Array 1 2794-3475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000128.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_473, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2794 29 100.0 36 ............................. TCCTTTTCAATATATTTAACTATTTCATAAGTCCTT 2859 29 100.0 36 ............................. TGGTTTGCTCTTTAGCTGAAGAAACATAGTTTTTAA 2924 29 100.0 36 ............................. TCGCAATTATCATAGATTAATTTAAAACCACCGATA 2989 29 100.0 37 ............................. TATTCTGTCATTAATAGCACTTTTTAAAGCATTCCTA 3055 29 100.0 37 ............................. CCAGACTACTTTTATATATAAGGTCAGCAATCTCACA 3121 29 100.0 37 ............................. AAGATATACAATATTTCGAAGGCTTGCAAAGTGTTGG 3187 29 100.0 36 ............................. CGAGATAAATTTAATAAATATGCAATAAGAGCAACT 3252 29 100.0 38 ............................. ATGCCTGCTGAAATCGTTGAAAACTTAGATAATTACGA 3319 29 100.0 36 ............................. AATCTTAACCAATTTTCGTTTATATCAAATTCTCTG 3384 29 100.0 37 ............................. TCCAATCTGCAACATCTTTAGATATTACAGTTTTATA 3450 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.1 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TACTTATTTTTAAATAAACTAATAATAAGATTAAATATAATAAATCCAGTTGTTGAACCTAAAGCACTAACAGGTACTGATGATATATTAGCGAAATTATTCAATGCTGATAGACATAACATTACTATAGAAACTATAACTGAATAAGATATCACTGTAAAAAATGGAATTGAAATACTTATATTTAACTCTGCTTCATATTCTTTCATAATATCTTTCCTTTCAAATTATTTTGCTTAACTTTATTATAGCATTTAAACATAATTAAATGTAAAAATATAGTTAAAAATTAATTGAAAATATCAATTATATGTTATGATATAATAAAATTATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGATTAACAGTTGCAATGTAAGGCATTGAGAACATATGATAAATGTTATCAATTGCACTATTAGCCGCTCACTGCAAATTTGAGAGAGTTGTATATGTGTAGGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3645-3936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000107.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3645 29 100.0 40 ............................. ACAAGAAAAGCGCTATAGTCATGTTTCGACCCACCCGCAG 3714 29 100.0 35 ............................. CCAGCCGAAGCAGCTTCTGCAATCAAAAAATATGG 3778 29 100.0 36 ............................. AAAGCTTCTTTTATGCTATCTAAAGAATCTCCAAAA 3843 29 96.6 38 ...............A............. ATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 3910 27 82.8 0 ...............A....-.-.A...A | ========== ====== ====== ====== ============================= ======================================== ================== 5 29 95.9 38 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTGCAAAAAACATTTTCAACAGGAAGAGATGTAGCTTCAAAATGTTGGCAAGAGTTAGGAGATTTAAAAGATAAATATAGCACTGAATCAACTGAATATAAAGCTATACAAAACTTGCAATTAGCATTTTTTGTGGTAAAAGATGCATGCAAAAATGGAATAAAATATTTAGATAAAAATGAGTATAAATATTATGAGAAATATGAGAAAAACTGTGGCGAGGCTGGTGCGTGGTATAGTGATTTCGTGGCGTTAAAAGGAAATCTCAACTAATATGTTAAGATAAAAAGAATTATACTTAAGAAGCTTTATTTTATGATATAATAAAAATATGTAAGTTTTGCAGTGAGCGATATTTGTAACAAAGTAGGAATTAACAGTTGAAATGTAAGGTGTTGAGAGTGTATGATAAGTGTTATCAATTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGCTGCATATGTGTGAGTATTAAAAATACTAAGTTTATTTTGGG # Right flank : ACTAAATAAAAAAAAAGAAGCACTTACTTTTGGTAGGTGCTTTTATTTTGCTCAAAATATTTTAAATCAATAGACTAAGTTCTTATTTTTAGATAGAATTATATTTGAGTAAAGAATTTAATAGGGGAGAGTATATTATGTGGGGAAAATTTAAAAAATTAAGTTTGTTCAAGAAAATTTTAGTAATATTTTTAATATACCTTATTGTATTTACAGTATCAATGATGATTCATCAAGCGATACGAGATTCAAAAAATAGAAATGAAGTAGATGAAGGAAATATTACAAAAGAAAATATAATTAGTGAAAGAGAAAAAGAAGATATTTATAAACAAGAGATGCAGGCAAAAGTAGACTCTATTATACCAGAAGACTTAAAAGATAAAACAACATATTATGTTAACATATTAAACCCAACAAAAGGTGAGGGATATATAGTTAGTATTCAAGTGGAAAATTCTAGGTTTAATGATGAAAATGAGTGTAGAAACTTTACTAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 259-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000017.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 258 29 100.0 37 ............................. TGACTCTGCTTATCGCCTTATTAGATTGCTCTCTACT 192 29 100.0 36 ............................. TACGTAAAAAAAGGAAGAACAATATCTCGAAAAAGT 127 29 100.0 36 ............................. CTGCTAATTCCGGTATAGTTGCTGGTGCTACTGCTG 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTTGATGATAGTAGATGTATACAGAAATATCTATATGTATGTGCAAAAAAGTAATATAATAGGTAAAATATGTAAATATATATGCTATAATATTTTTAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAGATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTTTTATTATACCACAAATTGGTATAAATATTCAAAAATAATATATTTATGATATAATAAAATTATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACAGTTGAAATGTAAGGCATTGAGAGTGTGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAACGTTGTATATGTGTAATCATTGGAAATGCTAAATTTATTTTGGG # Right flank : TCGCTACGATTTGACAGCTAAAAATGTGCTTTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2-558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000165.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2 29 100.0 37 ............................. CTCTTATATAGGCAACATATCATTTTGTATAGATATA 68 29 100.0 37 ............................. CTAAAATAATAATGTCCTACTGTACCAAAATTCCCAA 134 29 100.0 37 ............................. AAAATTACCCAACTTACCAGAATAACTAGAACAAAGA 200 29 100.0 39 ............................. GAGCTTAAAATTTTATCTATTGCAATCGAGCTGTTTACA 268 29 100.0 36 ............................. GCATATTGCAAATAGTTTGCTACTTCTTGTGAAAAT 333 29 100.0 36 ............................. GTGTAGAATTTTGTATATAGTCCCGAGTCGGTCATT 398 29 100.0 37 ............................. TCTTTCTAGTCTGCTCATTTTCTCTTTGCCACCTCCT 464 29 100.0 37 ............................. CTCGTTAAAATTACTAAAATCTAAAACAACTTTATTA 530 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 58402-58888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000019.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 58402 29 100.0 36 ............................. AATTTTCAAAATATTTATACTTATATGATAACAAAA 58467 29 100.0 37 ............................. ATTTTTTGTGATGCGTTAACAGCATCTTGTTTTTTTG 58533 29 100.0 36 ............................. TCATGTATCCTTGGCATAAATTTAAGTTTAATTTTT 58598 29 100.0 37 ............................. ACAGGCTTATAACTATCTTTAGTTAATACGTAGCCAC 58664 29 100.0 36 ............................. TTAGTTATGACTACCTTCTATATGTTCATTTTACTA 58729 29 100.0 37 ............................. GTCGCTGACTCGAAACTATTCATTGCTTTTTGATATT 58795 29 100.0 37 ............................. CTAGATATGAATATTTAGAGGATTATTCGTACTTTCT 58861 28 86.2 0 ..................TA...-A.... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TGATATTGACTGACATTGAACTGATATAAAACTGAACATTATTTAAAGAGAACATTACTTATATTCTCACATGCTTCCTTATTCATTTTATCTAAAATGTGAGAATGGCTATTCATAGTTATTTTTATATCAGTATGTTCTAATTTAAAAAAAATTGTTTTTATGTTGGCTTCAGCTAGAAATATAATAAAGAAGTTAAAAGAAGTGTTGAATTTATGGGCAATTACACAGGAAGAATATAATAAGCATTTACAAACACGTAGGTGCTATTCAATTTATAAATTATTCTATTTTTATTTTATAGTATAAATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGACCGGTATTTATGCTAAAGTATGCTTTAACAGTTGAAATATAAGGTCTTGAGAATGTTTGAGAACTATTATCAATTGCACTATTGCTCGCTCACTGCAAATTTAAGAGAGTTGTATGTGTATAAGTATTGGAAATGCTCAATTTATTTTGAGG # Right flank : TATTATAAGCCATATCAAACATAAAATTTATATGTTATAGGTGAAGGAATATGCAATAAGATAAGCTTTATGAATAAAGAAAAATATAATATTCTAAAGGGGAATGATAGATTTTACACACTTTATAAAAAGTGTTAAATTTTATCAATGGATAGATTAGAAGGTAGCAATTAATTAGTTGTTACCTTCTTTTTTACTTGAAGTACTAATTCTATTAGCGTTTAATTATAAGTAGCTTATATAACAATATATCTCCTTCTAATTAAATAATAAGATACCAGTGTTATAATAGATACTAGTATCATAGCTATCATTGCAATATATGAACTTTTTATTAATAAACCCATCATTATGTATTCTAAACCTATCAAATAGTGGTAAAATATTTCTAGTTTCATGGTTTTTCTCTATCTATATTTCCATATTTTAATTCTAATTTATTGAGATATTTTTCACTACAATAATTAGTTTTGTGTTTAATCAAATATCTTATTGTAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 361-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000213.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 360 29 100.0 37 ............................. GTTTTTCATACTCAACTTCTTTTGTACATATGCAACG 294 29 100.0 37 ............................. CCACAAGCATTTTTATATTTATCAGGGGACATATTGG 228 29 100.0 37 ............................. ACATAACCAAAAGATTCAAAATCAAGACCTTTTATTT 162 29 100.0 37 ............................. TCTAGGAATTATTTTTATACTTTTTATATCCCCTTCC 96 29 100.0 36 ............................. CAGTATGGACATTTGCAAAAGTGTTTTACTCTTGAA 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : A # Right flank : TGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5-296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000242.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5 29 100.0 37 ............................. AAAAATTACAATTTTTATCTTAAATATATTATATCAA 71 29 100.0 37 ............................. ACGCAATAGGAGCAACTGCAGAGATTGCAGATAACGC 137 29 100.0 36 ............................. ATTTTTTATCTGTTTATACTTCTTATTTTTTTTATA 202 29 100.0 37 ............................. AATGGTAGGACGCTAAAAAAGAATTCTTTTGATGTAC 268 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TGGGG # Right flank : CATTTTGTTTTTTATTTGTTCATTTTATGTTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3-226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000260.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3 29 100.0 36 ............................. TTAAAAATGAGTGCTGTAAGTCTAACAAAAACAAGT 68 29 100.0 35 ............................. CCTTATTACTTTTATTTGTTTATCTATTTCAGCAC 132 29 100.0 37 ............................. ATGGTTGGAGCATATGAAAAATCTTACTATACAAAAG 198 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : TAG # Right flank : AAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000261.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_671, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 29 100.0 36 ............................. ATTTAAAAATAATATAATCTCTTTAGCAAAAGACTA 66 29 100.0 38 ............................. CTTCTAAACGGGGCTTGAAGCACTTTTAACTAATTAAG 133 29 100.0 38 ............................. TTTTGAGAGCTGCTACAAGTGCTATATGTTCTGCTTTA 200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 41 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : | # Right flank : T # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8045-7561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWCX010000005.1 Clostridioides sp. ZZV14-6345 ZZV14-6345_350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 8044 29 100.0 36 ............................. TATTTTTAACTTTCCCAACAGCAGAAGAAATTCCGC 7979 29 100.0 36 ............................. ATGATAAAAAAATGACTGTCAAACAAGGTGCAGAAT 7914 29 100.0 36 ............................. ATAGAATCTAATATACTTCCTCTACTTGATGCAAAA 7849 29 100.0 36 ............................. CTTAAGAGAGCTACTATAATTTCTCCTACTCCTTTT 7784 29 100.0 36 ............................. TTATTGCTGCTTGTTCTGCTTCACTTTCAGACATGA 7719 29 93.1 38 ...............T............T ATGATGTTTAGAGCATCAGTTGCAGGTTTTGCATCAAG 7652 29 89.7 33 .G.............T.....G....... AAATCACACAAAGCGTTTTTACTGAATTAAGAG 7590 29 82.8 0 C....................C.AA...T | T [7584] ========== ====== ====== ====== ============================= ====================================== ================== 8 29 95.7 36 GTATTATATTAACTAAGTGGTATGTAAAG # Left flank : GGAGGTACAAAATCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTTGATGAAGCGTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAAGAATGAAAAGAAAACTATAGCTAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAGTGAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTACGATTTTTTATATACATTGGATGTAATCATTGAAATTACTACGATATAAGCATATTTTGTGATGTGCGAAAAACACTACTGGTTACTTAATGCAATTTTAATATGGTTTTATATGTGTAAGGATTGAAAATACTCAATTTGTTTTGAG # Right flank : TGAATAAACTCACAAAACATCTATATATTTAAGTAGGTGTTTTTAGTGTGTTCAAAATATTTTCAAATAATTAGATAAATTTGCTAAATCAATAGACTAAATTAATAATTTTAGATAGAATTATATTTGAATAAATAATTTAACAAGGGAGATTATATTATGTGGGGAAAATTTAAAAAATTAAGTTTGTTGAAAAAAATTTTAGTAATATTTTTAATATATCTTGTTGTATTTACAGTATCTATGATGATTCACCAAGCTATACAAGATTCAAAAAATAAAAATAAAGTAGTTGAAAATAATGTAACGAAAGAGCATATAATTAGCAAAGAAGAAAAGGAAGCAATTTATAAAGAAGATATGCAGGCAAAAATAGATTCTCTTATACCAGAGGATTTAAAAGATAAGACAACATATTATGTTGACATATTAACTCCAACTGAAGGAGATGGATATATAGTTAGCGTTCAAGTGGAAAATTCTATATTTAATGATGAAAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //