Array 1 102203-101466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIIX010000005.1 Novispirillum itersonii strain DSM 11590 Ga0373309_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 102202 37 91.9 32 ......A........A.C................... TTCTTCGACCGTTTCTTCAACAACATTAACCT 102133 37 94.6 30 ...............A.C................... AAACATCCTATTTTTCTTTTTTCGCCCCAA 102066 37 94.6 32 ...............A.C................... TTCGCATTTATCCCAATAAGGAGCAAGAAACA 101997 37 100.0 34 ..................................... GGCTCACGGCGATGCCGTGAACATCCTCTTCGAA 101926 37 100.0 36 ..................................... GGACCGAAGAAGTCGAGAAGTGCGTGACCATGGGGC 101853 37 94.6 37 ...............A.C................... CCACTCCCAAGAACCTGAACTACTACGTCACCGACCT 101779 37 97.3 32 .................C................... AGGTGCTGAAGGTTCTTGCGGCTTACCGCAAT 101710 37 91.9 31 ......A........A.C................... TAACCGTCCTGAATAACCCCTGTTATCGGCC 101642 37 97.3 34 .........................G........... CAAGATCGGCGATTACCGGATGCACACGCTGTGT 101571 37 100.0 32 ..................................... AAGGCGCGCGACATTGTCGGCACGTCTTGGCA 101502 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 96.6 33 GTTTCAGTCCGCGTGGATAAGCGGCATGAGGGGAAAC # Left flank : CTGCTGTTTCAGTCCGCGTGAACAAGCGGCATGAGGGGAAACCTACCCCGTTGCAGGCCATTGCGCAAGGCTGATGTTTTTGGGGTGTTTCCACGGAGAGATAAGAACAAAGCAGAAACAAATTGCCCGGCGCAGGGGTATTTTTGCTGAAAAGGGGCCTGTTTTCAAGGGGTTGTTGAGTCTCCACTGGTCTCTGTTTCAGGAAAAACTCTCTATCATATTGATTTAAAATGATTTTCCCTGAACTGGCCGGTGGCGGGGATGGTGTGGGTCCGGCCCCTGTTTTCAGGCAGAAAAAGGGGAGGTCCGGAGGCTTCTGCCTCCGGGCGGGGCCGGGGCGGCAGTCCCGGAGGGCTCCGGCTGCGGGCTTTGTGGTGGGTGGGGCGGGGGAGTGTGGGGGGGCGGCTGATCTCTTCAGCCAAGGCTTCCCTCTGCGCGGGCGGGTGGCGTGAGGGAGGGCTTGCTTCTGCCCTCTCGACCTCGGCCAGCGCCGGGCAGGA # Right flank : CTACCCCGTTGCAGGCCATTGCGCAAGGCTGATGTTTTTGGGGTGTTTCCACGGAGTGATGAGAACAGAGCGGAAACAGATTGCCCGGCGCAGGGGTGCGGAGGGGTATTTTTGCTGAAAAGCGGTCTATTTTCAAGAGGTTGTTGATTTTTCACTGGTCTCTGTTTCAGGGAAAACTCTCTATCATGTTGATTTAAAATGATTTTCCCTGAACTGGCCGGTGGCGGGGATGGCGTGGGTGCGCCCCCTGTTTTCAGGCAGAAAAAGGGGAGGTCCGGAGGCTTCTGCCTCCGGGCGGGGCCGGGGCGGCAGCCCCGTGTCTGTCCCCCTCCCCACACTCCCCATTCTCCCCTCACCTCCGCTTGTGGGCTTCGCGGAGGATGCGCTTGTTGGTGATGGTGACGGTGCCGACCATCAGCAGGCGCAGATCGCGGACGATATAGGCGGCAAGGTCGGCATCGGAAATGTCGGGGCCGTCGAGATCCAGCCGGAAATCCTGC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCGCGTGGATAAGCGGCATGAGGGGAAAC # Alternate repeat : GTTTCAGTCCGCGTGAACAAGCGGCATGAGGGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 102661-103112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIIX010000005.1 Novispirillum itersonii strain DSM 11590 Ga0373309_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 102661 37 100.0 34 ..................................... AGCAGTCGATCGAACTCCAGCACCGGAGCCGTCG 102732 37 97.3 31 ....................C................ ACGGTGATTGCGGCGTTACGGTCCATGTTAT 102800 37 97.3 33 ..............................T...... CATGTAGAGCAGCTTGACGCGCTTGAAGTCGAT 102870 37 100.0 31 ..................................... CCAGCAGAGACTTCATGGCAGAAGTCAGGAC 102938 37 100.0 31 ..................................... TCCGCGGTCTTACCGCAGGCCTGAAGCTGTT 103006 37 100.0 33 ..................................... GAAGTAGTCCTGCAAGAATGTGGGTACCGATAA 103076 37 75.7 0 ...........C...A.CC.CC........GG...G. | ========== ====== ====== ====== ===================================== ================================== ================== 7 37 95.8 32 GTTTCCCCTCATGCCGCTTGTTCACGCGGACTGAAAC # Left flank : AAGAAGTTTCCCCTCATGCCGCTTGTTCACGCGGATTGAAACTCCTGCCCGGCGCTGGCCGAGGTCGAGAGGGCAGAAGCAAGCCCTCCCTCACGCCACCCGCCCGCGCAGAGGGAAGCCTTGGCTGAAGAGATCAGCCGCCCCCCCACACTCCCCCGCCCCACCCACCACAAAGCCCGCAGCCGGAGCCCTCCGGGACTGCCGCCCCGGCCCCGCCCGGAGGCAGAAGCCTCCGGACCTCCCCTTTTTCTGCCTGAAAACAGGGGCCGGACCCACACCATCCCCGCCACCGGCCAGTTCAGGGAAAATCATTTTAAATCAATATGATAGAGAGTTTTTCCTGAAACAGAGACCAGTGGAGACTCAACAACCCCTTGAAAACAGGCCCCTTTTCAGCAAAAATACCCCTGCGCCGGGCAATTTGTTTCTGCTTTGTTCTTATCTCTCCGTGGAAACACCCCAAAAACATCAGCCTTGCGCAATGGCCTGCAACGGGGTAG # Right flank : CCTTGGCTGAAGGGTTCAGCCTGTTCCCGCACTCTGCCACCGCACAGTCCGCCGCCGGAGCCGTCCGGGGCGTGAGGCGTTCGCGGGCGGCCCCGGCCCCGCACACGCCGGGCTTGCCATCCCGGCGGATCGGCGCGATGATCAGCAGGCTTCAGGGCAGGTCGTCCACCCGACCCTCCACTCCCTGTAGCAGAAACCCGCCCGGTGGATTGGGCGGGTTTATTTTTGGCCGGGATCTGGAGGGCCGGGATCTGGGGGCGGCACACATCCCCCCTGCGGGCATCATCTTATTTTCGGATTATTTTCGGAAAACAAAGGGGGTTTGGGGCATCGCCCCAAGCGGGTGCGGGCGGCAGCCCGAGGAAAACAGTTGGGTACGGGCGGCAAGCCCGGTGAAAAAAGCTCGCCCCCGCAGCTTTCCCCGGCCTTCCCCCCGCCGCCGTCAGCCGCCGGTCACGCTCATGTGGCGGGCCACCGCCGGGCGGTGCAGTCGGTCTTCG # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCTCATGCCGCTTGTTCACGCGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 3 118069-117558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIIX010000005.1 Novispirillum itersonii strain DSM 11590 Ga0373309_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 118068 33 100.0 35 ................................. CTCGAACCGCCGTGCCACCGCGTGCCAACGCTTGA 118000 33 100.0 34 ................................. ACGGCCACCGTCGAGGAGTGTGACACCGGGGCCG 117933 33 100.0 37 ................................. GCCGGCCTGTACCATGAGCTGGGTGGCAATCTCGCTG 117863 33 100.0 34 ................................. TTCCCCGCCGCCGTTGCCAGCGGTCTCGTCGCGC 117796 33 100.0 36 ................................. ATTTCCCCAACTCTTCAACAAGGAAGCTCATCGCCG 117727 33 100.0 35 ................................. CGGGCGGCGGCGCGCCGGAGGATCCCACCGCAGGC 117659 33 100.0 36 ................................. TGCGGTCCCCGGTGCCGTTTGGCGAGGACCCGGCCC 117590 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 100.0 35 GTCGCTCCCTCACGGGGGAGCGTGGATTGAAAC # Left flank : TGTCCCCGCTGTGGAAAGTCGGCAGCGTGCTGGTCGCCGCCGGTCTCGGGTACGCCCTGCCGGTGATGGGGGTCAGCCTGCTGGCCTTCCTGCTGGTCGATGTCGTCCGCTGGCAGATCGCCAGCCGCGCCCGCGCCCGCCGCGCCGAAGCCCGCGCGGCGGCGGAGTAAGGCCGGGGACGGGGCAGGGGACCGTCCTTTGGACGGTGGGACCCAAGCCTTTTTCGGGAAAAAGGCTTGACCCAAAAAGCCTGCTGATCTGAGTCTGGTTACAGATCCCCCGGATCCGGCCTGCTGTGCCGGGCCGGGGGATTTCTGTTTCCACCGCGAACCGCAAGCGGGTGCTGCGACTCCGGGGGGTTCGCGGTGACGGAAGAGGTTGAATTTGCAGGATAAATAGTTCCGACTGTGGAACGATGACGCGGAATGTCAGGAGGGATTTGCCGGTTCGCGGTAGAGGGTGTATTTTGGCTTGTGGGTCAAGGCTGTGCCCGGTACCCG # Right flank : AGCCGGCATGAGGGGCACGGCAACCGCGCCCCGGCCCCCCTCGACGGGGTCCGGGAGGCCGCGCCTCCCGGCGGGGGCGGGCAGCGCCCGCATCATCCAGCGCCCGCCATCATCCAGCGCCGTCATCCTGCCGCCCGCATCCTTCCGCATCCCGCATCCCCCGCTACCCTCTACCAGTATTCCTCCGACCGGCGGTGATCGGCGAAGCGGTCGGTGAGGAAGTCGAGGAAGGCGGTGACTTTGGCCGAGGTCTGAAGGCGCGGCAGGGTCTGGGCGTAGATGTCGGTATCGACGCCGCACCAGTCCGGCAGCACCCGCACCAGCCGCCCGGCGCGCAGGTCGCGGGCGATATCCCACTGGGAGCGCAGGATGATTCCGTGTCCGGCAAGTGCCCAGTCCACCGCCACTTCGCCGTGGTTGCTGGCCAGCGCACCGCTGACCTTGACGGTGACGCGGCGGTCACCGCAGACCAGCGGCCAGCTGTTGTAGGCCCCGAAGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 143786-142758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIIX010000005.1 Novispirillum itersonii strain DSM 11590 Ga0373309_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 143785 31 100.0 36 ............................... GACGGCGTTGTCGAGGGCCAGCCCAGTCAGCAGGAC 143718 31 100.0 34 ............................... TTTCCCGCGTGATCCGTAAAACGCCTGTCGATAC 143653 31 100.0 36 ............................... GCCGGAATGGTACCGGCGGCTCGCTGAAATCACCAC 143586 31 100.0 35 ............................... AGTAACCTGCCGCACATGCTTGAAGAGTGCTTGAG 143520 31 100.0 35 ............................... CTGTCCGCTGGCTAGGTGGATTGTACCGCAGGCGG 143454 31 100.0 35 ............................... CGTTCTTTGTCCTCGTATTCGATTTCCAGCGTCAC 143388 31 100.0 36 ............................... GTGGCGGTAAACGAAATAGATGTTGTCGGCGTCCTG 143321 31 100.0 35 ............................... ACCTGCTATTACGAGGCCGGTTCGTCGATCCGAAG 143255 31 100.0 34 ............................... GCCGTATCGGTATCGGCGATACGCACCGCGTCCT 143190 31 100.0 36 ............................... TTCCGCAGAAACGGAATTGATGGTTCCGCTCAAAGA 143123 31 100.0 35 ............................... GGAGTGACCGTGAGCCTGTCCGATCCCGCCAAAAT 143057 31 100.0 36 ............................... AGGGTCTTGGCTCATCATGCCCTCATCAGTCAGCCC 142990 31 96.8 36 ...........G................... AAGGCTCATATAGTCGGTATAGACGTCGGGCACAAT T [142981] 142922 31 96.8 35 ...........G................... TGACGCGATGTTTGTTGCGATGCGAGACGGCAAGG T [142913] 142855 31 96.8 35 ...........G................... TCCGTGGGGCCTTTCCTCCAGATCGGAGTCCCGTC T [142846] 142788 31 74.2 0 .....................A..ACCGTCT | ========== ====== ====== ====== =============================== ==================================== ================== 16 31 97.8 35 GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Left flank : ACGCCGACCGCCTCGGCTCCACTCCGGCCAAGGCGCTGCTCGACCGGGTGAAGATTGGCCGCGCCCCCGGCAGCACCGGCCCGGCCCGCAGCTTTGACGATTACGTGGTGACGTGGAACCGCGACGGCCTGCCCGCCGGGGTGGAGGCGATTGACCGCTTCTGATCCGGGGGCGGGGCGGGGCGGCGGAACCGTCCTGCGGACGGTGGGGAAGCAAGCCTTTTTCGGGAAAAAGGCTTGACCCAAAAAGCCCGTTTCTGTGATTGGGTGTCAGGAAACCCCGGTTCCGGCGTACTGCGCCGGGCCGGGGTTTTTCTGTCTTCACCGCGAACCGCAAGCAGGCGCTGCGACTCCGGGGGGTTCGCGGTGGCGTAAGAGGTTGAGGGGATTGGATAAATATTTCCGGATGCGGAATAATGACGCCGTTTGGCAGCAGGGATTTGGAGGTTCGCGGTAGAGGGTGTATTTTGAGTGCCGGGTCAAGGCATTGCCAGACACCCA # Right flank : TTGCGACCCTCCCACTTTCCCCAAGGCTTTTTGGCGCTCCCTTTTTCTCGAAAAAGGGGGCATCTCACCGCCCACCGGGCGGTTCTTGCGCCGGATCTGGTTTCCCGCCATGCTGCGGGCCGTTTTCCCGCAAGGAGGCCCCGCCATGCCGCAGACTGCCCCGGATTTTGCCCTGCGTCCGGAAGATCCGTCGGATCTGGAAAGTCTGCGCGGCCTGTACATCGTCAGCCGCTGGCAGGAGATGGCGGAGGCCGGATTGCCGGAGGCGGAGCGGCCGGAGTTCCTGACGTGGCAGTTCTTCCAGCAGCGGGACCATTTCGCCGCCACCGGGGCGGAGGTCTGGGTGATCACCGTGGAGGGGGCAGTGGCCGGGCGGCTGGTGGTGCAGGAGCAGCCGGGGGTTCTGGCGCTGCTGGGTCTGGCGGTTCTGCCGCCGTGGCAGGGCGGCGGGCTGGAAGGCGCGGTGCGGGCGCTGGCGGCGCAGCGGGCGCAGGAAGATG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //