Array 1 1347426-1344786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014306.1 Burkholderia sp. PAMC 26561 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1347425 32 100.0 34 ................................ TGGATCTGCAAAGAGTATGGCGTTCGAATGTTCG 1347359 32 96.9 37 T............................... GCCGTCACCCGCGACCGGATAAACGTGTTCGTACCGA 1347290 32 100.0 35 ................................ GCCTCCCCCACTCCAGCCGCCTCGGTCGCGGCGTT 1347223 32 100.0 38 ................................ GTAGGGTTTCGGCGGCGCCCCGTGCGCTGCATTCGCAC 1347153 32 100.0 38 ................................ GTAGGCTATTGCTCAGATTGCATCAAAGTCTTTACTAT 1347083 32 96.9 34 C............................... GTAGGCTTGTGCGAAAGGGTTTTCTCCGGCGATC 1347017 32 100.0 33 ................................ AGTAGCCGGCGCGATCGAGGCGTCCGACGGGTT 1346952 32 100.0 32 ................................ GGCGAAGGCCACGGCGAAGTGTTTGTCGCTGA 1346888 32 96.9 33 C............................... TCGGTGGGTCTAGATGGCACCTTGTGCCTACCG 1346823 32 100.0 34 ................................ GTCCGAAGACGAAGCCGCGGCAGTCGGAATATCC 1346757 32 100.0 35 ................................ GGGCATGGTCACCTCCGGAGTTAAGTGAAAATATT 1346690 32 100.0 34 ................................ GTGCCACTCTTTGAAGCCTTTGACCCATGCGATG 1346624 32 100.0 33 ................................ GTTGATTGCAAAATATGCCCGGCGCACGATCAC 1346559 32 100.0 37 ................................ AGGCACCGGCGAAGCAGGCTCGATGAAAGTAGCCGGC 1346490 32 100.0 34 ................................ CTGCAGCGTCGCGACCCTGATTGGTGTTCCGCCG 1346424 32 100.0 35 ................................ GTCGATCTCGAGGCGCAATACGCGCTAACGATCAA 1346357 32 100.0 35 ................................ TGCGTGTACGAGATATGCTCGGCGATCATCGTCTC 1346290 32 100.0 37 ................................ CTGCCGCGTGAGGATCGCAAGAAAAAGACCGTCGGCG 1346221 32 100.0 35 ................................ GGCAGGGGCTCGCAAGTATCTTTACCTCGATTGGC 1346154 32 100.0 35 ................................ TCCGGTGCGGGTAAGTCCCTCCAAAAAGGGTTTGA 1346087 32 100.0 36 ................................ GCAAGGAGAGCGCGCTTGCCGTGATGCATTGGTTTG 1346019 32 96.9 37 ...C............................ CTCGCGGCGGCGAAGCGCGGAGATTGGGCCACCGCGA 1345950 32 100.0 35 ................................ GCGGTACTCAGCGCGTCGAGACATGGCACCTGCCT 1345883 32 100.0 36 ................................ TTCAAACCAGTTGCAGAGCAGCGTTGCATCGGGCGC 1345815 32 100.0 33 ................................ GACCACTCTTCTTTAAACGGTTCGAAACCGAAG 1345750 32 100.0 36 ................................ TTGTCGGCAAGTTGGTCGATCCGCTTTTCAAGCTTC 1345682 32 100.0 33 ................................ TGCGTGCACTCGAAAAGATCGACGCTATCTATG 1345617 32 100.0 33 ................................ GAGCTCAACAACTGCGATGCGGTGGACATCGAT 1345552 32 100.0 36 ................................ GTGGCAACACGCTGAGCGCGATGGCGCTGTCGTTGG 1345484 32 100.0 35 ................................ GGAGTAACCCACGGGCTGCTGCTGGTCAACGCGTT 1345417 32 100.0 34 ................................ AACATGCAGAGGTCGAGGAACGGATTGCCCGTTG 1345351 32 100.0 35 ................................ GGGTGTGCCTCCTGTTGCATCCACCAAGTCGCGCG 1345284 32 100.0 36 ................................ GATTTGGCCACCGGCCGCGTAGGTGTAACGAGCAGC 1345216 32 96.9 35 ..............A................. CTGTCTAGGTATGTCAACATACGCCAGCACATTGC 1345149 32 100.0 35 ................................ CATGAACCGAAGCGTGTCTGGAAATGTGTGCTGTT 1345082 32 100.0 33 ................................ TTTCAACGCCAACCCGTCTTGGGGGTAGTCGAC 1345017 32 100.0 33 ................................ CACGTGCCGTACACGTTGCCGCCGGCGCCACGC 1344952 32 100.0 37 ................................ GAAACGACGCCGCCCGATTGCATCATTGCGATCTCAA 1344883 32 90.6 34 ............G..A....A........... GGGGGTTGGGGAGTCGTGCAGCGCAACCTGTGAT 1344817 32 71.9 0 .....A.C...TGG..T.A.....AA...... | ========== ====== ====== ====== ================================ ====================================== ================== 40 32 98.7 35 GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC # Left flank : TGAGCTACGACGTGGCGACATCGACGGAGGGCGGCGCGCGCCGTTTGCGACGCGTCGCTCGCGCCTGCAAGGATTTTGGCCAGCGGGTGCAGTACTCGGTGTTCGAGATTGAAGTCGATGCCGCCCAATGGACGCTGTTAAAACGCCGGCTTGTCAGTGTGATCGATCCCGATGTGGATAGTTTGCGGTTCTACTTCCTTGGGAATAACTGGGAGCGGCGGATTGAACACATCGGCGCGAAAGAAGCGGTGGATTTTAATGCGCCGTTGATTGTTTGAGAGGGGATTGCCGTTTTGGTTTGATTGTTTGGGCGAGTGCGAACGTGTAGCGACCGGGATTTTACGGGGAGGTTCGCGGATTTGCACGGCGTTGAATTTGTTAGGGATTTTTTTAAGCACGGTGGGAATTTGAGGACGGAGGCGTGTTTGGGCCACAGAAGAGCAGAGGTTCGCGGAATTGGGCGGTTTTTGTCTGGCAGTACAGTGGGTTAGGTTAGGTGG # Right flank : AAAAGCCCCTTGGCCGCGGTTAAAACCGCGTACTGTCAAGTTCTTCGCGCGTGGGTTGAAACGACCACCGACGACCAAACCAAAATCGCATAAGCGCACATTGCACTCTTCCCGTCACGCGGACCGACAGCAGCGGCACTTCATCTTCAACGCTGGCCGCCCATTCTCAACTCGACCGATCGCCATGTACTATATCTCCATCACCAAACCACCTTGCGCATTGAAAAATAATTTCAACAATCCTAACGAAATCCCTCATTCGTCAACAGCGCAAACTCGATCATCTTGAAAAATTGATATATCCATGGCCCACCACGTTCTAATCTGCCTCCCCACCTACGGCGAAGAAGTCCACGTCAATTTCGCGTTTTCGCTGCTCGGCCTGGCGCGTGAATTAAACAATTCCGGATCAACCTACGAACTGTTGCACGTTGCATCGTCGCAGATTATTCGGGCGCGTAACTTCTTCGCCAATTATTTCCTTAATAATCCTAAATTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1358637-1355560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014306.1 Burkholderia sp. PAMC 26561 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 1358636 31 100.0 32 ............................... GCATCGTTGAGCGCGAGGATATCTCCCGCTTC 1358573 31 100.0 35 ............................... CGCCGCCGCCCACGGTGTATTGGATCGGCACCGTC 1358507 31 100.0 34 ............................... GGGCCATCAACGTAGATCATTGCGCGCAGCCGGT 1358442 31 100.0 35 ............................... GGGCTCATCAGCTCGCCCGTTCTTTATTTTCTAGA 1358376 31 100.0 39 ............................... CAGCCGGAACGCGTCAACCAGCAACGTCGTGCGCCCGCC 1358306 31 100.0 34 ............................... CAGCCCCCTCCGTCGGTATATTTTGACTAACTTA 1358241 31 100.0 37 ............................... AATATTAGCGCCTCCATACGATAAATCCTAATCACGC 1358173 31 100.0 36 ............................... ACCGAAGAATGCCCTGCGGTCATCGCGGGGCATTGT 1358106 31 100.0 35 ............................... CTGCTCGCGGTGGACGAGGGACGGATACCGCCAGG 1358040 31 100.0 36 ............................... GACGTAAATAACGCGCTTGCAGAAACGTGGCGGGAC 1357973 31 100.0 36 ............................... GACGGCAGTGGACACGTATCGTCCGCCTTACGCAAA 1357906 31 100.0 34 ............................... ATGGGTTAGTACTTCGATGCGCGAGATAAAACTC 1357841 31 100.0 35 ............................... GATTCGATGCTGGCCGCCGCGATCCACACCTCAGG 1357775 31 100.0 37 ............................... AGGCCGCCCGGCGGAACACCAATCAGGGTCGCGACGC 1357707 31 100.0 35 ............................... CTGATCGCAATCGAGACGGCAATGCGTCAAGGCGA 1357641 31 100.0 34 ............................... GGTCTGCGGCTGACCACAGCACCGCGCGCGGGCG 1357576 31 100.0 36 ............................... CGTTGTCGATATCGAAGCAGTGATCCAACAGGTTTC 1357509 31 100.0 36 ............................... TTTTCAGGGACAGGGAACATGCCACGCGCATCAAGC 1357442 31 100.0 37 ............................... CCTGATCGGCGGATTCTTTCTCGCGCGATGGGTTGCA 1357374 31 100.0 35 ............................... GATCCCAGCGAGATGCGACCGCGTTTCGTCGTGCC 1357308 31 100.0 38 ............................... GGGCAGCTCGTGAACGAGATCCATCCCTGCTACGCCGC 1357239 31 100.0 33 ............................... ATCGACAGCGGCGTAACGGCCGATGTGGTGCGC 1357175 31 100.0 35 ............................... AAGACAATTGGTCTGGATGTGATGTTTGGGTCAGC 1357109 31 100.0 36 ............................... CATTCATGCTTATCCCAACTTGAAAGGGAGCACAGC 1357042 31 100.0 34 ............................... GCTTGGGAGGCTTGGCAAGCCGCACGCGCCACGC 1356977 31 100.0 35 ............................... GATTGTTGACAAGCATCAGTCACACATCGCATCCC 1356911 31 100.0 36 ............................... ACCGGCAAACAGGTGCTGCTTTGTATGGACGTCGAT 1356844 31 100.0 37 ............................... GCCACGGCGCCTGCAATGTCGCCAACGACGCGTTCGG 1356776 31 100.0 36 ............................... TTTGAGGCCGTTCCAGCCCTGCGGCTGGGTCGTACC 1356709 31 100.0 34 ............................... GCCAGCATCGACGTTTGGCGGAGCTGCAACTATC 1356644 31 100.0 38 ............................... ACATGCCGGAAGTGCTCGATTACTCGAGCCGCCTGCTC 1356575 31 100.0 35 ............................... GCCATGAAAACACTCGTCATCGCCACTCTTGCCCT 1356509 31 100.0 35 ............................... AACTTGACGGACGGCGACGAGATTCTCGTTGAGAT 1356443 31 100.0 35 ............................... TGCTTGGTGCTGTAGGTACTTTGCCCGAGCCGGAT 1356377 31 100.0 37 ............................... GCGACTTCGAGAACGTCGTTGTTTTTGTCGCCGATGA 1356309 31 100.0 34 ............................... GTACTCACTTTACTTGCTCCATAAGCCATTGATA 1356244 31 100.0 34 ............................... AATATCGCAAGTGCGATCTATTCAATGACACCTG 1356179 31 100.0 36 ............................... TCCGTTAAGTGCAGTTTCGTCGCCCGATTGCGCGCG 1356112 31 100.0 35 ............................... GGTGACCGTCACATCGACGCCGCCATAACCCTCGA 1356046 31 100.0 34 ............................... AGCGCCGCATTCAACTCGCGCGCCGATTGATCCA 1355981 31 100.0 33 ............................... GATCCAGCCCGTCGCCTGGAGATGCACGTCACA 1355917 31 100.0 36 ............................... CTGGCTCAACACCCCGTGGCATCACCAGGCGCGGGT 1355850 31 100.0 34 ............................... GCCGGTAGGGACGGCAACGTCGAAAAGCAAAACG 1355785 31 100.0 33 ............................... TGGTGCAACTGGCAAAGAGTAATGGCGCGGTGA 1355721 31 93.5 34 .............A................A CACTCAACCATCCAGGAGGTCTGGACGTACGAAG 1355656 31 83.9 34 .........C............AC..A...G TGGCGCAAGTACACACGGCCACCGCGCTCGAATC 1355591 31 71.0 0 ....A.CAT.........G..T..AAA.... | A [1355577] ========== ====== ====== ====== =============================== ======================================= ================== 47 31 98.9 35 GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC # Left flank : CCGTGCACACGATGCTCGTCCATCGATGGACGAAGGACCAGGTGCGGAGGGATTGGGGGGTGAGCATGAGGCGAATTGCAGTTCGTTCTGGTTGGGTTGCTGGGCGAGTGGGGCGTTGGACGCGTCCAGTTGGCGTCTAAATGAGAATGATTATTATATACGTCGGCGGCCCAGCCTTTCGGTTTGCTTAATGGTCCGGAGAACGAAATTGCTTGGGGTAATATTCAGCCGGGTTTGTTGGGTGATTTATGAGGCGGTTTTGTGGCGTTAATGTGTGGCGGGGGCTTTGAGTTGGGTCGATGAGACTGGCAAGCGCGAACCGGTAGCGACCGGTGTTTTACGGGGAGGTTCGCGGAATGATAGAAGCCAGATTCGTAACGGTTTTATATGGATGAGGCGCTGGCTGTGCAGTTTCTTGGCGATGCTAAGCAGCGTTTTGCAGCAGGTTCGCGGAACGAAGGTGTTGGTGGCTTTGAAAACAGTAGGTTACATGGGATGAG # Right flank : AGTCAAGACCGCGACGCTCCACAGCGACAAAACGCCGCGCCCCCCCCCTGCACACAGTCGGAAATTTGAATGACATCAAGCTAGGTCATTCCGCGGCCCTACCAACTCACTCAAAAATTACAATAAATTCATTTTATAAGATACCGCCGATAGTAAGCTCTGCGAATTGCAGGTTGAACATCGATAAAGCGGCGATCCAAACCGCCCGATCCCAACGAGTAAAAACGCCTGCCAACCATTCCAAATGGCGACGCCCGTGACAAGAATTTTCCACGCACACTCCACGTCTAACGCTGACGAAACTGACTGGCAAACACTCCCAGATCATCTGAACGCAGTGGGAAAACTCGCGGGCCAAGCGGCCAAACATTTCAACGCAACCGTCCTCGCGGAAACGGCTGGAAAGCTGCACGATCTCGGCAAATACACTGACGCATACCAACAGCGAATCCGAGGCGGTCAACGCGTGGACCATGCCACATGGGGCGCTAAAGTTGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //