Array 1 1097559-1095238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYI010000001.1 Listeria booriae strain FSL L7-0236 NODE_1_length_1337295_cov_60.171688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1097558 30 100.0 36 .............................. TCTTTACATGCGCAGATTGGCTTAGGTTTGGAACAA 1097492 30 100.0 36 .............................. AGCGATCGATGGCCTCTACCATCAAAAAATCACCTT 1097426 30 100.0 37 .............................. GGCGCATAGGTGTTAATTACACCGTTTTTCCACATTT 1097359 30 100.0 35 .............................. AACGAAAGGGGCATAAAAAATGCAAGAAGAACTCA 1097294 30 100.0 35 .............................. TCACTTAACTTATATTCTTATTATAAACGCTAACG 1097229 30 100.0 35 .............................. CCGGTAACTCCGATAGAGCCGCCAATTGTTCCTGA 1097164 30 100.0 34 .............................. TCTATCGCCTTATACGCACGTTGATTTCGAATAC 1097100 30 100.0 36 .............................. ACATTCTTTAGTGAACAGCTCAAATGGCAGGAACAG 1097034 30 100.0 36 .............................. TCGGGAGTCGCACCAATTAAATAAAGACTATTGATA 1096968 30 100.0 36 .............................. ATGTCCAGGAATAAGCCGCATTTAGGGCATTGCTGT 1096902 30 100.0 35 .............................. GATGATGAGGAATTGGACTATCCAGGCAAATACTA 1096837 30 100.0 36 .............................. AATTCCATCTTTACATTCCTCATTTCTCTGCAATTT 1096771 30 100.0 36 .............................. TACGTTGGATGGTAAGCGCGCAGTGGCTAATATCAT 1096705 30 100.0 39 .............................. CTTGTTAGACCCGAACTTCACGTTGAAGATTCCCGTCGT 1096636 30 100.0 36 .............................. ACAACCACTTCGCTACGCCTCCAAACTGTCAACTGT 1096570 30 100.0 36 .............................. CGATTAATCACCTCGATATCGTTCATATGAATGGCG 1096504 30 100.0 37 .............................. AAGTCATTAATGAGTTCTTCTAATCGCGCTTCTATAA 1096437 30 100.0 36 .............................. TACTATTGAAGAGTTAGCAGGCATACAACAAGTAAA 1096371 30 100.0 35 .............................. TGATATTTTCGTTATGGGACAATGTCTCTATAAAG 1096306 30 100.0 35 .............................. CTGGGATGATTATCGTTTGGCAGAAGAGTTACAGC 1096241 30 100.0 35 .............................. GATTGTGACGGATTTATGTTCCCGATTCTTAAAAC 1096176 30 100.0 36 .............................. CATCATAGCTAGGGGCGGTCGTTCTTCCATGAAGTC 1096110 30 100.0 35 .............................. TCAATAACGACGGCTGGAACATTGTTGGTTTTTGC 1096045 30 100.0 34 .............................. AAACTAATTATAATATAAAAGTTTAGGTGTTTCC 1095981 30 100.0 35 .............................. TCGGAAATTAGAGATTATATGGGTGTTGGTGCTGT 1095916 30 100.0 35 .............................. ATATGCGTTACGGGTCGACCTGCGGGATAGGTTTC 1095851 30 100.0 37 .............................. CACTCAATGACGATGTCATTTTGTGCTGGCAAATCAA 1095784 30 100.0 36 .............................. AACGAACGACAATCGGTACTACGCTGGATGAACATG 1095718 30 100.0 35 .............................. TTGGAACACGGATATATAAATAACCTGCTTTCACA 1095653 30 100.0 35 .............................. TCCTTACAACAGGTTATAAACAGTCTTCCGAGTAA 1095588 30 100.0 36 .............................. AGATTTCTGCAGTTGCAGAAGCAGCTGGACAACTTG 1095522 29 83.3 30 ...................-....CG..TC GTCATTGTCCAGATCGTTGACTTCCGTTGC 1095463 30 100.0 35 .............................. TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 1095398 30 96.7 36 .............C................ TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 1095332 30 93.3 35 ........T........T............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG A [1095314] 1095266 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 98.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGACCCGAGGATTTTCCTCGGGTTTTTCTTTATGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGATTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGGTGAGGTACCT # Right flank : TAGATGGCTCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTATTTAGCGGAGGACGGGCTGTTGACTACGCTTCAATCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 291977-290698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYI010000002.1 Listeria booriae strain FSL L7-0236 NODE_2_length_442794_cov_67.408295, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 291976 30 100.0 38 .............................. ATAATTTGCGCTAGCAATCTACATGCAGCGGTAATTCT 291908 30 100.0 37 .............................. TCGTAAATACCGCATTCCCTCGAGTTGCAATGATACT 291841 30 100.0 36 .............................. TATGGTAGGTCTGGTGTAATGGCATGGCCGTTTGCA 291775 30 100.0 34 .............................. GTACTATTCCCAAAATGCCCATTGTTACAATAAA 291711 30 100.0 36 .............................. CTAGATAAAATCTCAGGCTTCATGTACTGGTACTTG 291645 30 100.0 34 .............................. TACACTTATACAGCTATCATCGACTACGACCAAA 291581 30 100.0 35 .............................. GTAGAAATAGCATTTTTATAGTTATCAGGGTTTGC 291516 30 100.0 36 .............................. GGAGCTAGAGCTTCAAATAGCGACCATGGGAGAAGG 291450 30 100.0 37 .............................. ATGAGAAATTTAATATTTTAAGAGAATCTCTTATAAT 291383 30 100.0 36 .............................. CCGTTTGATGTCTACAGTTAATACCGCTTTGGCCTG 291317 30 100.0 34 .............................. TTTGGAATGCTTCGATTGAAAGTATAAAAAATGC 291253 30 100.0 35 .............................. ACATCTTGCGGATATTAGAAAACGACCCGTATTTA 291188 30 100.0 36 .............................. GCGTTACCTTTCGCGTAGTTGTTACCGAGTGGTGCA 291122 30 100.0 37 .............................. TGATGATTAGCTCGTCATCCTTACATTCGTGGATATA 291055 30 100.0 36 .............................. CACACATGTATACCACTTGTATTCTTACGATACTTT 290989 30 100.0 35 .............................. TAGAACACGTTAACGTTAATTAAAAGACCAAACAA 290924 30 100.0 35 .............................. GTCGTCATGTTATCTGAGTGTACTATATCATTTAA 290859 30 100.0 36 .............................. TACTCCAATTCTCGATGAACCAGAAAATAAATCATT 290793 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 290727 30 73.3 0 A......C.C..G..C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 98.5 36 GTTTTTATCTAACTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAACAATGGATAACGGTGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAATATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACGCTACTTTCCAGCTCTCATAAAAAAGCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCGCGTTGCAGCAATTCCTGTGCTGTCGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTTCCTAGAATGGTTGTCATCTTCTCGGCCACTTCATAATACGTCAATGCTTCTTTTCCAGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 426110-426342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYI010000002.1 Listeria booriae strain FSL L7-0236 NODE_2_length_442794_cov_67.408295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 426110 36 100.0 30 .................................... AAGTGCTTACTAAGATGAGAGAAGTAGAAA 426176 36 100.0 30 .................................... GAAACGTTATCGTCAACGCCGTATTGTCGC 426242 36 97.2 30 ..............C..................... GCGAAGTTTATTATAAAGGCGACAGAGTAG 426308 35 83.3 0 ..............C..C.........A.A.-.C.. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAGTACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACAATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : CACCTATTTCACATACAATAACATAACTATACCAGAATATTAATAGGTCTGCATCTTGACAGATTACCAAAACATAATTGTTTTTCATCAATTAAGAGACTTCCTAAAAATCATCACTCAAACTCAAACAATTATCTTCAGCCAACAAAATAGCTTCCTCTTGAAAACCTTCATACAACTCAATACCTGCACCTCCAGTTTTTCTACGAGATCCATCCAACATTTTTGTAAGCCAGCAACTGGGTTATTCAGCAGGTATTCATTTAACTGATACTAATTCTTTTACCATTACAAGTACCCACTATTCATCGTTATCTCCATATAATGTATTCAAAAATGTTTTCAAATCCTCAGCAAGCAAAAACATATTATCCATTTCCGAATCAAATTCCATATCGTGTCGCCAAAAATAAACTTTTCCTTTATACTCGCTCTTCTCTGTTCCTATGCAGATTTCGTTTCCAGCAGGGTCGTCAGCAATAGAAATAAAACCATCTGGT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 48571-47690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYI010000007.1 Listeria booriae strain FSL L7-0236 NODE_7_length_114576_cov_58.181250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 48570 30 100.0 35 .............................. ACGGTACTACCATCCACATAGGTATAGCGTCCGTC 48505 30 96.7 34 .C............................ CAAATACCCCGTGAATTTTAAACGCATTTAATGC 48441 30 100.0 35 .............................. GTACTTTATAAAAATCAAACGATTATAATTAAAAT 48376 30 100.0 36 .............................. AGAGGGTATACTGCACTAGGGGACGGGAGTGGGTCT 48310 30 100.0 36 .............................. CATGTAAAGGGTTAGCTGTTATATAGAAAATTTTTC 48244 30 100.0 36 .............................. ATTTCAAGCCGTTTCTTATGGGCAAATTTTGTTACG 48178 30 100.0 34 .............................. AAGGAAGTATATGCATCATCTACAACTAAATTCA 48114 30 100.0 36 .............................. ACCTGTGAAGCCGATGAATTTGGGCTACCGTCGATG 48048 30 100.0 35 .............................. GAAATAGTAGCTACATTTCGTTTACTGCGTTTTTC 47983 30 100.0 36 .............................. AAGTAGATAGATGCTAGGTTTATAACAAATAACACA 47917 30 100.0 36 .............................. TGACAAGGTTTATTTAGCAATGCTTTCGATTGCATT 47851 30 93.3 36 ....................T........T CCTCAACTGGCACAGCAAACTGCCAATACCGTTCAT 47785 30 93.3 36 ....................T........T ATGGATGCAGACAGGGATTATAACGATCCATTCCAA 47719 30 80.0 0 ............A.......T..CA...TC | ========== ====== ====== ====== ============================== ==================================== ================== 14 30 97.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAG # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCTGTCGGATTTGCAGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTGGCAAAAACAAACCGTCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCTCCACTCGACACATTTGAAGGAATACTCATCGCGGTCATACACCGGAAAAATGATACTGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAATACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //