Array 1 35588-37331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000008.1 Amazonocrinis nigriterrae CENA67 scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 35588 37 100.0 38 ..................................... TCGTACAAATTACTTTACCTGACCGCATACGTCCACTT 35663 37 100.0 39 ..................................... GAACTGGACTGACTCCAGGTACTATTTATTTTCTAGGTA 35739 37 100.0 36 ..................................... TGCCTTATGTCTATCTTATTCATTTTGAGGTTCCAC 35812 37 100.0 35 ..................................... ATACGAATTTCGTCTAGTTGCCCTGAAAAATAATT 35884 37 100.0 37 ..................................... GGGGACTTTAGCGGCGTTGGTTATGAAATGGCAAGCT 35958 37 100.0 35 ..................................... TTCATAGCTACGTACAGAAGCACCAAGTAAAAATG 36030 37 100.0 35 ..................................... GCTTGCTTTGTTGAAATTGCTTCTGATTCGTTATT 36102 37 100.0 36 ..................................... CTGGCCAAAATCTAGGTTTATGCCCAGTTCTTCTTT 36175 37 100.0 36 ..................................... TTCAGCTATTCTACGCTCCAACGCTCTAGCAGCTTG 36248 37 100.0 36 ..................................... CGGCTAGTTGAACTGACCTAACAAACCAAATAGCAT 36321 37 100.0 35 ..................................... AAGAGTACTGGCGATCACTATCTGACGAAGAGCAA 36393 37 97.3 42 ......T.............................. ACGCAGAGGTGAACAACAAATCTCTGCAAGGCGATCGCCCAA 36472 37 97.3 35 ......T.............................. TTGCAACTATAAATTTGTCTTTTGGACTATCACTA 36544 37 94.6 38 ......T...............T.............. CGCGATGCAATAAAGGCTCAAATTGATATCGCGTCCAC 36619 37 97.3 37 ......T.............................. CTATACAGGATGCTTTGGTTAAAGGGGGTTTTATTCC 36693 37 97.3 35 ......T.............................. TGTTTAACAAAAGCGGCTTTGTAATTCTTGTGTGC 36765 37 97.3 37 ......T.............................. TTCTTTTTCAGTCATCCCTAGTTCTTTTCTAAGGATT 36839 37 97.3 39 ......T.............................. AGCCTATACCAAAGTAACTCTTTAGTGAGCCTACTTTTA 36915 37 97.3 34 ......T.............................. AGTCAAGTTGATAATCATAATGCTAACTGTCCAA 36986 37 97.3 37 ......T.............................. CCGAGAGTTAATGATGATCGGTTGGATACCTAGGGCT 37060 37 97.3 36 ......T.............................. CCATTGATGAGATGATACGTGATCTTACCTTTTTCA 37133 37 100.0 37 ..................................... TTAACAAAAACGGATCTACAAATCCTTGTATTAATGT 37207 37 100.0 51 ..................................... TTGATATAAGTCTTTCCCCTTTCCCCTTTCCCCTTTCCCCTTTCCCCTTTA 37295 37 91.9 0 ......C.......C.................A.... | ========== ====== ====== ====== ===================================== =================================================== ================== 24 37 98.4 37 GTTTCAACTTTCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AGCTTTCAAATTAAAAAGCCCTGAATTTATTTCAGGGCTTTGATTTATATGCGGTTTATTAAATGCTAGCCTAAAACATGTGCCAGCGCTTTTCTATATAAATAATCATCGCTCAATCGCTCACTCAAAGGTAGGGGAGAACTACCCATTTTTTACCCATATTTACCTGGGTATCTCCTTAATACTTTTTTTAGATTTGCCCGCACCCTACTGTGAAGTTTTACTGTAAAAAGTTACATATAGTTCATAAAACCTCGACAATAACAAACAATCATTTATGATTATGTAATCAGCTTGATGTTTGGCAGGGGAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCAACAGTTAGGGTAACTGCAATTATTTCGCAATAAGAGCGGCTGAAATTAACCAAAATTTCTCCCCCGCCAAAATCCCTAGCAGGAAGCTTGTTTAGTAACGGTTTCAGAAGGCAGG # Right flank : CAAAAGCGCTTTCAGTCTAGGCATGGCAAGATAAAAGGTTTCAATAGGACTTACGCAAAAAACCTTTCAAACCCTCATTCCTACTCTGCTTCACTTCCTTTTGCTATCTGACATCTTGCACCAGTGGCTTTATTGCAATTACGTTACCTGTGCGTAAGTCCTGAATTTTTGCGAAAAAAATATGACAATGCGCCTAAGTCCTATTTTCAATCAGCAGCCTTCAAAGAGGAACGCACTTTTTCAACGACTTGAGTAAGTGCGCCAGGTTCAAAGGGAGAAATCAGATTTGCCGATCGCACTAATTCTCGAAAGGATGCAGAACCCCCGCGATCGCATAACGCAATATACTCCGTCAACGCCTGCGAATAATCTTCTTGTGCTTTGGCCCAAAACTGCAACGCGCAACACCCCGCCAAGGTGTAATCAATATAGTAGAACGGCGAACAGTAAATGTGTTGTTTTTCTTGCCAGAGTCCGCCTTTATTGAGGTAATTCAAATC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTTCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : GTTTCATCTTTCTATTACCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 126828-126598 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000108.1 Amazonocrinis nigriterrae CENA67 scaffold138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================ ================== 126827 28 100.0 31 ............................ GAATGAAACTCCGCGATTTGTGCTATTGGCG 126768 28 96.4 44 ....A....................... GATTGAAACCAAATGACAACTGACAACTGACAACTGACACAAAA 126696 28 92.9 43 ..T.A....................... GATTGAAACAGTTGTGAATTTAACGAAAATAAGGAAGAATGGG 126625 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================ ================== 4 28 97.3 40 GTGACAATTACCTTTTTAGGTGATTGAG # Left flank : GTTATCCTAAATTGGTCTTAGCTGACGAACCTACCGCTGCTTTAGATAGTAAATCAGGGCGAGACGTTGTAGAACTGATGCAGCGACTAGCTAAAGAACAAGCTTGTACTATTTTGATGGTCACTCATGACAATCGCATTCTCGATATTGCCGATCGCATTATTCACATGGAAGATGGTCATCTAGTAGGCACTTCAGCTAAAACATGAGCCTTATTCATGATATGTCGCTGAACTAGAAATACTTACCGAAGCTGAACAGATATCTTATTCCCTGTTTAACTGATGCGATCGCGTAGGACTTGCCTTTTTAAGCGCTTATATATTCTTAACGCTAAAAACTAAGTTTTTATACCGCATTCATTATAAATTCCACTCCAAATATTCAGCCCGTTATTTAATTTACTAATAGAAGTTTCATTTTCATCTTCTCCTACCATCACATTCACAGTAAAAGGTTGTAGTTGCCTCCAATCGTAGTCATTGAGAAAACTTTGATAT # Right flank : TGAGGATTGAAACCATAATTTTTACATTATTCAGAATGGCGAAAGTATGCAGCACATCCTTCTATTGTTTAACACTAGCTTTGAAATTTTTGGCAATACCAGGGGTGTTAGTTGCCTTATATCAGGGTAGCGCCTTGGGTTATATTTTGCCTGATGGCTTTCAAGGTGCTGATAGTTCACGTCTGAGTTTCAATGTTAAAAGTAGGAGACAGTCTGTTGACACAATTGCAAACCTAGCGGTGCGAGAAACTCGCCTGTTGACCAGCAAGCCTCAACTCCATCAGAACCAAACACTGACATCAGTGCCAATTTTGTCTCAGGTTCTCGATTCACAACCGCCAAAACCGCCTCCTATTCCACAGCCACCATCAAAACCTGACCTTGAGCTTCCTCTTCAAACATTACCCTCTTCTGGAGAACGCTTTGACCTTCCGCAAAGTATCATTGTGAGCAAATTCGAGTTTGATGGCAATACGGCATTTAGCGACGAAAAGTTAAGC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACCTTTTTAGGTGATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 139115-137845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000111.1 Amazonocrinis nigriterrae CENA67 scaffold141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 139114 37 100.0 38 ..................................... AGCTTAAGGGTGTTAGTAGTGGAATACCTGCGTTAGAC 139039 37 100.0 36 ..................................... TGGTGATAGGTTTTGGGGAAGTACAACCAGGTTTAG 138966 37 100.0 35 ..................................... CTGCATTATAGAACTCAGCTTTCTTAGCCCAAGTC 138894 37 100.0 35 ..................................... CAGTTTTACTTGCCCTTTGATGATGAAACCAAGAG 138822 37 100.0 34 ..................................... AACATATTGATGGATAAAGCGATGCCACATCAAA 138751 37 100.0 36 ..................................... ACCCAAAATACAATGAAGATTTTAACGATTCATTAA 138678 37 100.0 37 ..................................... TGTTGCTTTTTTGCAATATTCTCGACACTAATATTAT 138604 37 100.0 34 ..................................... ATATAATAATTTCTTAAACTATCAATTGTGACAC 138533 37 100.0 36 ..................................... CACGATGAGACGTGAAATTAAAGTATTAAAATACAA 138460 37 100.0 38 ..................................... ACGCAAGCGCCAATTGATGTAGTTAATGCTGTCACTGA 138385 37 100.0 34 ..................................... ATCGCTATCTAATTGTTAGAATCCATTATTTTAA 138314 37 100.0 36 ..................................... TTATTAAATTTTGCTTCCTGTTGTTCTAAAGCTGTT 138241 37 100.0 35 ..................................... TTTGTAACTATTTTGTATATGGCAAAAATTAAGGA 138169 37 100.0 36 ..................................... CAATTATTTGCACGGGTAGAGATTTGCTTGGACGAA 138096 37 100.0 35 ..................................... TTTTAACTGGACAAATTACCTATAATTCGTTACTG 138024 37 100.0 34 ..................................... TGTGCGATGTTCTATACCTAATGGTGTAATTAAA 137953 37 100.0 35 ..................................... GCCCAGCCGCCGAGTCAATGATGAAATATAAACAC 137881 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 99.8 36 GTTTCATCTTTCTAATACCCCGCAAGGGGATTGAAAC # Left flank : CATTTCATTGATCAAAAACCCTAATCGTTTTTCACGGTCTTTGATAATAGAAGGTCGAAATACATCATCTGGATCGAATCCAGTCAAACGTCTCAATTCTCCCTTGCTAATTTCCAAGCCTATTAAGTCCGGCTGCACAGCTGGATACTCCTATGAAAGTGCGAGTTGCGTCTTTATACTCATTTTATGTGAGGTTTCGCTTGATTAACTTCGAGACTAGTTATGAATTGCCGCTACATTAGTTCATAAAAGCTCGACAATAACGAATAATCATTTTATGATGTTGTAAGCAGCTTGATGTTTGGCAGGGGAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAAGCAATAATTACAGCGTTTCAAAAGTTAGGATAACTCCAAGTGTTTTGCAATAAGAGCGGTTGAAAATAACCAAAATTTCTTCCCTGCCAAAAACCCTAACAGGAAGCTTGTTTAGTAATGATTTCAGAGGGCAGA # Right flank : AATCGAATGGAAACAGATACTCTCGTAGGGGCGTACAGCTGTACGCCCCTACAGTCGATTCATGTGTTCCAAATATTTTGGAAATGGTATTAGTTAAAACTGAAGAACTCCAACTTCTAAGCTGTTACACATTTAATACTATTTCACTAAATTCGTGATACAAATAATTTATACTCTGCACCTCTGCTCCCCTGCGGTATCAACATGTAAATTAAGTGCTTAACAGCTGATTACTCTAGCTTGCTAGTGGCGATGCTTTTGTTATGGCTGTTGGTGAAAATTTTGCTTTTACTGGAAGAGTAATTATAAACTCAGTTCCCTCACCTAAATTTGAGTTAACTTGAATCGTTCCGTTGTGTTTTTCTACTATAATTTGACGAGCGATCGCTAATCCTAATCCTGTACCTTTACCCACGCCTTTTGTAGTAAATGAATGGTCGAAAATTTTCTGTTTTACTTCTTTAGTCATTCCCTTCGCATTATCAGCAATAGATATTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTTTCTAATACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 17112-17297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000023.1 Amazonocrinis nigriterrae CENA67 scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 17112 37 100.0 35 ..................................... AAACTCAAGGGGGATATACAGCGCTTAGTAGTGTA 17184 37 100.0 40 ..................................... GTAGCTATTTGGCTTAATCTGACTCTTGGCACTATATTAG 17261 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 99.1 38 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GCTTATCGACGTGGAGAATGAAAGTTGTTATTGACACGAATGTTTTAGTTTCTGCTGTCATTAAGGGTGGAATACCAAGAGTAGTTATTCAGTTTATTGTTGATACTTATGACTGGGAATGGATTGTTTCTCAAGAAATTTTAACGGAATATAAGTCAGTATTAAGTCGTCCTAAATTTAAGTTGACAGAGGAAGTGAAAGCATCATGGTTTGAAATTATTGATGCATTTTCGACACTAATTGATGTCAATTTATCAATTGATTTTCCCAGAGACAGAAAAGATGCCAAGTTTTTAGCTTGTGCTTTAGCAGCAGAGGCAGATTTTTTGATTACAGGTGATTCTGATTTTAATCAGGCACAAATTTTGGTAAATACAACTATTATTTCTGTGTCGTTATTCAACAGGCTATGCGTGAGTTGACATTCACTTCGTAGTCTTGTCAGCGAATCTGCTTTCTGATACCTGAAAATCACCTATTAGCAATTCCAAGATATTAAA # Right flank : ATACTCCCTGTTTTTGCTTGTTTCCTATTCCCCATTCCCTATTCCCCATTCCCTACCCCGAAGGGGTTTATACCAATGCTTTAAGTAACGCCTGCAATTTAAGTTGCACTTCTGCAAACTCTTTATCAGGGTCGGAACCAGCAACGATACCAGCACCAGCATACAGCCTAGCGCGATCGCCATCTATCAATGCTGAACGAATGCCGACTATAAATTCGCAGTTACCCTCAGCATCTATCCAACCGAGAGGCGCAGCATATAAACCCCTCTCGAAATTTTCATAGCGACGAATTTCTGCACAAGCAATATCTCTGGCTGCACCAGCAACAGCGGGTGTGGGATGCAGTTGTGAGATAATCTTTAAGGGATGTACATTAGCAGGAACTATGGCGCTAATTGGTGTCCATAAATGCTGGATGTTAGATAATTGCCTGAGTCGTGGTGCTGATACCTGCGGTAACAAGCCTAGCTGAGTTAAACGTTGAGTAATGAAATCAATT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 53251-53728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000026.1 Amazonocrinis nigriterrae CENA67 scaffold26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 53251 38 100.0 34 ...................................... CAGCAGCCGAAGCCGAAGCCGCAAAACAGCAAGA 53323 38 100.0 37 ...................................... TAGGAAATATTGCTTTCAACTTAGCTCAACATCAAGC 53398 38 100.0 36 ...................................... GTGTCAACCGTTATGAAGACTCGCTTGTTGCCAGAA 53472 38 97.4 32 T..................................... TAACAGCCGAGGGGTTTTGTTTGACGGGAACA 53542 38 100.0 36 ...................................... ATGAATCTTTGTTGGGCGATCGCCTGTCTCTTCACA 53616 38 92.1 37 ......A...................G......G.... GGACAAAATACTCACATTGAATGCCACAACAGCGTTT 53691 38 89.5 0 T.....A...................G......G.... | ========== ====== ====== ====== ====================================== ===================================== ================== 7 38 97.0 36 AGTTTCCAATTACTAACTCCCCGTAAAGGGATTAAAAC # Left flank : TACTAAGTTTAAATAAGTATGCATAAAGCTGTAAAATAGAGAATATACAAGACAAAAAACTTTTGAGTAAGCAATGGCAGATTATTTCAAGCTAGATGTCTATTAAGTGCTTATTATTTATCAAAAAGCCTAAAAGATGCGCGCAAAGCATTTTAAAAAGAGCGTTTACAGATGCTGTGCTGGATAAAAACAGAGCAACAATTACAGTTTTAAGGCGAAAATCTACTTAGAAGTGCGTAAGTCCTAGAAAACTACTCGACAATATTAGATACACATATTATGATGTGGTAATCAGCTTGATGTTTGGCATGGCAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTACAGCGTTTGATCAATGGAAAAAGTTGCAAATTATTTGCAATAAAAACGGCTGAAAATGACCAACATTTTTTCCTGCCAAAATTCTTTATAGGAACCTTGCTCAGTAAAAGTTTTAGTCTAAAG # Right flank : CATATAAAATTGACACAACGTGCTGCATATAATGACATAACCAGCAATGACAATCAATGGCAAGCGATGTCTAATTACGCACGCCGATTTCAACAATTACCTTTTGTTTCTTACATTTCATTACTAGAAGCTTTTCCTGGGGCAGTGGGTGAGGGTGGTCGTGGTATATCTAAAACGGATAGACAAAATATGACTAGAGAAGCTTTGGAGAAAGGAGTAATTTTAATACTTGCCAATTTGTTTGACTAAAATTAATCTCTCTCAAATAATATGATTTGCTTTACCAAGCTACTCAGTAAAGTAAATACATAACTAATTATATAAAGATAAATTCTTGTCAGTTTATAAAATAAAAATCAAACAACTTATGGATGTTGATCATCATAATTTTGGGCTAGTATCACTCAAAGACTATACTTTTACTTTAGGCAAAGAATTGTCTTGTGGATATGATGAGCAAGGGCGTAAATGGGAAGAGCCAGAACTTACTGAAATTCGTA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCAATTACTAACTCCCCGTAAAGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 48461-50410 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000032.1 Amazonocrinis nigriterrae CENA67 scaffold32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 48461 37 100.0 37 ..................................... AAGCTATCGTATTAACTATTTCTTCAAGAGTCGTTAG 48535 37 100.0 36 ..................................... GGCTCATCTATGTTAAGTTCATCAGCAATTGTGTTG 48608 37 100.0 35 ..................................... CCAAGCATACTGATGTATGCATCAGTTTTTTTGAA 48680 37 100.0 36 ..................................... AATTCTTCAAAAAAAGACATAATTCAACTCCTTTTT 48753 37 100.0 37 ..................................... AGCTTCAAAGCCGCTTCACTGCCACCGACAGCGGCAA 48827 37 100.0 36 ..................................... TAACTTTTACTGACGGCATGATGCGCCTCGTCAATA 48900 37 100.0 38 ..................................... AAATCGGGGTGTGGAATCCAGGGATAACAAAAGACCAA 48975 37 100.0 37 ..................................... GTTTGTGAATTGCCCAAGAGTGTTATTTATTCTGTTC 49049 37 100.0 35 ..................................... ACTTCAACCAGTCTGGGACTGCTAGCAAGAATGTG 49121 37 100.0 34 ..................................... CTAATAGATATACGCTTACCACCAAAAAAGTTAG 49192 37 100.0 38 ..................................... CTACCATTAACTGAATAATTATCAACTCCAAATAATGT 49267 37 100.0 38 ..................................... TTAGAGAAAGTGCTGGATCAAGGAGATATGGCGATCGC 49342 37 100.0 36 ..................................... GTATGTCCATTGCTGGACACCAACTCGGCACAATTG 49415 37 100.0 38 ..................................... ACTTCTAAGCATTCTGCTATTAGCTTCAGGGTCTTTAT 49490 37 100.0 35 ..................................... TAAATCTTGCATAAGAAAAATTAATGCAAGGAGGT 49562 37 100.0 34 ..................................... CTCTCGGTATGTCATCTGGGACATGAGGGCTAGC 49633 37 100.0 39 ..................................... TTAATACGAGTGGAGGGACGGGCGATTGCTAATAATTAA 49709 37 100.0 37 ..................................... AAGAATGAGAATCATTATCTATCTTATCCCCTATCCC 49783 37 100.0 37 ..................................... CGTGTAAATCTGATTTGGAGCTTTATAAAGATGTAGC 49857 37 100.0 36 ..................................... TTTAATCTTATTTCTGGTTGCTTTAGACTTTTGAGC 49930 37 100.0 35 ..................................... CTCCCCATTAAGGAAATAATCAAAGCGATCGCCTT 50002 37 100.0 40 ..................................... AATTCTTTCGCAAGCAAATTCGTAGAAGTCTTTGTCAGAT 50079 37 100.0 37 ..................................... TAGGTCATGACCATATTAACAGCAGACAGGGATATAT 50153 37 100.0 37 ..................................... GCGATTTGAATGTTGTTGGCTTTGGCGAATAAATTTT 50227 37 100.0 36 ..................................... ATATATATAGCTTGCTATTTCTAACTCCAGGTCAAC 50300 37 100.0 37 ..................................... TGACCAGCTGCTTTTAGTCGAAAAGGCTCAATTGCAG 50374 37 97.3 0 ..........T.......................... | ========== ====== ====== ====== ===================================== ======================================== ================== 27 37 99.9 37 GTTTCACATTCCTACTACCCCGCAAGGGGATTGAAAC # Left flank : ATTCTTTGATGTTTGTTATGGGTTGGCTTCAGCCAAAAATGTCAAAGTGGGAGCGACTAAAGCCTAGGGGAAACACCTAAAGATGAAAGAGAAAGCTGTTGCAGCCTGCGCGTAACCCTAAAACGTGAAGACGGAAGCTGTTGCAGGGACGACGGAAGCTTTTGCAGCCTGCGCGTAACCTAACCCTTTTTGCTAGTATTAACTAAGTTGAGCAAAGTTTTACTGTAAAAAGTTACATATAGTTCATAAAAGCTCGACAATCACAAACAATCATTTTATGATTATGTAATAAGCTTGATGTTTGGCAGGGCGAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTTAATAGTTAGGGTAAATGCAACTATTTTGCAATAAGAGCGGCTGAAATTAACCAAAATTTCTCCCCCGCCAAAAACCCTCCCAGGAACCTTGTTTTGTAACGGTTTCAGACTGAAGT # Right flank : CAATTGATGGTGCGTTGCGCTTGGCGACAACACACCTTATACCAATTCTCTCAAATCCAGCAACACATCCAAACCCCAAAACCCAGACCATATCTGAGTAAAGACGATTCGCCGAATCGTCTCTACAATTACGAATTACGAATTGGTATTACCGATGGAGGATTTGGGTGAGGAACTGATCACAAGTATCAAAGCCTCATTAGCAATTTGATTTTCCCCTGCTCCCTTGCTCCCCTGCCTCATTCCGGTACAGACACAGGCACCCCGTTATCCGTGGGTTGCAATTGCAGGATAAAGGGAACTGCTTTTTTTACCCACTCGGAAGCAGATGGGTAATCAGCCGCTTCTTTTCCAAAACCGATTTGCAACATATCAGTATTAATGATTCCAGGATTGAGGGGAACAGCAGCCATCCCAGGGGGTAATTCTTGAGCTAGAGAACGAGTTAACCCTTCAATTGCCCACTTGGAAGCGCAGTATGGTGCAACTTCAGGGGATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACATTCCTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 52441-51244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000050.1 Amazonocrinis nigriterrae CENA67 scaffold50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 52440 37 100.0 35 ..................................... AACCTAATGCTGCTGTATCAACAACTACAACCAGG 52368 37 100.0 34 ..................................... TAAGGGTTAGGTATTACCCTCATCAATGCTTCAA 52297 37 100.0 39 ..................................... AAATAATTAAATTCAATTCTAAACTGCTACATCGTGCAA 52221 37 100.0 33 ..................................... GAGTACCTAGCCGCAAGCCGGGGGCATCGTCGT 52151 37 100.0 37 ..................................... TTCAACTAGCTTCTTGAGACTCTACAGCCACGCTAGA 52077 37 100.0 37 ..................................... GTTTCAAAGATGTCACAATTATTTTGTGCCCTACACT 52003 37 100.0 35 ..................................... CTTAGTACCATTGTTGTTACTAGCTGATTCTAAAA 51931 37 100.0 35 ..................................... TGCATCTTTTAGCGATGCATATATATTGATAGACT 51859 37 100.0 32 ..................................... AACTTCTACTGTCTTGCCTGCTATGTCTCCTA 51790 37 100.0 33 ..................................... GTCTTTATTTTATCGATAGCACTACCAAAAAGG 51720 37 100.0 35 ..................................... CAGCACCTTGCATATTTTCTAGGTCAGGTTGCTGA 51648 37 100.0 37 ..................................... CAGGCTAACAGAATTTTTACTAAGAATGATGATGTAT 51574 37 100.0 35 ..................................... TTCTACATCTGAGCTTTTACAAGATTTTTGAGTTA 51502 37 100.0 38 ..................................... GCAAAAAAACCTGATCAGTTTTATGAATTGTGTATGAG 51427 37 100.0 38 ..................................... AATTATTAGAAGAATCCTCACAAGAAAAGAAAGGGGTT 51352 37 100.0 35 ..................................... TTACAACAAGCCAAGGAAGTAAAAATTGTGGTCGC 51280 37 91.9 0 ..........A..........A..........A.... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 99.5 36 GTTTCAACTTTCTACTACCCCGCAAGGGGATTGAAAC # Left flank : CGGTTCCCGTCGATGGGGGACTGCCGAACCCGGGGGGTAATTCGTAATTGTAGAGACGATTCGCCGAATCGTCTCTACTCAGGTATAGTCTGGGTTTTGGCGTTTGAATGTGTTGCCGGATTTTAGAGAATTGGTATTACTCCCCTCTCCTTGTAGGAGAGGGGATGGGGGAGAGGTCAAAACAGCACTTGTCGAACTCACGTTAAATAAGCATGAAGTTTTACTGTAAAAAGTTACATATAGTTCATAAAACCTCGACAATAACAAACAATCAATTATGATTATGTAATCAGCTTGATGTTTGGCAGGGCGAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCCTTTCAACAGTTAGGGTAACTGCAACTATTTTGTAATAAGAGCGGCTGAAAATAACCAAAATTTCTCCCCCGCCAAAAACCCTAACAGAAAGCTTGCTCAGTAATAGTTTCAGAAGGCAGA # Right flank : TACCAGGGAAAGATGGATTAAGCGCCTAAGAGTTGTGGCTTATTTCAACTTACTACTACACTTTATTTCCTCTCCCCGTTGACGGGGAGGGGATTAAGGGGTGGGGTGCAATCTTGCTATAACTCTGAACTCAACACTTAGGACTTTTTAATTTTTCCCATTGGGACGCTGAATAATCGTTTCTATCACCCGACGCTTGGCTTTCGGATCAATTCCTACCAAACGCACATACTCATTGCTATATTCAGCTAAACTCGATTCTAAACTTGAGATGGCATCTGACTCTCCATCGATGTGGCTGTTAACACAACTTTGCCAAGAACCTGTACGGAAACGACGCTCATCTACGTGTTCAATGCTGATTTTGTAACCTTGAGACAAAATTTGTCTAATTTGTTCTTGTGTCTCTAGGCTCAAATGGGTATTTGATGCTTTCTGTTTTGCAGAACCATTGCTTGACGGCTGAATACTAATTTCCTCAGCAGCAGATGGTGCAGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTTCTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 28943-27067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000055.1 Amazonocrinis nigriterrae CENA67 scaffold55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 28942 37 100.0 39 ..................................... GTTGCTCCTGCTGGCTATGACCTTTGGGTTGCTGACCTT 28866 37 100.0 38 ..................................... TAGAGGCAATTTTATTTGTGAAGAAGATGATGGTCGAA 28791 37 100.0 36 ..................................... TTACTGTTATTTTTGTTACTGGTATTCTGCGTATTA 28718 37 100.0 37 ..................................... GAACTCAATCAACCAGTGTAGATAATACTATCATTAC 28644 37 100.0 38 ..................................... ATGAACTCTATTATCACGGAGAAGTAGAGACGATTGCA 28569 37 100.0 39 ..................................... ACAGATGGGTTATTTTCTAAGAAAAACTTCAGCGTGCTT 28493 37 100.0 36 ..................................... GGGTCTAATATCTACAGATTGTCTGACACGGACAAC 28420 37 100.0 37 ..................................... TCGCTTCCCACTTTTTCGTACTCGATAAATTTCTTTG 28346 37 100.0 37 ..................................... AGGTTGTACCCACCTGGCGACAATTTGCAGATGGTAA 28272 37 100.0 34 ..................................... GATAAATTTAATTGAAACTTTGGTAAGCCTTTTA 28201 37 100.0 35 ..................................... CACATTATTTTAAATTATTCTTTACTAACAATTCA 28129 37 100.0 36 ..................................... CAATAATTTTGATGCAGATGGGGCGTTTGACTTGGA 28056 37 100.0 35 ..................................... CTTTTGTTAGTGCTGTATCTTCTGCGAACAAACTT 27984 37 100.0 39 ..................................... CTGCCGATTGGGATTTACGCAGCGATAAAGATAGCAGCA 27908 37 100.0 36 ..................................... ACGCAGCCGCTATCTGGGCTATTTCCGATCGCGTGG 27835 37 100.0 38 ..................................... AACTGAAATACTTCTCTTTATACTTGAAGGTGACTAGA 27760 37 100.0 35 ..................................... CCATAGTTCAGATTTTTAGCCAAGTCCCTACTGAA 27688 37 100.0 36 ..................................... CTAATTAAGCACTTAAAGTCTCAAGCGTGGAGACAA 27615 37 100.0 35 ..................................... TGGCATTACTACGTTACGTCGAACAAGGTTTTGCC 27543 37 100.0 35 ..................................... TTTGTTACTATTTTAGAAAAATTAAGCTCCTTAAA 27471 37 100.0 37 ..................................... CACATAGATAATCACAATCAAATGCGATCGCTCTTAA 27397 37 100.0 36 ..................................... ATTCTGGTGTTAGGCTTGGCCCACTTGATGCGTTAT 27324 37 100.0 36 ..................................... TTTTTTCGATACTATCTGTGTCGTGAACACTATTTT 27251 37 100.0 35 ..................................... AAAAATCTTTTATTTAATTCGAGATGTTCGAGTAA 27179 37 100.0 39 ..................................... AATACTCTTAGCGGCTGGGGTCTTTTCAAATAGCTTATG 27103 37 97.3 0 ...............T..................... | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 99.9 37 GTTTCAACTTACTAACTCCCCTCACGGGGATTGAAAC # Left flank : CCTTTGACGGAAGTCAAAGTCTCCCCTCCCCGAACTTGCGGGGAGGGTTTGGGGAGCCAGTGCGCTATTGCGCTCTGCCGACAGCCGTGCATCTGGCGTGGTGGGGTACGATGACCGTGGGAATTATAACTATTTATCCGAGCTTCATAATACAATTCTCTACAATACGGCAACAAATTCAAACCTTGAAGCCTAGATACAATCTGAATTTCTGAATTGTGAATTGCAAATCGGTATAACGCCCGAAAACTACTCGACAATATTAGATACACATATTATGATTGGCTAATCAGCTTGATGTTTGGCACGGCAAAGCGAGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTACAGCCTTTGAGCAATGCTTATAATTGCAAATAATTTGCAATAAGAGCGGCTGAAAATGACCAAAATTTCTCCCCCGCCAAAACTCTTTCTGGGAAGCTTGCTCAATAATAGTTTCAGACTGAAGA # Right flank : TTGAACAAAGATGAATAGTACTGAAGAGAGAACAGTAATTGATACTAAGTTGTAGTTTGAAGTAGTACGATTTCCTCTCCCCTGCTCCCCTGCTCCCGAAGCTACTATCTCTGAATGCTACTTGGTTTGATTGCAGGGGATTTTCAGGAATAGCGATCAATGAAAGTCTACTTTGCTGACTCATTGACTTTTACTCAGCACTCAGCACTTTCAAGTCAGCCTACATGAACTGCATACACTTGTAAATCCAGCTTTGGAAAAAATCTAGAACTGAATTTCAAAAGCATTGAAGAATTGATTATTAATCTTAATAGTTTGCCGAGAAATATTAGAATAGCGGTGCGTAACCACGGTGGCGGACATATTCATCTGATAGCGCAGCCATCTAGTAAACATATTAATGGTCTTTTGTTGCGTTTTTACATAGGCTTTTAATTGCTAATTAGATTTTCGTCATCAACCATTAGTAATAATCTATTAGCTGTTTTTATTTATAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTACTAACTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 44060-41837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000055.1 Amazonocrinis nigriterrae CENA67 scaffold55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 44059 37 100.0 36 ..................................... GCTTCTCCTGACAGCGTTAGTCAAGCTTACTACGTT 43986 37 100.0 32 ..................................... ATAAAGCTACTCGAATAGAAAACCGTATTCAA 43917 37 100.0 33 ..................................... GACCGTTAAGATACGCGATAAGTTTGGTGTTAC 43847 37 100.0 35 ..................................... AAAGCTGACTGTGCATGGCTTTCAACACTTGTAGT 43775 37 100.0 35 ..................................... TTGTAGCTACGGGTTTATTCGGCTTGGATGATACA 43703 37 100.0 33 ..................................... TTTCATCTGTTAATATTGACTCTAATCTTTTGA 43633 37 100.0 32 ..................................... AATAGTAATGAGGGTACAATTAGCCGTGGCGG 43564 37 100.0 34 ..................................... ATATGACCAAGCTTTTATGCTTGATTCACACTAG 43493 37 100.0 37 ..................................... TTCCATCGCTAGCCCAGCCAGAAAAAATCACCAAATC 43419 37 100.0 37 ..................................... TAGCATAATGGGAAGGGATACTACAAAAGACATTCCC 43345 37 100.0 40 ..................................... TTTATTTTTGAATAAAGGACTAACAGACGGAAGCATTTCG 43268 37 100.0 34 ..................................... TAGATCATATGCTTTGACGGTAACGAGCTAGATT 43197 37 100.0 36 ..................................... GGTCATTGCGTCCAGCCGACAACAAGGAACACGCGC 43124 37 100.0 40 ..................................... TCTTGACAGTTCACAGTAACTCGCTACCGAAGCAGTCTGA 43047 37 100.0 36 ..................................... CTCAATCACAACTACTAGATAGAGTTTGGGGAGTAA 42974 37 100.0 36 ..................................... AACAACTATCTCCACAGGGAGTAGTACCGCCTTTGC 42901 37 100.0 39 ..................................... TTGAACTATCTATATCATCTATTGCTAATGAAAATATAG 42825 37 100.0 38 ..................................... TCGTTGGTTTTAATCGCAGGGTGGCGGGAGGGTGCAGG 42750 37 100.0 37 ..................................... CAACCATTGGCGCAATGAATGCACCTTGTAATGCCAA 42676 37 100.0 37 ..................................... GAGAATTGGAGGAACGGGTTTAGCGAAACTTTGCAAA 42602 37 100.0 37 ..................................... TAGGTTGGGGCTTCGGCGTATACCCCCGCGTTGCCGT 42528 37 100.0 35 ..................................... AAAATTGAATTACAGCTTGTTAGGTTTGGCGATGG 42456 37 100.0 36 ..................................... CCTTGAATTTTTTGCCCGTTGAGCATGAACCAAATT 42383 37 100.0 36 ..................................... AGACAATAGGCTGTGTACGCTCATCACCTAATTTAC 42310 37 100.0 34 ..................................... TTGATACTAAAATCTTAGTTGAAATTGGATTCAT 42239 37 100.0 37 ..................................... CCTTACATAGTTTCAACAGGAGCAGGAACACAAACAT 42165 37 100.0 36 ..................................... GTCGTGATCTTCCGCGTGTCTTCCACCTAGATGTAT 42092 37 100.0 35 ..................................... ATTTCAGGGTTGCTTTTGAAAAGTATCTTCGACAA 42020 37 100.0 37 ..................................... AAAGCTAAACCATACGGAATTTACGTTTTTCGTGAAT 41946 37 97.3 36 .......................A............. TCGTTGATTTGTTCAATTGATGAAAAATCAGATTGC 41873 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 31 37 99.9 36 CTTTCAAATTAATGAAACCCGTTCACGGGATTGAAAC # Left flank : TTGTTTTACCTCATAATTTACGATTTGCCAGATACTAAAGCCGCGAATAAGCGGCGAACAAAACTACATAAAATGCTCTCTGGTTATGGCACTTGGACGCAATACAGCGTGTTTGAATGTTTTTTAACTGCGGTGCAGTTTGCTAAGCTAAAGGTGCAAGTTGAGAAGTTGATTAAACCTGCCGAAGATTCAGTACGTATCTATGTATTGGATGCTGGAGCAGTACGTAAGACTATTACCTACGGTTCTGAGCAACCTCGACAGCAAGAAACCATTATATTATGATGGCAGTATGATGCTAATAGAATTTTTTGGCGGGGCAAAGCACGGGCGAAAACCCCCCACCCCCCGCCAAATCGCCAGAACCTTGACATATCAATAGTTTCAGAGTTTTGAGATGAATCTAGAGCCTGTTCTTAAATGCCGGAAACGGACTTTTAAACTTGCCCCGCCAAAAATGCTCCGGGGAATGGCTCTATAATTAGCTTCTAGCTGGCGGA # Right flank : CAAACTTAGAATCAATGTGTAATGTAATAGCTTTTACACTTTCAAATAAATTTAATTCATTTGAAGCTTTGTTAAAGCGCGTCCTGAAGGGTAAAAACACTAAATAGCTCGGATGCAGCAAAAAATATTGTCGAAATGCTGCTTGCTTTTATTATTTGGATCTCCTTTACAGATACACCCGTAACCACGATGAGTGAGATCTCTACCTTTCTGCAATCAAGAAGATGTAGAGATCAGTATTTGAATGTAAAGCTATATGTCAATAATGTGAAGAAAACGCAAAGTTATTTGTTAAGTTATGGACATTTACTTAAATGTGCGGTAAGTAGCTAATATGAAGTTAATTGAAGTTTCGTATCCCTATTTGAATGACGTTCTCACAATCGACCACATTGGCTAGATTCCCAGAAGACTGTAATTTAGATAATCTCAGCAGTTACATCAGCAAAGTAGAAATTTTTGCACATGAAGCTTTTCGTAACAAAAACAGCTATGTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGTTCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1065-1794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000094.1 Amazonocrinis nigriterrae CENA67 scaffold123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================================================================================== ================== 1065 37 97.3 39 ............T........................ AACGTTGTGCTACCATCTCCTGCACCGTAATATGTACCG 1141 37 97.3 37 ............T........................ GTTATTGGCTACGAAAGCCTCGACTAGTTGCACCAAG 1215 37 97.3 36 ............T........................ ATCAACAATTTATTCAATATACTTAACTGCGTCAAC 1288 37 100.0 39 ..................................... AACTACCAACTTGATTCAAGCACACATGGCAGGTTTTTG 1364 37 97.3 38 ..................T.................. ACCTCTGTCCTTTATCTTCTGCCACACTAAAGTTTTCA 1439 37 100.0 39 ..................................... CCTAAGCGTAAGTTTGTGCTTGTACACCTTGTCTCCTCA 1515 37 100.0 36 ..................................... GAAGTGATAGTCAGCGGCTTTAATTTCTGCCTCCAC 1588 37 97.3 133 ...........................A......... TGGAATACAATCAAGTACACCCATACTGCCATAGCGTTTCCATAAACTCAGGACTTACGCAAAAACCACGAAAAAGCTTAATTTATCGAACCGCCAAGGCGCCAAGAACGCCAAGAATTCGTAGAGTGTGCGT 1758 37 73.0 0 AAG...TA....T.....T...........C....CA | ========== ====== ====== ====== ===================================== ===================================================================================================================================== ================== 9 37 95.5 50 GTTTCCATAAACCATTTCCCCGCAAGGGGATTGAAAC # Left flank : CGATGTATAGGCGGTTGTTGGTGCTGGTGATCCAGTTGCAGAACTGCTCCCATACGTTGGCGCTACTGCGCTGTTGTAAGGTTGCTGTCATGGTTTTATAAGTGCGTTTGTGTTGTATGTATCAGGCGCTTTTGTTTTTGCCTGTGATAGTAATTTACACTGCTTTACAAAAGTTTATCAAGTGTTTTAAGTTTTGTTATGGTAATTGCTGTTATTAGCTTTGCTTATTTAAGCGTTCACTTGATACTCCCTGGACAAGAGCAAGCGATCGCATGTATGATTAGTTCATTAACTTGATGGTTGACAAGTCGAAGTGGGGGCAAAAACCCTGGAGACTCGTCAAAATCCCCAGAACCTTGACAATATAATAATTACAGCGTTTCAATAATGCGGGAAGTTGCAAATTATTTGCAATAACAACAGCTGAGAATGACCTTTTTTTTCAACCCGTCAAAATGCTTCCCAGGAAGCTTGCTTAGTAACAGTTTCAGCACCAAGCA # Right flank : AATACAGTCTTAAAAAAATGTCAGGAAAAGCATAGGGTTTCCATTAACCATATATCCTTATATAAATAGACCCCCATCTAGTCATTGCTAAACAATTTGGACAGATGCGTTCGCTGTGGGGAAAACCAGCAGCAAAAATGGCAGTCCTTCCATTAACTCCATGTTGAAGCAACTGGCATCGCTAAGAACGCCGAGAATTCGTAGAGTCTGCGTGAGTCCTACCACTGTTATACAAAGCCAAAAAATTTTCCTTTACCCTCTTGACTCTCCAGTAAGCTGGAGACTTCACAATGGAATTAGTTGATCAAAGGAAAATAAACATGAAACTTCAGCTAACAGTTCCTAACATGGCTTGTTCTGCTTGTGGAGAAACCATTACAAAAGCCATCCAAGCAGTTGACCCTACAGCTGAGGTTGGAACCGATCCAAAAACGAAGCTAGTCAGCGTCGAAACTCAGGCATCCGAAGCAGCAGTGACAGAAGCAATAATAGCTGCTGGC # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:-1.20, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATAAACCATTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : GTTTCCATAAACTATTTCCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 25679-23437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000057.1 Amazonocrinis nigriterrae CENA67 scaffold57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 25678 37 100.0 35 ..................................... AATATAAAATAAAAATTAGCCAGCAATAACGCTGG 25606 37 100.0 36 ..................................... ATTATATCACTAGCTGGAGCGTGGTACAACAAATAC 25533 37 100.0 38 ..................................... ATGCTAATGCAGGAATAGACCTTCCAGCATCTTTCTTT 25458 37 100.0 35 ..................................... AACATGTAGCGATATTCTACAAACGAGATCCACGC 25386 37 100.0 37 ..................................... AACTGGAATAATAATTGATTCACAAGTCCCACCCCTG 25312 37 100.0 36 ..................................... TACTCAAATTTCTTTAATTCCTCTTGACTAGCCCAT 25239 37 100.0 37 ..................................... GATTGGCTAGATTAGATTTATGGGCAGCGATCGCTAG 25165 37 100.0 33 ..................................... ATGGAAGGGCAGATGTCAATAGTAATGCAAAGG 25095 37 100.0 35 ..................................... AATAAATTTTATCTTTACGCATAACATTACCTCAT 25023 37 100.0 33 ..................................... CAAAAATCAATGATTTTAATAGGTGTGTGCCGA 24953 37 100.0 37 ..................................... ATAAGTTTTTCGCCCAGCAAATCAAAACTGCCAATTA 24879 37 100.0 36 ..................................... AACTCGTTCACAGGCGAGGAGATTGACCAAGCTTAC 24806 37 100.0 38 ..................................... ATCTAGGAGGTCATTAACCTGCCATATTACTGATTCAC 24731 37 100.0 36 ..................................... AATATATGACTTACAGTCCCAGGACGCATGATTAAG 24658 37 100.0 32 ..................................... ATTGCTGTTGGCTCCCACTGAAAAAAGCACAG 24589 37 100.0 39 ..................................... TGGGCTTCTTTGCCCCCACAAGATAAGCATCACTTCAAG 24513 37 100.0 35 ..................................... ATTTCTTCTAATTGATTTTGGTATTTACCGTTACG 24441 37 100.0 36 ..................................... ATAAAAGTCTCTTAAAGCATGATGTACCACACCACT 24368 37 100.0 36 ..................................... AACAAATTCTGGTTGTTTGGCAACTGTCCCAAGCAT 24295 37 100.0 37 ..................................... ATATTTTATAAAATATCGCTTGACTTTTGCATATCAC 24221 37 100.0 35 ..................................... TCAAAATTGATTGATAACTGAATTAAAATTTAAAA 24149 37 100.0 36 ..................................... ATCGCAGGTGACACCGTTTTTGTGATGAACGGTGTA 24076 37 100.0 39 ..................................... GCTTTAATTGAGGCAAAAGCACCGCTACTGTTATCAAAT 24000 37 100.0 37 ..................................... CCGCCACCCCAACTCTTACAGCTATTTGGCTTAATTT 23926 37 100.0 47 ..................................... TCACAAATGCAAGCATGATAAATACCCTGGATATTGCTGCATTCCAT 23842 37 100.0 38 ..................................... AATTGCAACTGCTAACTAATGTAATACCAATCGTAGAT 23767 37 100.0 36 ..................................... GACAACCCATGAAACCCTGAGAAGCCCTAGGGTAGC 23694 37 100.0 35 ..................................... AATAGTCCCTCTGCTTCTGGGGCATTGTCAAAAAC 23622 37 97.3 38 ..............................A...... TTTTGCTAATTAAAGATTATGGCAGAATATCCACAAAT 23547 37 97.3 37 .............T....................... CTTTCCTCTGAGAAAATCGCCGGCGGCAGTGGCTTGA 23473 37 94.6 0 .............T........T.............. | ========== ====== ====== ====== ===================================== =============================================== ================== 31 37 99.7 37 GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Left flank : AGTACGTGGTTCTCATGGTCATATTACCAATTCTCCAGCTGATGGGCCTTTATTTATCACTCAGCAAACTCACTTAGTCGAGCAAAACTCAATTGCAGCGACTGATGTTTGCTCATTGATTCTCAGACATTTAAAGTTAATGTAGATCAGATTTTTCGACTTATGTGTATACCGTCATGGAAATCACATCTTTGCTATTTACTAAGTTAGTACGAAGTTTTACTGTAAAAAGTTACATATAGTTCATAATACCTCGACAATCACGAATAATCATTTTATGATTGTGTAATCAGCTTGATGTTTGGCAGGGGAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCACAGGTCGGAGTAATTGCAACTATTTTGCAATAAGAGCGGCTGAAATTAACCAAAATTTCTCCCCCGCCAAAAACCCTGACAGGAAGCTTGTTATCTAACGGTTTCAGATTGAAGG # Right flank : ATACCGAAAAAACTCTAGTTACTCAAAAGGATTGGAAGATGTAGAAGCAGGTAGAACCACTAGCTTAAGTGAATTTGAACAAGAAATGCGACAAAAGCATGGTATTTCTTGTTAGAACTACTCGAACAGCAATTCACGAGGAAGAACAATAAAATTCGTCTCACGCAAAGACGCAAAGGTACAAAGAAAAAGAAATGTAACTTTGGCATTTCATATTCAGATTTAGTAATGCCAAAGTTTTAGGAACTTCCAAATAAAAAATATTCTACTGTTCACAGTGATCAGTAGACCTCTTGCAAAAGTCCTTCTTAGCGTTCTTTTCTTTGCGTCTTTGCGCCTTTGCGCGAGACAAAAAAAGATTTATGCAATAAGTCTAGTTATCAGTCAACAGTTATCAGTCAGCAATTGAAATTCCCTAACTATTCTGTTTATTAAATACCTCTAAAATCTGCCGGCAAACTTTTTTCAGCTTATCGCCAACTTCACCAGAAGGCAAAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 19819-22801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000067.1 Amazonocrinis nigriterrae CENA67 scaffold67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 19819 37 100.0 37 ..................................... TATACCGTCATTGGTCGGATAAAACGCAACGTAGTTT 19893 37 100.0 36 ..................................... AGAAAAATTGTTTGATATCGATGTAGCAAATAATGA 19966 37 100.0 39 ..................................... AATCTTGACGGTTCAATATCTAGTTGGGGCAACGGTTCT 20042 37 100.0 37 ..................................... CATTGATTTTCTATATTTAAGTTCACCTTCGTACAAC 20116 37 100.0 35 ..................................... TTGTCGCTACCTGCAACCCACCAAGTACCGAGCAA 20188 37 100.0 37 ..................................... ACCAGCGAGGCATAGGTACAGATAATAAGGAAATCAA 20262 37 100.0 35 ..................................... ATGTAGGGATTAAATGTTTGCGGGATTGCAACTAT 20334 37 100.0 37 ..................................... TATTCTGTAACCCACCTTCAGTTTCATTATACCCAAA 20408 37 100.0 34 ..................................... CAAAAGAGGGAGTGTGTAAACATATTTGGGCAAC 20479 37 100.0 38 ..................................... CTTTTCCTAGTTTATTTTTAGACATAGAATAATTTAAA 20554 37 100.0 35 ..................................... CGCCAGCCGTTGCTAGCTTAACCAACTTTTGCTGA 20626 37 100.0 35 ..................................... TCTACCTGCAACTTTTACAGAACCATCATTTGACG 20698 37 100.0 38 ..................................... ATTGAACAATTAGAGGCAGCACAAATTAAACCCGAAGA 20773 37 100.0 38 ..................................... TCGTCAATTACCGTGTCTTCCAATACTAAACAGTGCTG 20848 37 100.0 36 ..................................... CTTGCGAAGCTTCTTCTTTAGGTTGCTCAACTACAG 20921 37 100.0 36 ..................................... ACCGAAATAAACGCAATGATGCTAAATCCTCTCAAG 20994 37 100.0 35 ..................................... AGGCGGCATTCAAGGTAGTTGAAGAGAATTTAAAC 21066 37 100.0 38 ..................................... CATCAAATTCATACCATTCATTAAATGTAATTGAAGGT 21141 37 100.0 37 ..................................... TATCAAAATATTTATCTATCTTGTGCCTGGGTGATAC 21215 37 100.0 35 ..................................... TGAATCTGTAGGCGGCAAGCTTTGGGAATATCGTG 21287 37 100.0 44 ..................................... ATTCTTTTTCAAGAGTAGCAATGTCAGCGCTGACACGCTTACCA 21368 37 100.0 37 ..................................... TTGTGTTATTGGTTTTTCCATGTCTCTAACCAAATAC 21442 37 100.0 37 ..................................... CTGGCAATAATTCAACACCAGCACGTATGCCAAACAA 21516 37 100.0 41 ..................................... TCGCAAACAGATTTCAATTGTTTAGCTCACGTATATTGCAA 21594 37 100.0 33 ..................................... GTGTAACCGACGCTTAATTTGACACTGCTCAGA 21664 37 100.0 35 ..................................... CATCATTGACTACACAGTAACCAAAAGGCGGTTGT 21736 37 100.0 35 ..................................... TAAGACTAGTTGTGCCATTTGGTAATCCCAGTCTT 21808 37 100.0 38 ..................................... TGTTTAATCATAAATCCATCTATTTATTTGATTTGCAA 21883 37 100.0 36 ..................................... ACGGATTATTAGAATATCAAGATAGAGTATTGGTAC 21956 37 100.0 37 ..................................... CCAATGTGCAGTGAAATCGAGACACAAAAGGGTCGGA 22030 37 100.0 38 ..................................... CTTAAGGCTGTAGGCAAGGCAATCGAGAATCAATTGCA 22105 37 100.0 35 ..................................... GGCCACAATCAAGTGGTTGCAACCAATAGTTTTAT 22177 37 100.0 39 ..................................... GTCATTGACCACCACAAATCAGCCCAAGCAATGCTACAA 22253 37 100.0 33 ..................................... TCAAAACTACAGAGGTTGAATCGTTTGTTTTTG 22323 37 100.0 35 ..................................... CGGCTGCTGTTTTCCTGGTCAATGCCTTGTACCGG 22395 37 100.0 38 ..................................... GGTTTACTAGTTTTACTATGAAACTTTCGACAATCGAG 22470 37 100.0 37 ..................................... ATTTCTTCTACTTCACGCCAACTGAAGATGAAAGCGA 22544 37 100.0 37 ..................................... TAACCAGGATAGTAATAATCTACGACTTGATTATCTA 22618 37 100.0 35 ..................................... CTTTTCGCTGGATGCTATGCGGTTCAGTTTGTCGA 22690 37 100.0 38 ..................................... ACTTAGACCGTCTTCTGGCAAAATTACAAGAACAAGCA 22765 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 41 37 100.0 37 GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Left flank : AAGTGTTATAACATCATTGAACCATACTTACAATGATGCGTAATGATTATCATTATGAAGTAAAGAAGTGACAGTTAGCTAGCTGCCGCTTCTTTACCTCTTTTGTAGTAAATTCAATAACTATGGTTCAAGTTTTGGGTGACAGTCTCTTTTGAATTTTCTCTCCTGCTTCCCTATTTAGAGATGATTTATAAAGTAAACCTTAAATAAGGGTGAAGTTTTACTGTAAAAAGTTACATATAGTTAATCAAACCTCGACAATAACAAACAATCAATTATGATTATGTAATCAACTTGATGTTTGGCAGGGCGAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAATTGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCAACAGTTAGGGTAACTGCAACTATTTTGCAATAAGAGCGGCTGAAAATAACCAAAATTTCTCCCCCGCCAAAAACCCTAACAGAAAGCTTGCTCAGTAATAGTTTCAGACTAAAGA # Right flank : CAAAAGCATTGCCCTTTTTCCCGTTCCGTCCTTTACCGTTTCAACTTACTACTCTCCTCGCTGCGGACAGGCTTTTTGGATAGCTTTTACCGCCCAAACACTGACAATAAAACCAAGCCTTAGGTGGAATTTCAAGACTTGTGTGTACACCGTAGCTTTAGTAAGGCGGGATGAAAGTTTTGTAGGGTGCGTTATGGACTCTTGTCCTAACGCACCGCAAATCTCTGGCGGTGCGTTACGCTGGCGCGATAACGCACCCTACTAGCACGACCGGGCTAAAATAGTGCAATAGGATAGAGGTGTTTGAGTTTAATACGGGCATCCTCTGTTGTGAAGCGCCATTGAACTTGGCTATTCGTGCGATTACGCTGGTTCTGCCAGGCAGATAACTCCTTTTCTAACTCGGTGGCAGAGGAAATACGACGGTCAAGACATTGTTGAGAAAGGACACTTAACTCAATCTCGGCAACATTCAACCAACTACCGTTACGAGGGGTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 7099-7648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZC010000077.1 Amazonocrinis nigriterrae CENA67 scaffold77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7099 37 100.0 37 ..................................... ATTCTGCATCGTCAAGAAGTAACGAAACTTCTTACGT 7173 37 100.0 35 ..................................... AATTTTTTAATTAAGGTTTCTTTGTTTGGTTTAGT 7245 37 100.0 37 ..................................... ATATTTTTTATAGAAAGCTTTTTACCTGAAACTACCA 7319 37 100.0 35 ..................................... GATGTCAGAATGCGATCGCAACGCGAATACGAAGA 7391 37 100.0 37 ..................................... GCGCGTTTAATAGGATCAATGTATCGACCAAGAGAAC 7465 37 100.0 37 ..................................... AGAATTTTCCATGATAATTGTGGAGAATTTTTGCCTA 7539 37 100.0 36 ..................................... TTTGAATTGTTGACCTGATCGCTTTATCTAAATAAG 7612 37 78.4 0 ............A...............T.AA.CTGT | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 97.3 36 GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Left flank : GTTTATTGAATTCGGGATGTTGTTTATTGAATTCGGGATGTTGTTTATTGAATTCGGGATGTTGTTTATTATTTTGGTGCGCGATTCCTACGGCATAACACAACGCCAGTTTGCTCAAGTTGGGAAACCCTTCCTGTGCAACTGGCTCCCCTACACATACTTAGATTTTTTCACTAATCGAATCGGATTCCTATATATTTACTAAGCGATCGCGAAGTTTTACTATAAAAAATTATATATAGTTCAGAAAACCTCGACAATCACGAAAAATCATTTTATGATTATGTAATCAACTTGATGTTTGGCATGGCAAAGCGGGAGCAAAATCCCTAGAGTCCCGCCAAAATCGCCAGAACCTTGACAAATGAATAATTACAGCGTTTCAATTGTTAGGATATATGCAAATAATTTGCAATAAGATCGGCTGAAAACAATCAAAATTTCTCCCCCGCCAAAATCCCTAACAGAAAGCTTGCTCAGTAAAAGTTTCAGACTGAAGA # Right flank : TTTTTTCGCGTTCTTCTTTGCGCCTTTGCGTCTTTGCGTGAGGCAAAAAAATATTTCTAGAACAGGCTTAATGTTCTACAAATCCAGGTTGAACATTAACCAGCTACATAGCATCTTTAGTCTTGCTTGCCCAAATTAGACATCATTGTTGAGCGTTATAGCTGGAGTACTTACGAGTATAATAGCCTCGATATTATTAAAAATAAATCGCCGCTCATAACACTTTCCTTGGCGCCCTTGGCGTCTTGGCGGTTCGATATTCACAACTATGTCCACCAAACCAACAATCCAAAGCATATACACCGATGGTGCTTGCACCGGCAACCCTGGCCCTGGAGGTTGGGGCGTTGTCGTCTACTTCGACGATGGTTCAATCCACGAAATGGGCGACGCATCCCAGCGTACCACCAATAATAAAATGGAAATGCAAGCCGCGATCGCAGCCTTGCAATATTTCCACGCATCAGGACAAACCGAACCCATCACCCTGCATACTGATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTACTACTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //