Array 1 34815-32667 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIY01000011.1 Lacticaseibacillus paracasei strain CCC B1205 scaffold11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34814 36 100.0 30 .................................... AAATTGCACGTGCGATGACCACTTCATACG 34748 36 100.0 30 .................................... TGTTGACAGTTAGCTGGTCGATACCTTCGT 34682 36 100.0 30 .................................... ACCGATGGTGTGGCTGATAGATTAAACCTT 34616 36 100.0 30 .................................... ACAAAAGATACTCAAACGCAATGGCAATCG 34550 36 100.0 30 .................................... TGGAGAAAAGTTTAATGGGCTAACCGTCAT 34484 36 100.0 30 .................................... CAAGGTAATCGTTCCATGCCTCTTGGTTGA 34418 36 100.0 30 .................................... CAGCCATATATACTGCCAATAATGAATTTC 34352 36 100.0 30 .................................... AATCAGCCGGATTAGTGCTGTCTGCCTGTG 34286 36 100.0 30 .................................... CAGTAGACTTCTCTACAAAGGATTCCCTTG 34220 36 100.0 30 .................................... ATTCCGATCAGGCTGTGAAGTCAGTCAGTG 34154 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 34088 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 34022 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 33956 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 33890 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 33824 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 33758 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 33692 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 33626 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 33560 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 33494 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 33428 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 33362 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 33296 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 33230 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 33164 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 33098 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 33032 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 32966 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 32900 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 32834 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 32768 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 32702 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //