Array 1 43221-46483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWNS010000019.1 Ralstonia solanacearum strain PD 511 IPO4106-NAK_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43221 29 100.0 32 ............................. TGCTCGAGGAGTACGCGCCGGCAGCGCAGGGG 43282 29 100.0 32 ............................. CCTTCGCCGTCCCATACGTCGATCGCGAGCGT 43343 29 96.6 32 .........A................... GCCTCGACCGACTCCGTTGATGTAGTAAGGGT 43404 29 100.0 32 ............................. CCGCTCCGTTTCGGTACTGGCCCTGTGCCAGA 43465 29 100.0 32 ............................. GCCGCGCCATGTAGTCGCGTCGTGACAGGTGC 43526 29 100.0 32 ............................. ACGATGTCGCAGAACTTAAAGGTGAAAACGAA 43587 29 100.0 32 ............................. ATGCCGTTTGCGATCTCGGACGCACCCCAGCC 43648 29 100.0 32 ............................. CCTTGCCAGCCGCGCGCCAAGCATTTCGCAAT 43709 29 100.0 32 ............................. CTGCGGCGGCTGGTGATGAAATGCTCAAACTG 43770 29 100.0 32 ............................. GGGAATTCTTCACAACAATTCATGAGTTTAAT 43831 29 100.0 32 ............................. CGGATTTTGACCGTCTGCTGCGCATTCAAAAG 43892 29 100.0 32 ............................. TAACTGTAGGCCCGACGATCCTCACCAAAATG 43953 29 100.0 32 ............................. CCTGTTTCGGATGCGTTTCTTGTGCTGATTAT 44014 29 100.0 32 ............................. GCACCGATCCGGTCGTCCGATCCGGAGGCGAT 44075 29 100.0 32 ............................. TCGCGGCGTGGGCCAAACTCTGCATGATTGCC 44136 29 96.6 32 ............................A TCAAGCCGCAGCAGAATGACGCGCTGTCCGCC 44197 29 100.0 32 ............................. CGATTGGACAATGGAGGAATTGATTTCACGGT 44258 29 96.6 32 ............................C GCGGTCCCACCGATCGTCAGTTTATCTCCGAA 44319 29 100.0 32 ............................. CTCGGGCTGGTCAAACGCTGCCTGATCCTGTG 44380 29 100.0 32 ............................. AAATGCAATGGCAACAATAAAACCGGTAAACA 44441 29 100.0 32 ............................. GGTTTCCACCGCTTGTTTTTACAGCGCAAGCA 44502 29 100.0 32 ............................. GAGCAGGTCGATATGGACGGCGAAACAATCAT 44563 29 100.0 33 ............................. CGCTCCCGGGCAACATTCATGGATTCGTGCTCC 44625 29 100.0 32 ............................. CCGCCGCTGAAACCGTGACAGAAGAAATCAAA 44686 29 100.0 32 ............................. ATCATCTGGAACCCACGTCACCCAAGCGGTAT 44747 29 100.0 32 ............................. TCATGCATAACCTCTCGGTTACGAATGCGAGC 44808 29 100.0 32 ............................. TCTTCGTCCTTCACTTCCGGCGCGACGAAATC 44869 29 100.0 32 ............................. GCGTGGCAGTCAGAGCCCTGGGCAAGCCCACC 44930 29 100.0 32 ............................. GGCGACAATTACATCGCCGCTTTCGTACATGG 44991 29 96.6 32 ............................C TCGCGGTAGACGCAGATGGCGTCGCCGCGGAC 45052 29 100.0 32 ............................. ACATGGCGTGCATTTTCGAATACGCATGGGCA 45113 29 100.0 32 ............................. GGTATCTATCAGATCCTTCTTATGACAATCGC 45174 29 100.0 32 ............................. CAGCAGGGCGGTCGAGTCCTTCCCGCCCGAGA 45235 29 100.0 32 ............................. CATCCAACCACGAAACAGGCGCGCGTGATCCG 45296 29 100.0 32 ............................. TTTCGGCAGGCCCGACGATCCTCACCAAGATG 45357 29 100.0 32 ............................. GCCGCCTGCAGGCGCGCGTAATCGCGGACGGG 45418 29 100.0 32 ............................. CGCTACAAAGCCGTGCAACCAGTGCCACGCTG 45479 29 100.0 32 ............................. TTGCCGCCATCCGCCACCACGCGCCAGCGCCC 45540 29 100.0 32 ............................. GTGGACGGCTGCGAAGTGGACACCAAGCGCGC 45601 29 100.0 32 ............................. GCTTTGCGCGCAGCATCGCTAAATTCGGTTAC 45662 29 96.6 32 ............................C TGATCGCCGCCGCGCCTGAGCTGCTGGACGCC 45723 29 100.0 32 ............................. CAGGTACAGAAGCTCTGGCGCCGTTGCGATCA 45784 29 100.0 32 ............................. CCCACCAATCACGATTACCAGCCCTGCTTTTT 45845 29 100.0 32 ............................. ACTCACTAGGCAACCACGGCGTTTCCATGACC 45906 29 100.0 32 ............................. ACAATCTACATCCCGAACGCTGCAACAAACGC 45967 29 100.0 32 ............................. ACAGCTTCAGCAATTCTCTGGCCGACGCCATC 46028 29 100.0 32 ............................. AACTCGGCCGCCTGCTCTGCGTCCGACGGCGC 46089 29 100.0 32 ............................. ACCGGGGAATTTTTGCGGCTGCTGCGCCAGCG 46150 29 96.6 32 ............................C GAGCGCATCACCATGCAGGTGCGCGTGGCGAT 46211 29 100.0 32 ............................. CTTCACCAGCATGTCGACGTGGGCTTTCGGGA 46272 29 100.0 32 ............................. CCGTGAAGAGATTTTGGCGTCATTTGACGCCA 46333 29 100.0 32 ............................. GCCAATACCGAAACGGAGCGGCCTAATGTCCA 46394 29 100.0 32 ............................. AAAGTCCAGCAATTGTTCAGTGCAATTGTCGC 46455 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.6 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGTATTCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAAACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCTGCATCAACAGCTCACCGCTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACGGATTAATGCCTTCCACTATCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTAGCAGTCAGCTTTATCACCTTCTTGTCTTTCATGCCTTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55906-59537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWNS010000019.1 Ralstonia solanacearum strain PD 511 IPO4106-NAK_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55906 29 100.0 32 ............................. CCACTTGACACGCTGAGTGCGATGCCTGCGAG 55967 29 100.0 32 ............................. GTTGAAATCGCGCGCGCCTTCGGTCGGCTCAC 56028 29 100.0 32 ............................. CGCTGTAGCAGACGCAAACCCTCATCACCGAG 56089 29 100.0 32 ............................. GCTTGGCATGGCGCGTGACCGCGTGTTTGAGC 56150 29 100.0 32 ............................. GCAAAGAAATGACCAAGGAGCAGCGTCGGGCA 56211 29 100.0 32 ............................. ATTTTGGAGCGAAAGGTGATGGCATTACCGAT 56272 29 100.0 32 ............................. ATCCGTCCCACCGTCTGGCTGATCAATGGCAT 56333 29 100.0 32 ............................. GGGACTGACATGTGCATGACGATCGAACAGGC 56394 29 100.0 32 ............................. CTGACGCGAATAGAGCCAGCCGTCAAGGCTAC 56455 29 100.0 32 ............................. TGGTGTCCGAAAATATACAGATGAGAAAATAG 56516 29 100.0 32 ............................. CGAACCGCGTCATCCAAACAGGACGTTGCGAC 56577 29 100.0 32 ............................. AAATGCAATGGCGATGATAAAACCGGTAAACA 56638 29 100.0 32 ............................. ATAGTTCTGGTACACCGTCACAGTGGCCGACG 56699 29 100.0 32 ............................. AAATCCGTAGACGTAACGTGGGTCTTCGTGCC 56760 29 100.0 32 ............................. TTTTTCAATCGGCTGTTTTGTACCTGCCGGCC 56821 29 100.0 32 ............................. CGCAGCTTGGCAATCGGCCCCGGCTTGCGAAG 56882 29 100.0 32 ............................. ACGATGGAGCGTCCGGCGGCGGCGATGGCGAA 56943 29 100.0 32 ............................. GCGTCAATCGGCGTGCCGTTATCGGTCGGTCC 57004 29 100.0 32 ............................. CGACGGCGAACTCACGGGTGTTGTCGTCGGTG 57065 29 100.0 32 ............................. GTCGTTCAAAACGCATTCCTGCCATAACGCTC 57126 29 100.0 32 ............................. CCGTCTGTAGCAGGTTGCATGTGCGATTCCGG 57187 29 96.6 32 ............................T GCTCCTTTTGAATGCGCAGCAGACGGTCAAAA 57248 29 100.0 33 ............................. CCGCCATTCATCCATCCCGGTCGGCGCAATTGC 57310 29 100.0 32 ............................. ACCCTTAGTGCCTCCTCCATATTAACAGCCAC 57371 29 100.0 32 ............................. TCACAATCAACCCGAATCCGTCTCCGGCATCG 57432 29 100.0 32 ............................. GCAAGAAACCATCGCAGCAAACAGCCGAATCC 57493 29 100.0 32 ............................. AAATCAAATACGATGTTGCAGAACTTAAAGGT 57554 29 100.0 32 ............................. GGATTTTGGATCCGCGTCCAGGCGACCATCAC 57615 29 100.0 32 ............................. AGGTTGCTCGGCCACAATGATGATGTGAAATC 57676 29 100.0 32 ............................. TCGCTGCGTGGGCCAAACTCTGCATGATTGCC 57737 29 100.0 32 ............................. ACGAGAGGCATGTCAAATTCCCAGCACGTTCA 57798 29 100.0 32 ............................. TATTTTTCCCGATACGGTTGTCAACGTTATGC 57859 29 100.0 32 ............................. ACCGCCACTCGGTGCAGTTGTCGATTGAATTT 57920 29 100.0 32 ............................. CGCCCAATGGCTGGCTGGTCCGGTTGGTTACG 57981 29 100.0 32 ............................. CGGAGTCGAATAACCAATGAGTGCCCCTATCC 58042 29 100.0 32 ............................. AAAGCGTTGATCCAAGCCCTGGGGCAGGAGGT 58103 29 100.0 32 ............................. AGCGGCAATTCTTGGCTAAAAATCAATTACAT 58164 29 100.0 33 ............................. TCGCCTTTGATCAGGGTAAAGAGTTGCGTATGC 58226 29 100.0 33 ............................. GCCACTCATACCACTGCCACCGGTGACCGGTGA 58288 29 100.0 32 ............................. CGGCAGGCAACGACGTCGCCAGCGCAGTCGGG 58349 29 100.0 32 ............................. GATGATGCGCCGCCATCGCACCCGCTCGACAG 58410 29 100.0 32 ............................. TGGAACGCCATTCCAATACATTCTGTTTGATG 58471 29 100.0 32 ............................. TTTGTCTTGACTATCGACGAGGCATAACTGGA 58532 29 100.0 32 ............................. CCTTCGCAGCCCCGGCCGGGGACTCATCGAAC 58593 29 100.0 32 ............................. CCGGTGTCGGATGCGTTTCTCGTGTTGATTAT 58654 29 100.0 32 ............................. TATCGGCAGGCCCGACGATTCTTACCAAAATG 58715 29 100.0 32 ............................. CGATGGGCAGCGCCTCTATGTAGCGTGCCAAT 58776 29 100.0 32 ............................. TCAGCAACCCAGGAATCGAGGTCCGTGCCACT 58837 29 100.0 32 ............................. TCCTTGTCCAGATAGAACAGGTCGGAGTAGGA 58898 29 100.0 32 ............................. CTTCCACGGCCTCATCCAGCGGCACATCCGTA 58959 29 100.0 32 ............................. TCGTCCGGATTTTGAGCGAACTTTCCATACGC 59020 29 100.0 32 ............................. CACTACGCCGCGTTTGAGCAGGCGGGCCTGGA 59081 29 100.0 32 ............................. CTGCGTGCTCAATTGCGTGCCTTGTTGGGTTG 59142 29 100.0 32 ............................. GCTGCGCTGGCCGAGAAGGGCGTGGAAATCCC 59203 29 96.6 32 ............................A ACTGGCAAGTGGGCGCAACCGTGAAGGTTGGC 59264 29 100.0 32 ............................. GGGAAAAACAATGCTTGATATTCTTCTGCGTA 59325 29 100.0 32 ............................. ACTGCCGAGACGAACGAGACGGTGGAATTCGA 59386 29 100.0 32 ............................. AAGCGGTATTCGGTCGAAGGCCCGGTGGAATT 59447 29 86.2 32 ............TGC..A........... GCCACCAAGACGGCGAGTGAGGATATGCGAAT 59508 29 86.2 0 ...........AT...........TG... | G [59525] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.4 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCTGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTCCGCGCCGGCGTATACATCGGCGATGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCAGGCAGCCGATGTCACGACCCGGATGCCGCTACACGCTAGTGCCGGCTTGACCGCGCCTTTTAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCTCCGGGCCGCTGGCTGCGACGCGACATCGCCGCTGGGCTGGATCAGGCCGCCAGCGCGGCACGCGCAGCGGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGTGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //