Array 1 7950-5336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKMK010000002.1 Listeria monocytogenes strain LM19_15 contig2_denovo_LM19015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7949 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7883 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7817 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7751 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7685 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7619 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7553 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7487 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7420 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7354 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7288 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7222 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7156 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7090 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7024 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6958 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6892 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6826 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6760 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6694 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6628 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6562 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6496 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6430 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6364 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6298 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6232 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6166 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6100 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6034 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 5968 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5902 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5836 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5770 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5704 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5638 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5572 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5506 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5440 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5374 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5339,5342,5347] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //