Array 1 150259-148422 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAOW01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-149-15 149_15_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 150258 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 150197 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 150136 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 150074 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 150013 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 149952 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 149891 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 149830 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 149769 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 149708 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 149647 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 149586 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 149525 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 149464 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 149403 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 149342 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 149281 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 149220 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 149159 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 149101 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 149040 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 148979 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 148918 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 148857 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 148796 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 148735 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 148674 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 148573 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 148512 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 148451 29 93.1 0 A...........T................ | A [148424] ========== ====== ====== ====== ============================= ======================================================================== ================== 30 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 167790-166541 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAOW01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-149-15 149_15_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 167789 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 167727 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 167666 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 167605 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 167544 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 167483 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 167422 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 167361 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 167300 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 167239 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 167178 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 167117 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 167056 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 166995 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 166934 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 166873 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 166812 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 166751 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 166690 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 166629 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 166568 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //