Array 1 163511-162046 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCB01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM3712 BCW_7511_1__paired__contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 163510 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163449 29 69.0 81 ....................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTC 163339 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163277 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163216 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163155 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163094 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163033 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162972 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162911 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162850 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162789 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162728 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162667 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162606 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162544 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162441 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162380 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162319 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162258 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162197 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162136 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162075 29 96.6 0 A............................ | A [162048] ========== ====== ====== ====== ============================= ================================================================================= ================== 23 29 98.2 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181624-179643 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCB01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM3712 BCW_7511_1__paired__contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181623 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181562 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181501 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181440 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181379 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 181318 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 181257 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181196 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181135 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 181074 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181013 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180952 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180891 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180830 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180769 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180708 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180647 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180586 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180525 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180464 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180403 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180342 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180281 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180220 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180158 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180097 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180036 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179975 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179914 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179853 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179792 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179731 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179670 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //