Array 1 683707-684926 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAENCE010000001.1 Staphylococcus pseudintermedius strain HSP095 contig_1_segment0, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    683707	    36	 100.0	    29	....................................	ACGATATGTTATATTAAATTTAAAGGGGT  	
    683772	    36	 100.0	    30	....................................	AGAATACGCCGTCGTCTTACCGCTTGCAGT 	
    683838	    36	 100.0	    29	....................................	ATATCTTAAAAGAACCGTCCAATACTGAT  	
    683903	    36	 100.0	    29	....................................	GATTATTATCCAACAATGTTTTATAAGCG  	
    683968	    36	 100.0	    31	....................................	ACAAAGGTCCTTGGACTGGTCACCCACAAGC	
    684035	    36	 100.0	    30	....................................	TACAGATAATGAAGCGTCTGACGAATAGTT 	
    684101	    36	 100.0	    30	....................................	AATCGATAAAAGGAGTGTCAGATATAGTTA 	
    684167	    36	 100.0	    30	....................................	TGAGTAGATATAAAAACTACTGGAGCATTG 	
    684233	    36	 100.0	    30	....................................	GTTTGTTTGAGTATTATTCCCCCAATTTTC 	
    684299	    36	 100.0	    29	....................................	CTTTCTAAAAAACGTTGATACGCTTCTTT  	
    684364	    36	 100.0	    29	....................................	AGCAAAACGGTTCAAACGTTGGGTAACGT  	
    684429	    36	 100.0	    29	....................................	AATAAAAAAGGGGAATAAAGCAGTTATAT  	
    684494	    36	  97.2	    30	.............................A......	TGCCTTGATGATTGCTGAGCCTGGTGCTGC 	
    684560	    36	  97.2	    31	............................A.......	AAAATATTTAGCGGAATCTTTACAGGTCAAT	
    684627	    36	  97.2	    29	............................A.......	TTTAACGCCGCTCCTATGACGAGCGTGAA  	
    684692	    36	  97.2	    29	............................A.......	CTCGTACAACTCTTTATTATTGTTCTGCT  	
    684757	    36	  97.2	    30	............................A.......	ATCTTTTTAAACGAGATATTAAACAGCAGG 	
    684823	    36	  97.2	    30	............................A.......	ATCGTATTGACAACTGTCTTAGCATTCAGT 	
    684889	    36	  88.9	     0	..........................C.C..C..C.	|                              	A,T [684912,684918]
==========	======	======	======	====================================	===============================	==================
        19	    36	  98.5	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                               	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGCGTGGTTGAAGCGGTCGGCGATGCGGTTACAGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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