Array 1 340549-341674 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRK01000012.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_70 contig0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340549 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340610 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340671 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340732 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340793 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 340854 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 340915 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 340976 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 341037 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 341098 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 341159 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 341220 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 341281 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 341342 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 341403 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 341464 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 341525 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 341586 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 341647 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 358298-360829 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRK01000012.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_70 contig0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358298 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 358359 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 358420 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 358481 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 358542 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 358603 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 358664 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 358725 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 358786 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 358847 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 358908 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 358969 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 359030 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 359091 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 359152 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 359213 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 359274 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 359335 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 359396 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 359457 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 359518 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 359579 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 359640 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 359701 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 359762 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 359823 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 359884 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 359945 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 360006 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 360067 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 360128 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 360189 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 360250 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 360311 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 360372 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 360433 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 360494 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 360555 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 360616 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 360677 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 360739 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 360800 29 96.6 0 ............T................ | A [360827] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //