Array 1 84707-85685 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPU01000073.1 Escherichia coli strain JML108 sequence073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 84707 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 84767 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 84827 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 84887 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 84947 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 85007 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 85067 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 85127 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 85188 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 85248 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 85308 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 85368 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 85428 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 85488 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 85548 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 85608 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [85656] 85656 28 78.6 0 CC..................A...C.CT | T,C [85674,85678] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.7 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 94745-96034 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPU01000073.1 Escherichia coli strain JML108 sequence073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94745 28 100.0 32 ............................ CGTATCCCTGATAACGCCATTGATTTCATCCT 94805 28 100.0 32 ............................ TTTTCTGATGAACGCCCTTCAAGCCGCTTTCG 94865 28 100.0 32 ............................ ACTGGAAACCATATCCAGTCCGACTTTCAGAT 94925 28 100.0 32 ............................ GAGATTAACTTATGACAACCAGTTCGGTACGT 94985 28 100.0 32 ............................ AGGGTCTGATGCGATTTCCCGAAAGAAATATA 95045 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 95105 28 100.0 32 ............................ GGAAGCTACATTGAGCACGCACGCTCAATATT 95165 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 95225 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 95285 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 95345 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 95406 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 95466 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 95526 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 95586 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 95646 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 95706 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 95767 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 95827 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 95887 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 95947 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 96007 27 92.9 0 .......................-C... | T [96027] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //