Array 1 180637-179021 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABO01000099.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4997_R1 NODE_8_length_203820_cov_0.780631_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180636 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 180575 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 180514 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 180453 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 180392 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 180331 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 180270 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 180209 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 180148 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 180087 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 180026 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 179965 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 179904 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 179843 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 179782 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 179721 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 179660 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 179599 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 179538 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 179477 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 179416 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 179355 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 179294 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 179233 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 179172 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 179111 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 179050 29 100.0 0 ............................. | A [179023] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198492-197306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABO01000099.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4997_R1 NODE_8_length_203820_cov_0.780631_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198491 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 198430 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 198369 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 198308 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 198247 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 198186 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 198125 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 198064 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 198003 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 197942 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 197881 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 197820 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 197759 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 197698 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 197637 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 197576 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 197515 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 197454 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 197393 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 197333 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //