Array 1 4521-6338 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQGE01000005.1 Neisseria meningitidis strain M29015 M29015_CHA3856A13_cleaned_ctg_7285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4521 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 4587 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 4653 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 4719 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 4785 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 4851 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 4917 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 4983 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 5049 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 5115 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 5181 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 5247 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 5313 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 5379 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 5445 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 5511 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 5577 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 5643 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 5709 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 5775 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 5841 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 5907 36 100.0 30 .................................... TGCGGAAGGAAGTGTCTGCACGCAGGCCGA 5973 36 100.0 30 .................................... AAGCCACCGCCGCTTTGGACGAACCGACCG 6039 36 100.0 30 .................................... TTGACGGTCGGGCGGTGGCCGGTGTTTTGA 6105 36 100.0 30 .................................... ACCTAAAATTCGTCATTCCCGCGCAGGCGG 6171 36 100.0 30 .................................... CTCGGATTACAGCTATTTCGTAAAACTGTA 6237 36 100.0 30 .................................... ACAAGGCGCAAACACGCGGGGCGGGACGCA 6303 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //