Array 1 804397-813463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLDE010000001.1 Clostridium algidicarnis strain CM011 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 804397 29 100.0 36 ............................. AAACAATATAAATAAGCTAGGCGTTCAAGATTTAGA 804462 29 100.0 35 ............................. TTAACTAAATTAGATAGTAGTTGTCTTATGTCCGT 804526 29 100.0 36 ............................. TTTTATTGATAATGGTAATTGATTGAATTTAGATGG 804591 29 100.0 37 ............................. CCCAAATTCATCTCTGTGTAGAGAATTTAATCTTTCT 804657 29 100.0 35 ............................. TTGCAATTTTGGTATATTCATTCTCAAATTCATAC 804721 29 100.0 35 ............................. TGTGTTAACAAAGACGAAGAAAAAACAGGCATACC 804785 29 100.0 36 ............................. ATAGCAACTGTGTATTTACTAGTACTAGCATACATA 804850 29 100.0 35 ............................. TCTTTTAACTGAACTAACATATCTTTAAGTTTATC 804914 29 100.0 36 ............................. CTTTAAAATCCGAGTAATGAAAGTGTCTTATTTTAG 804979 29 100.0 36 ............................. CATGCTTATTGGAGGAGACACGGGTTCGGGCAAAAC 805044 29 100.0 37 ............................. GAGGTTATAGCAAAGGCTTCTATGGCAAGTTGGGTAG 805110 29 100.0 36 ............................. AAAAAGGAGGGAAACAATTATTGGAATTTTTTAATT 805175 29 100.0 35 ............................. AGATTATCAAAATTAGAGAAGGATAATGTAACTCC 805239 29 100.0 36 ............................. ATTATAAGCATTGCCCTCCTTCTATTATTAAATTTC 805304 29 100.0 37 ............................. CAGAACAGAGCATAGATGGGGATGGGATATTAAGTTC 805370 29 100.0 35 ............................. AAGATGGCAAATTAGCAAGTATTAGTGGTGTAAAT 805434 29 100.0 36 ............................. ATGATAGGCAGCAGGCTAGGAATTATAATATTGCAA 805499 29 100.0 35 ............................. AAAATTAAGATAGATATAAATGTTAGGGCCATATA 805563 29 100.0 37 ............................. GTCGTAAAAGATGCTGATTATACATTTAGTTTCACAT 805629 29 100.0 37 ............................. TCTTTCGTAATAACTAGAGGACTTATAGAACGGCCAG 805695 29 100.0 37 ............................. AGTGTATTCTCAAATTCAATTGTATTATGAGTATAGA 805761 29 100.0 35 ............................. TTAGCAGTAGTAATGTCTGTAATGCCATGTCCCAA 805825 29 100.0 37 ............................. AGAAAAGGAGGATAATAAAGTGGAAAAGTTAACATGG 805891 29 100.0 37 ............................. AGGAATAGTAGAAACTACAGTTAAGCAAGCTTGCCAG 805957 29 100.0 36 ............................. AAGGGCTAGTCCGAAAGGGGATTGTACAATGGAAAA 806022 29 100.0 35 ............................. CATTTTGACAAAACTTTAGGAGAATATGTAGGATT 806086 29 100.0 37 ............................. GTAGGAAATGCAACTTATATTAATAAAATTAATAATA 806152 29 100.0 35 ............................. AAATATGCTAATACTTCATATATATTTTTAAACAT 806216 29 100.0 34 ............................. GAATTACACATTTCTATCCCTATACTATTTGCAT 806279 29 100.0 36 ............................. TATATATTCTAATCACTGATTAATTAATAATCACTA 806344 29 100.0 36 ............................. GCCTTTAGCAATTAAAGCATTCCATGCCACATCACT 806409 29 100.0 36 ............................. CTCACAGAAGTAGGATATTTTAAATCTACAGTAGGA 806474 29 100.0 35 ............................. AACTACCTGTAATATTTGTGCAGTTACCTAAACTT 806538 29 100.0 36 ............................. AATACAGACGAATGTAGTCTTTATAAAGATTGGGAA 806603 29 100.0 36 ............................. TGGCTCATGTGGGAGTTTTTTTTTGCTTTATTTCTT 806668 29 100.0 36 ............................. GATAATGTTTGTGACTTAAAAACAGCTAATTATGAA 806733 29 100.0 36 ............................. ATATAAATGATAAATCAAAGTTTGTTACTTTGACTT 806798 29 100.0 36 ............................. TGCGTTAAAGTTTAAATTTTTAAATTTTACTTTACA 806863 29 100.0 36 ............................. ATTACATTTAAAGGTTTAACAAGTGTTGGTTCTAAC 806928 29 100.0 36 ............................. AAACAAAAGCTATACGCATAGTAAAACTATAGATTT 806993 29 100.0 36 ............................. ATAGTTTTTACAATACTTTCCATCGGAGCAACCTCA 807058 29 100.0 36 ............................. TTTGAAGATTTTATTACTCTTACATTAGACAAAGAA 807123 29 100.0 36 ............................. GTTAAAAAAGTAAATGCAGTTGAAACTGAAATTTTA 807188 29 100.0 36 ............................. TCTAAAAACAACTCATCTTTCTTTGATTGTAGTAAA 807253 29 100.0 37 ............................. TTGAGCTTTCTAAACCATGATATTCTCAATTGCAAAT 807319 29 100.0 36 ............................. CAGTAGAGGATAGAGTGAATAACCGTGTAGGAGTAA 807384 29 100.0 36 ............................. TAGAAAAAGGGTGGAAGTTATTTGAAGATAAAGTTA 807449 29 100.0 36 ............................. TATACTCTAAAAAGCTATTAAACCTACCGTCTATAA 807514 29 100.0 36 ............................. TTCTGATAGAAAGATTGTAAACAATTTAGAAATAGG 807579 29 100.0 36 ............................. CTACTCTTTTAATTAATTTATCCCCAATTATTTCAT 807644 29 100.0 36 ............................. TAGGAGAATTGGAAGGTAATAAAATAGAAGTTTTAA 807709 29 100.0 35 ............................. CTAAAGGTGGATAATACAAGGATGAAGCATAGTGT 807773 29 100.0 35 ............................. TTACTTTTTTATCAAATCCTAGTGAGTTATATTTA 807837 29 100.0 35 ............................. AAGTAACTCATATCTTGTATGCCTGTGCAAAAACT 807901 29 100.0 37 ............................. GCACAAATTAAGCCTGTAATGTAGTCTAAAACCATTA 807967 29 100.0 35 ............................. TAAATAAGTTAAAAGGTGGAATAAGCTATGTTAAA 808031 29 100.0 34 ............................. CAACGAAAGTTTACAGAATTAGAAAGGGAATTAG 808094 29 100.0 37 ............................. TAAGACAAGACTCACCCTTAAAAGTCTAAAAATGATT 808160 29 100.0 35 ............................. TATAGAAAAGAACATGGTTTATTAATCTTACTCTA 808224 29 100.0 37 ............................. TTCTATTAGGAAGTTATGTTCACAGTTGGAGTTCTGG 808290 29 100.0 35 ............................. CGTTGTCGGACGTAGAGAACAATAAAACTAATCCA 808354 29 100.0 36 ............................. GTTAACATTTAACTTCTTGGCTATATCTGTTATCTG 808419 29 100.0 36 ............................. ACGTAAAAAAAAGTGTAAATTGGAAGAAAGATTTTA 808484 29 100.0 37 ............................. GGTATAGCTTTTATATCGTCCCAAATCCCCCTTAAAG 808550 29 100.0 35 ............................. ATGAAAAAATAGAGGTAAATATAAATAGTGGTGGC 808614 29 100.0 36 ............................. AAATTTATAGGTTTAACAAGTGGTGTACTAGGATTC 808679 29 100.0 36 ............................. CTATTATTGCAACGTGGTAGAGAAAAACTTGCAGAA 808744 29 100.0 36 ............................. TAATATATTAATGAATAATATAAAAGATAGCATAAT 808809 29 100.0 38 ............................. ATAGATAAATAAAAATAATAAAAAGAAAGAAGGAATTA 808876 29 100.0 35 ............................. AGATAGGCGAAAATAATCCAATGTGGAAAAAAGAA 808940 29 100.0 37 ............................. TTAATAATATTGGGAGGCTGCTTTTTAATCCTCTTTT 809006 29 100.0 35 ............................. TTTAGATATAACAAGTTTAGCTCCATCGACTATAC 809070 29 100.0 37 ............................. ATAGTTTAGGAGGAGAATTATGTTCGATATAAGTACA 809136 29 100.0 37 ............................. GAAGTTGGAGAAGGAGATAACATAATTGATGGTAAGC 809202 29 100.0 36 ............................. GTGCCTAAAGAACTACAAAATGGATACATCTCTTTA 809267 29 100.0 36 ............................. GCAAGCTCTTGTCCCCATTATACAACGTGCATAAGC 809332 29 100.0 35 ............................. AAATTCTTATTAACATAAGTATAACACAACATATT 809396 29 100.0 36 ............................. TTACAAAAAAACAGAGAAGATATAATTAAAGGATGG 809461 29 100.0 36 ............................. ACTTGCGGATAATTCTCCAACTGTTACTTTTCCTTT 809526 29 100.0 36 ............................. AGATTTACGCTTAGAACATCATATCCTAGAAGAAAA 809591 29 100.0 36 ............................. TTCATTTACTAGGCATAAACAGTAAATTTTAGCTAA 809656 29 100.0 37 ............................. TTGTTAATGCTACTGGTGTAAAAGCTAATGATGCTAC 809722 29 100.0 37 ............................. AACTCTATAAGAGGGTGTTGCAATGGCTCATGCAAGC 809788 29 100.0 35 ............................. ATGATAGAACAATAGGAGGGAATAAAATGTTAGAA 809852 29 100.0 35 ............................. TGCTTTAAATCCTGCAAGGTCAGGGGTGGTTAGTT 809916 29 100.0 36 ............................. ACACCAAAATATGGTGACCAACTATTCAGAATTAAA 809981 29 100.0 37 ............................. AAGCTTCAACAATCTCTTTGTTTTCTTTTATCAATTT 810047 29 100.0 37 ............................. TAAAAAGCTAGTATCCAGAGGGTGGACAAGTAGAAAA 810113 29 100.0 36 ............................. ACTGTAATCTACCCCCATGTTAGTGTACACTTCTAG 810178 29 100.0 36 ............................. TTGAGGGAAATGAGCATATTCGCGAAGATACTTTTA 810243 29 100.0 37 ............................. TTTCTATATCTGTATCATAATATTTAAAAACAATTTT 810309 29 100.0 36 ............................. GAAGAGGCTGATAAGATGTTTGGAGCAGGTGCAAAC 810374 29 100.0 35 ............................. AAATGAAATAATGAAGCATTGTACTGATAAAAAAG 810438 29 100.0 37 ............................. GAAAAATATATAGATAGTAAACATATAGGTAGTTATC 810504 29 100.0 36 ............................. CCCATTAATAATTGTTCACTATTTAATAACATTTGT 810569 29 100.0 37 ............................. TTGGGAAAAGTAGGAAGAGAAACAATTGAAGAAATAA 810635 29 100.0 36 ............................. AGGTAGTACAAAAACTGATGACAGGCAAAATGCTTT 810700 29 100.0 36 ............................. TTATTACTGATAATTGGTACGCTTGCGGGTTCAATT 810765 29 100.0 36 ............................. TATATTTTATTGTATCATTATCTAATTATTTAAGTA 810830 29 100.0 36 ............................. AAGCTCCTCCTCTTGTATATTGTTCTTAATTAAAAA 810895 29 100.0 35 ............................. TTTGCAAACTTTCTATTTCTAAATCTTTTTTATCT 810959 29 100.0 35 ............................. GTTAAAAAAGTAACCATAAAAAATATACAAAAAAC 811023 29 100.0 36 ............................. TCATCTTTTAATTCGTCACCAAATTCTAAGACCTCT 811088 29 100.0 36 ............................. ATACCTATAGTAGATAGGCCCCCACCCGCCCAATCC 811153 29 100.0 36 ............................. ACAATCTTCATATTGGCTTTTAACACTTGTGCCGAA 811218 29 100.0 36 ............................. CAATTCAAAAAATATTACAAAGGAGTAATGGGAATA 811283 29 100.0 36 ............................. CTCTATAAATCTTCGGCATTCTTCATTCAGCATCAA 811348 29 100.0 37 ............................. CTCTATAAATCTTCGGCATTCTTCATTCAGCATCAAC 811414 29 100.0 36 ............................. TGTAAAACTTTCGTTAGGATATTCTATTAATGGCTC 811479 29 100.0 36 ............................. ATTTTATAAATTATTTGTATCAATTAACCTTTCAGC 811544 29 100.0 35 ............................. TTTTCTAAAGAATTGGTATTAAGGCATTTATCAAT 811608 29 100.0 37 ............................. TAAACAACTAAGGACTTGTGGTGCAGCTCGGGAGTGG 811674 29 100.0 37 ............................. ATTATTATTTGTCTTATGCTTATCATTATGCGAGTGA 811740 29 100.0 37 ............................. TTAGTATAATTTCAGAAGACGGTGACGTTGTTTTTGA 811806 29 100.0 35 ............................. TTTAACCACTTTACAAGTTTGTCACTCACATTCTC 811870 29 100.0 36 ............................. TTAGGCAATCCCATATGAGGACTTTTTAATAAAATT 811935 29 100.0 37 ............................. TTATTAAGTCGGTGTATGTGCTCAAATTATCATTGTA 812001 29 100.0 36 ............................. CTAAAACAATTTTGCAACGTAGTACCAGTAGGTACT 812066 29 100.0 37 ............................. TCGTAACTATGTCGCCTAAGTCAAAATCAATTTTATA 812132 29 100.0 37 ............................. TGCAAGTCCGCTAAACTACCTGTAATATTTGTGCAAT 812198 29 100.0 37 ............................. AAATTAAAATGGTAAATAATATTAACAACTTAATAAT 812264 29 100.0 36 ............................. CTTACAAAATCTTTTACCTTGGAATAAGCAGTTTTT 812329 29 100.0 36 ............................. AAATATTTAGCAGGTGTAAAGGAAATAGGAATAAAA 812394 29 100.0 36 ............................. ATCGCTCTTGTTGCAATTGCTGGTGGTGTTATCTTT 812459 29 100.0 35 ............................. TTAACCTATAATTACTTAATTAGTGTACTAACTAC 812523 29 100.0 35 ............................. AATATATAGATTTTGCTGATGTTAAAGCAATCTAT 812587 29 100.0 36 ............................. TTATTCTTTGAATACATATTATTACGGTTATACTTC 812652 29 100.0 36 ............................. TCTAATTTGACAATTACTATTAATCCTCCTGCTGGT 812717 29 100.0 35 ............................. TTGATACTAAATAACACAGTAAAAACATACAGGAT 812781 29 100.0 35 ............................. GATTTAAGAGGACAGTTTATAAGAGGTTTCGACAA 812845 29 100.0 37 ............................. AGAACCTTTTAACCTATATACTTATATCAACAAATTC 812911 29 100.0 37 ............................. TTGGATAATTTGCAATTTACAACTAAATTTGATAGTA 812977 29 100.0 36 ............................. CAAGGATATTATATTATGTTTAATGTTGGTAATTTG 813042 29 100.0 37 ............................. CTTGCATTATTCCGTCTGTTGCATTTTCTAAAGATGT 813108 29 100.0 37 ............................. TTGTAGATTATATTTTCTCTTTGCAATAGGGTTAAAT 813174 29 100.0 36 ............................. AAAGAATTAATAAAACAAAAAACAAACGCAGAAAAA 813239 29 100.0 37 ............................. CCCTAAACCACTTGCTTTACTTAGTTTAGTTAATTCA 813305 29 100.0 36 ............................. TCTGTTTCACCTTATTTAGCTTCAAAAGGTGTTCCT 813370 29 100.0 35 ............................. ACAACTATGGTTATACTAGGTAATGGAAATGATAC 813434 28 79.3 0 ............G...-......T.T.GT | C,A [813443,813454] ========== ====== ====== ====== ============================= ====================================== ================== 140 29 99.9 36 GTTTTATATTAACTATGTGAGATGTAAAG # Left flank : AAGTGTTTTAAATGATTAAAATTAATGATATAATGGTGGTGATATTTTGTTTGTGATTTTAACTTATGATATTGAGGAAAAGAGGATAAATAGAGTTAGAAAAACACTTAAGAAATATTTAACATGGACACAAAATTCAGTGTTTGAAGGTGAGATAACAGAGGGAAAGCTCCACAAATGTTTATCAGAGATTAATAAACTTATAGATAAAAAAGCAGACTCTATATATGTATACAGGGTAAAAATATCTAAAAATATTAGAAAAGATGTTATTGGAATAGAAAAAAGTTTTGATGAACTTTTTTTATGACTAAAACTGCATCGATGCAAACAAAGGTTCTAGGTGCGACAACACGTTGATTTTACTGTATTAGAATAGAAGTTTCTATAAAATAACAAAACATTATTCTAGGTTCACTGCAAAATTGTCTATTTAAGCACTATCAATGGTAGCGCCTAGGCCAGTAATACCAGTATGTTAATTAATTGTGATCTTTGGG # Right flank : TACATTAATCTATGAAGAGACCTTTGGTAAAAGCTATAAAGAACTTAAAGCTGATTGAATTAAATACCTTAAAGATAATATTAAATATATAGAATTGATACTCTGATACAAAACATTATTATGAAGAACTATAATTTGTTTTTTTATTGCTCCCTTTTTTTATGATCTGAACATTCCCTCCATCTTTTAAGAGGTGGAGATTATTTTTTATAAGAAAGTTTACTATTATTAATAGATATTCTAACCTTATTAAGGTAAGGTGAAACCCAAAATATTATTATTATGATATAGTTAATTAAGAACACTACATAAAGAAAAGAGGAAAAATCATGTCAGAATGTATATTTTGTAATTACAATAAATCAGAGATAATAGCAGAAAACAAATACACCTTTGCTATCTTAGATCACTTCCCAGTAAATGAAGGTCATTGTTTAATCATACCTAAGAGACATTTTATGAACTTTTTTGAGGCAAGTGAAGAAGAGGTTAAAGCCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //