Array 1 7782-8054 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCW01000072.1 Lactobacillus crispatus DSM 20584 = JCM 1185 strain DSM 20584 Scaffold72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7782 29 100.0 32 ............................. TGTCGATACTGAAAATTATTTTGACGAGGTCG 7843 29 96.6 32 ............................C AAGTCAAAAGTACGCAAACAGCAACCCTAATT 7904 29 89.7 32 ............TA..............C TTGTTGACGCTCCCACATCAAATGCAAAATCA 7965 29 93.1 32 ............TA............... GAGCCTTCCTGACGGCTGACTACGTGACACTA 8026 29 79.3 0 ............T.A........T.AGT. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTATTCTCCACGAGTGTGGAGGTGATCCT # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTA # Right flank : TATATGGAGAAAGATATGTTTACAAAGCAAGAATTTAAGCCGCAGGGTTATAAGGAAAATGTCGAAAGGCTTAAACTTTTTTATCACAGTGAATTTTATCAAGACTTGAAAAAGTTATATCCTAATTATTTGAATAAAGTTGAAGATGCTTTATATCAAGATCCGGATTCTAGTGATGAATTTCTTTATATTGCATTAAGTGAAAAATATAAACTCGATGTTTCTAAGAAAAATAACTCTTTTTGTCTTATTGATAAGGTGGGAAACAGTGAAATTGCATTAGGTGCGGATGCTATTTGCGGAGTAAAATGTTTAGCTAAATACTATCCTGATCTCGATGACTGGATCGATGCTTATGAAACAATACGAAGTCAAACATCCCTGCATTTTGTATGGCCAAGACATAAATTACCAGCGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTCCCGGATTTAA # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31513-31657 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCW01000016.1 Lactobacillus crispatus DSM 20584 = JCM 1185 strain DSM 20584 Scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================== ================== 31513 23 100.0 38 ....................... AGAATTAGACCAGCGTTTATAAGTCCATATTAGGATCA 31574 23 100.0 38 ....................... TAAGATCATTAAAGGCATTCTGCCACTGTTGAGGATCA 31635 23 95.7 0 ......................A | ========== ====== ====== ====== ======================= ====================================== ================== 3 23 98.6 38 CCTCCACATGTGTGGAGAATACT # Left flank : GTGAACTTTGATTTGTGGTTTTTTCTTTTGCACTTTGCAATTGGGCTTTCGGCATATTTGTCACCTCTTAGCTCCGATTCTCTTAGCCTCCTTTCACTATATACAACACACGCTTTTACGTGTAACGCGAATGATATTTAGAAAAATATGCCAAAAAGGCATCAATCTGGCCGTCTAAAGCCAAATGATGCTTTAATTGTTTTTTCACCAAAATCAATAGCCTAACTTAATGACACTGTTTTTACATAAACTTATTAAATTTATAATTCTTCATATTTTTTGCTCTTTAACTAATTTGTTATCAAAATTGAATACAACGATTAGTAGCTAAGTCCTTCTTACGATTACCAGATTACCAATTCATCTCGATTCTATTTTAGATTTCTTAGCATCTTTTCACTATATAAGTGAACGCAATCTCCGTGCACCATCAACAATATTTTTAAATAATATACAAAAACAGTCACTCTATAGAACATATTTTCAGAGCAGCTATTTAG # Right flank : CTAAATGAATCCCGCTACAGCAACAATCCCTACCTAAAATCATAGCATTTTTTATTGCTTTTAACACAAAGTGTTTCTTTAATATCTATCGATATAAAAAAGAACCTACACAAAGTGCTTGCAAATTATTTCAGCCTGGTCATTCATTAAATTATATTGTCTTTTACTAAAGAAATCAGGGAGTTAGCATATATAGGCATAGAATTAGATGATTCTGATTTTGCAAGAAATTTTTTAATGATTTCATTTTGCCGACTAGCAATATTCAAAACGTTATATTTTTTATCAACAAAACGTCCTAATTGCATCTTTTTTACAAAGGATGGAAAATCATAAAATTGAGATAACCATAGATTAGTCACTTCATTTTTATAAGCTCTAGCAAGCGGCGTGTTTTCATTACCTTCAAAATAATTTTTTCCTGAATTGTCAAATTAAGTGCAACAGTTAGGCTATGAGGAAATATATTGCTTGAAGAGTTCTTCTGCTGTGTGATAT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCACATGTGTGGAGAATACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 3572-3785 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCW01000034.1 Lactobacillus crispatus DSM 20584 = JCM 1185 strain DSM 20584 Scaffold34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3572 29 100.0 32 ............................. AGTTGCCCTGATACCGAACGGGATCCGTACCG 3633 29 96.6 33 ............................C CCCCTAATATCATCTTTTTTAATTGAAAACCAA 3695 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 3756 29 86.2 0 .............A...........AA.A | C [3778] ========== ====== ====== ====== ============================= ================================= ================== 4 29 95.7 33 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTGGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACC # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATAATATGGCACGTGAACTAAAACAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTCGCTTTGAAAAAAATAGATAATGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //