGCTTTGAGTTCCAGACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTGAGTTAGTGTTCTTTAACAACCGGAAAAAATCGGTAGAATTTTACGGCCTTTAAAATACCTTATAAAACAGGTATATAATTTTAGA # Right flank : GAAACAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTAGCGGCGGCGGGTTTTTTGAGCGCTAGCGTCTTCGCTGCCGGTGCCGATGAAGGCGAAATCATCGGTCGGTTACCCGCCAGGTTGTAAGACCCACCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCGGCCTGCTGTTGCAGGGATTGCGTGGCATTGTAACCCTCTCTGACCAGCGAGGCATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGTTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGTCGGTTCCCGGCATCCACCGTTTCGACTGAATGGCCGATCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159646-159915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWU010000002.1 Dickeya parazeae strain S31 Dickeya_zeae_S31_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 159646 28 100.0 32 ............................ AGACGCACTGGATGCGGATTTAGAAGTGATAT 159706 28 100.0 32 ............................ GGTAACTGACGACAAATCTGGTCAGCCGGTAA 159766 28 92.9 32 ...........TG............... GGTATTGCTGAAGTTTAGTTTCTTTTTCCTGC 159826 28 100.0 32 ............................ ATCAGGTGGTATGTTCCTGATGGTATGATTAC 159886 28 85.7 0 .......................G.TGG | GG [159907] ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAACTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCACGCAGCGAGGTATACGGCTTATAGTCCCCGGTAGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATATCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACCGTTTATCCCGCACGAAACCACCCACCACTCCCACATACATTCGACAAACACATTCGCCAGCAGCACCCCAGCTGTTTACCAACAGCCCAAAAACGCTATTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAACAGCCAGAACGGAATCAGCCATACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAAAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 165414-164963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWU010000002.1 Dickeya parazeae strain S31 Dickeya_zeae_S31_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165413 28 89.3 32 ...........AGT.............. GATAGCAGCTGCTACAGCGTGTTGAAATTGAC 165353 28 100.0 32 ............................ ACCACGCGAGATATCAAACAGGACACCGGAAA 165293 28 100.0 32 ............................ TCATCTTCGGGGATCACCTGCTCGGCAATAAT 165233 28 100.0 32 ............................ TGATTCATTGCGATATCAACCGTAGGAACATC 165173 28 96.4 33 .............T.............. GATTGCTCGTTTGTCTCCAGGTGGATACATGAC 165112 28 96.4 33 .............T.............. CACCAGTTTTTCGGTCAGGGCCGCACTCATTTA 165051 28 89.3 32 ...........AGT.............. CTCCGCGCAAGGCATGAGCGAAACACGGGGAA 164991 27 89.3 0 .......................-..CG | GG [164968] ========== ====== ====== ====== ============================ ================================= ================== 8 28 95.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGAGGCACTGCCGGTACCAACGGGTGCGCAGTACCGCACCGTACGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGTGCGGTGAACAAGGGCTGGCTGACCGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGCTACAGGATAAACCGGTCGCCGGCACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTTCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTTCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCCTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGGCGCGATTGTCTATCCCGCACGAAACCCCTCACCTGCCTGATATATATCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGATGAGATATACACCGAACTCT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 174017-174645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWU010000002.1 Dickeya parazeae strain S31 Dickeya_zeae_S31_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174017 28 100.0 32 ............................ GCTCACTCTCCAGCTGCTGAATTAGTCGCTGA 174077 28 100.0 32 ............................ TTTGAATGCAGCCTTGTAACCAGCTGCTGAAC 174137 28 100.0 32 ............................ ACCGCCGATTTTTCGGGGCGGACGAAAGGCCA 174197 28 100.0 33 ............................ CACTCGCCAGCTTGGCAGGAACGTCCGATTGGC 174258 28 100.0 32 ............................ AACAGGTACTGACAGACCTGCCTTTCTTGATG 174318 28 100.0 32 ............................ TGCAGCAAATAGCGAGCATCGCCTTCCAGATC 174378 28 100.0 32 ............................ TTGGCAGCATCCAGCCCAATACTGGATGGTTA 174438 28 100.0 32 ............................ GATCTGCTGGCAGCGGTAGCCGCTGCGTTGAA 174498 28 100.0 32 ............................ GCATTACAGCGATGACGGGCTATGAAAAACAG 174558 28 100.0 32 ............................ CCCCTATTGCTGGCTTGAGATAAACGGCGGTA 174618 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTTCCTTCTTCGGTGACATATTCCACCCGCCCACCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAACCCCACCCGCGTAATAACACGCAGGCTAATAGTTCGCCAGAAACATGTAATACACTGGAAAGTAACGAGAATTAACCTAGCACAGCCCCAACGGGAAAGTGAATGACGCCGAAAAGACTTTCCTTATTTTCATACCTTTTTTTTCCGCTGTCTTTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACATCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGTACAAGCGGTGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTTCACCACACTCCCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTCGGGGATATCCTGTCAGAACGACGTCCAATCACTATGGCTACCCGCTGCCGCCGCGGCCCGTTTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //