Array 1 439338-440587 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCO02000002.1 Pseudoalteromonas sp. S4498 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 439338 29 100.0 32 ............................. CACTGCATAGCTGTTTGAAATATTCATCTGGA 439399 29 100.0 32 ............................. AGCTGCTTGCTTTATTACGTAAATCACTCGGT 439460 29 100.0 33 ............................. TATTATTTCTATGTTTAGTATTGGGAGTCCGAC 439522 29 100.0 32 ............................. GCTTAAAATAATTAAAAGCCAACTCTACGAAA 439583 29 100.0 32 ............................. GTAATGTTTTATAATCAATTGCATTCAAAATA 439644 29 100.0 32 ............................. TTGAGGCTAATTATTGAGTCAGAGCTTGAGGC 439705 29 100.0 32 ............................. TTGAGGCTAATTATTGAGTCAGAGCTTGAGGC 439766 29 100.0 32 ............................. ACTTGAGGCCAAGCGCCAACGCAAAGCCAAGG 439827 29 100.0 32 ............................. TGATAAATAAAATCACAAACTGATATAATTTA 439888 29 100.0 32 ............................. TACCACGGCCTCAGCAATCTAGTTGCGCCATA 439949 29 100.0 32 ............................. GATCTCAACTGGATATTTTTTCAGTTCAACTT 440010 29 100.0 32 ............................. AGTGTACAATGAGCTTGTATATCTTATCTTGC 440071 29 100.0 32 ............................. CAGGCGGGGGTTCAGGTTACGTATGATCTGGA 440132 29 96.6 32 A............................ AAATAACCAATGCACAGAGTGACCACAACCAC 440193 29 100.0 32 ............................. GTAATTTTACCGCAGAAAACGGCAGAGTTTAC 440254 29 100.0 32 ............................. TTAGTCAACACATCGAGCAATTATGAAAGTTG 440315 29 100.0 32 ............................. CCGTTATAGTTCACCCCAATTTCTGCGCGGGC 440376 29 96.6 32 ............................T TGTTCTCACTCATTAGTAAACTCCACAATTTC 440437 29 100.0 32 ............................. CGACTACTCCAACGGTATTCTATTGGCAACTC 440498 29 100.0 32 ............................. TGCGTCATCCGTATCGATTTAGATTTTGTTAA 440559 29 93.1 0 .........................C.A. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCAGACGCGGGGCTAAACCG # Left flank : AGAAGCCAGAGCACACAGCGTTATTTGTGAATTAGATGGTGAAGCAATCGGATTCGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCATGGACTTTATCTTGAAGACTTATATGTGTCACAAGACAAACGCGGTGTTGGTGCAGGTAAAGGGATCATGAAGTACCTAGCAAGACTTGCACTACAAAAGGACTGCGGTCGCTTTGAGTGGGTGGTACTTGACTGGAACAAACCATCAATCGATTTTTATGAAAGCATCGGTGCTAAAGCACAAAATGAATGGATTATTTATCGCCTAACAGGGCAAGAGCTCATCGATTTTGCTGAGTAAGTATAGGGAAGTTTATTGGTTTGTTGGCTATACATTATTTGAAGAGAAACCCCCGTTCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAACATTGCAATGGTGATTTTTGCCAATAGAAACAATGAGATATTTTTAGA # Right flank : GTAGAACATTTTAGTAGGAAAGCTGTGGTGAGTAGCTTGGCTGGAAGTGGCGGCAGGGCGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCATAGTTGGTTATTAATCAACCATCAAAAAAGTGCTAGCGTGATCTCACTGTTAGTTTGTCTCAGGTCAATGACTTACTTTGTTTGTTTTGATACATTTATTTTACGAAATTTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGCATTGTTTTGGCAGGGAGAAATCCAGACCGGTACTTTCCAGAGTAAATTTAAGCTTTCACGGCCCAGCGCGCGACGTTATGTCACCGACTTTATTGAGCGTTATCAGATTGCCGCAAGCTACAATGAGTCTGAGAAAGCTTATGTGCTGGCAAGCCCCTTTACACCTAACTACATCTCTCAGGATTTTACTGAGTATACTAGTCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGACGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 451221-452716 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCO02000002.1 Pseudoalteromonas sp. S4498 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 451221 29 100.0 32 ............................. TCGTTCGCCTGATTCTGCATGTTCGTTTGCTC 451282 29 100.0 32 ............................. CTATTTTGCTTGCGGCAGTGATAGTCGCAATT 451343 29 100.0 32 ............................. GTCAAAATTGGTCGGATTTAGTTACGGCGTTA 451404 29 100.0 32 ............................. AACCGAGTAATAAACTCGGGTACGTCCGTATC 451465 29 100.0 32 ............................. CAAATGATTGAGTTTTTGATTGAACATCGCGA 451526 29 100.0 32 ............................. CCAGCCAATATGTTTAGCATACAAAGCTAGAT 451587 29 100.0 32 ............................. GTTACGGGCTTTACTGGTACTGCATAGAGCTT 451648 29 100.0 34 ............................. CGATATCTAGATAGACTGCAACTTCCTTGTCTTC 451711 29 100.0 32 ............................. TGGGAACTGATGAGGTCATATTGTTTGAGCAC 451772 29 100.0 32 ............................. CCCCAGTCTGATTGTCAGCATGGACAATGTAA 451833 29 100.0 32 ............................. GAATAAACGCAAAGCCTCCACTTTATCTCTAG 451894 29 100.0 32 ............................. AGCTTCTTCTTCCTTACCTTGCGCCCTAAGAA 451955 29 93.1 32 .............G.T............. CTGGTTAACAGAAACGGCAAATGCAAATGGTG 452016 29 93.1 32 .....T.......G............... CCTATGCCCTTGGTTGTCAATGGGGTTTTTTA 452077 29 96.6 32 .............G............... AACGTGCGAAGTTGCAGCTGGAGTTGAATGAG 452138 29 96.6 32 .............G............... TATATATAAAATACTTAGAATGTACATTTGTT 452199 29 96.6 33 .............G............... CCATTGAACAGACCGAGGAGTGGATGGCCGTTC 452261 29 96.6 32 .............G............... CCACCATCTATTACACTGCATACGGCGTATTG 452322 29 96.6 32 .............G............... TACAAATCTGACCGAATACCCCATGATGCAAG 452383 29 93.1 32 .............G..............A GTATGAGTAGCTATCAAAAGTACCTCTACTTT 452444 29 96.6 32 .............G............... GCAGGGTGGTGCTCAGGTTGTACATCAATACG 452505 29 96.6 32 .............G............... TTGCCAGTGCCAAACGTAATCCCACACGCTCA 452566 29 96.6 32 .............G............... TCCATTACGCTTCCTTGGTTTTTAGTTTGATT 452627 29 93.1 32 .............G.T............. ATTAAAAAATCTGGTGATTTCTCAATAAAAGG 452688 29 93.1 0 ............TG............... | ========== ====== ====== ====== ============================= ================================== ================== 25 29 97.5 32 GTGTTCCCCGTACACACGGGGCTAAACCG # Left flank : CATTGGCGATGAAGGTCATCGCAGCGGAGGCCCACTATGAGTATGTGTATGGTTGTGACGGAGGCTGTACCGCCAAGATTGAGAGGTCGTCTGGCAGTATGGCTGCTGGAGATCCGTGCAGGCGTGTACGTAGGTGACGTAAGTAAACGCATTCGCGAAATGATCTGGTTTCAGGTAAGTGAGCTGGCAGAAGACGGCAATGCCGTCATGGCCTGGGCAACCAACACCGAGTCGGGTTTTGATTTTATTACCTATGGTGAAAATGCTCGAATGCCGGTGGATTTTCAGGGGCTAAGGCTGGTGAAGTACACCCCAAGAGCCGATGACAATCAGGGAGAGGATTAGCGAATTATTCCTTCATTCTACCTATGATTTATTGCTCTTTAACAAGTTGGATATTGAGATTTAAAGGCTCAATAATAGATATGTTTGTACCCAAAAATTTCGGTAGATTTTAAAGTGTGTTTTTTCTTTATAAAAAACAAGTATATAATTTTAGA # Right flank : GAACGCTCTATGGCGTAGTACAGAAAAAGAAAGCGTGCACGGGGCTAAACCTGAGCTATTCAGTTCTGAATCATGTGCTGTAATTCGTCCGTGAAGCAGCATCCTTCACGCATCCATGTGCTCGCCTCAGCAGGCTGCAAGACAGTGGTGACTCCAGGTTTCCATTCGGGCCAGTGGAGCTGTTCACAATATTCCAGATATTTTTGCCCTTGCCTGTACTCTCGGAATTAAGCTGCTTCGATCCCCCTCTGCTGGTTATTTATCTACATGACCTAAATCACGCTCAGGATCTAATAAGTCTCTTACTCTTCTTTTTAGCACTTTGGCTTCTGGGAAACCATCATCAGCTTTGCGGCACCAAATTAACGTATCATTGTAGTAGATTTCGAATACACCTTTACTGGCTGGTGCAAGTGCAACTTGTTGTAGGTCATCGGAGAAAGTTGAAAGCAACTCTTGTGCAAGCCATGAGGCTCTCAGCATCCACTGGCATAACACGC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //