Array 1 3761-6602 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDZ01000036.1 Orenia metallireducens strain MSL47, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3761 37 100.0 36 ..................................... GAGTTTATTACAAATAGACGATAATTATATTTATGT 3834 37 100.0 38 ..................................... TTTTTAGGTTTACCACAGGACACACCTGCTTTTTCTTT 3909 37 100.0 35 ..................................... AACTAATGAAAGCAAGGTCAATACTGTTGACAAAG 3981 37 100.0 41 ..................................... TTATTGTGCTCTGGTGTTCTATAGGATGAATTGATTATAAG 4059 37 100.0 36 ..................................... AACAGAGCAATCAAATATTCCATCTAAATCAAAATA 4132 37 100.0 36 ..................................... TATAATGGTATGCCATACAGAAATAGAAGATTCAAA 4205 37 100.0 37 ..................................... CAAGGAGGTAATAATTTATGCAAAAATGCAGATATTG 4279 37 100.0 36 ..................................... TGAAATGCAATGCTTGAGTGCAGGTAGTGAGCTGAT 4352 37 100.0 39 ..................................... TATCTAAGAATCCACCGTAATATTGAGTATTACCCCAAA 4428 37 100.0 37 ..................................... AAAAACACGATAATACAGTTAATCTCATTTGTACATG 4502 37 100.0 37 ..................................... CAGACTCTATATATATTCTTCTTCCTATGTCGATGAG 4576 37 100.0 37 ..................................... GAAGTCCATCCTGCTTTTAAAGTTAATGGAGAAATTA 4650 37 100.0 36 ..................................... GAAACCAGGTCGTGCTGCTTTAAGTAGATATATCAA 4723 37 100.0 37 ..................................... CTGCTTCGCTCAACAACCCTCGTTCTATCTTCTGAAA 4797 37 100.0 37 ..................................... GCTTGATGAGATCATAGATAGCACAGCAGGGGATGCA 4871 37 100.0 38 ..................................... GATATTAACTCTCCTTCTTTAACTCTTAGTTGAATCTG 4946 37 100.0 35 ..................................... TCCACCACCTTAACCTTATCGCCTACTTTGAAATA 5018 37 100.0 36 ..................................... GAAGTACCATTCTAAGGAGGTGAGAAGATGAGGGAA 5091 37 100.0 38 ..................................... AATAATCCTAAGAAGATAGCCGATTCAACATATGAGGG 5166 37 100.0 38 ..................................... GAGTTAGCCGACTTCTTTAATGTGTCTGTTGATTATTT 5241 37 100.0 37 ..................................... TGAGTTAGATCTGACTGAATACTTTACTGGAACAGGT 5315 37 100.0 36 ..................................... TAAAGGTAACTGGCAGGTCTTTCCGACTTATGAACG 5388 37 100.0 35 ..................................... TGAACTTATAGGCAGAACCTCGGCAGAAGTAGAAG 5460 37 100.0 35 ..................................... TTAATGTTCTCCTTACACCATTTCACCTTATCTTT 5532 37 100.0 37 ..................................... CAATAGATGAGAGTGTATCTTATTCTACTGGTGATAC 5606 37 100.0 37 ..................................... AAGATGCAGCAGATTTAATCGCCTTATTGTATAGAGA 5680 37 100.0 36 ..................................... TAGAGATGGATAATGCAGAGAATCTGGATAGAATGT 5753 37 100.0 39 ..................................... TCAATCAACTCTGTAAGGACGCCATCGCCATATCCTAGT 5829 37 100.0 36 ..................................... AAGAATACGAAAGGGTGAATAATATATGCAAGTAGA 5902 37 100.0 37 ..................................... CAAGACCGGCACGGTTCTAATCCGACACGGATGAAAG 5976 37 100.0 37 ..................................... TCAGAGGAGGATATAAAGTCGCTAGAAAAGGTTGGAA 6050 37 100.0 37 ..................................... CTGGTCGCTGGGGTCAAGATGGAGAGTTGACATATAC 6124 37 100.0 38 ..................................... TCCCCTTACAAATAGGGCTTATAAACATTGTAGTGGTG 6199 37 100.0 37 ..................................... AGAGAAAGGAGGGGTAGAGATGGGGTTATTCAGGAAC 6273 37 100.0 38 ..................................... TTTTTATCTTTTTCTCGTTTGCCGCAACAATAATAAAA 6348 37 100.0 37 ..................................... CAAAAATATAATTGAAAAACAATCAGAAATAGCTAAA 6422 37 100.0 34 ..................................... TTCTATCTAGTTCTTTTGAGCCTTTGCAGGTATT 6493 37 100.0 36 ..................................... GAAATCATCCACTGCTTGTCTAGGGGCTCCAACTAT 6566 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 39 37 100.0 37 CTTTCAGTCTCCTAGTTAATGGAGTATAGTTTGTAAC # Left flank : GAGAAAAGCTCTGTACCCAAGCTGAAGGTGAGAGGTTGGTATCTTTTACCAATACTGCTGATCCGTTGTTTATGATTGGAGCGGTGGCAAAGGTAACAATATGATATAAAAAAACAATTTGAACAAGATGACCTTTTTAAAGATTATCTCATATATTAAATATCGTATCTTTAATATTTTCTACTTCTTTTTCATTCAAGTTAGTTATTTTAACTATAACTTCTACTTTGATTCTATTTTTTGTATTTTCATTAATATTTCTTTTCTAACTTTCTTTATACCTTACTTGGTCCATACCTTTTCTTTCGGCTTTCTTTAATACCATCTTCTCATCTCTTAACCATTCTAACTTAACCCAGTTTCATAAGTTCTCTCTTTTTTTGGTTAAGCTTATTGTAACTAATACTTTAATTGTTTTTTTTGAATGCTTTTAACCTCAACTAATAGAGTGGGGTTTGTAATATTATTCGTTCTTGCATAAGACCAAAAGTTAAGACTAT # Right flank : CCGCAAATTTTAAAAAGTAAGAAGCCTATTGTATCAAGGGTTTATAGCACCTATGATATTACAAATTGCTCACAATTTTTCGCAAAGCAATTCTTGCAGAAAAAGCCTAGGGTTTTGCGAAAGCACCTTCAACCCTTTATACTACTAGACTTTTAAGCACTTTAAGATTATTCCTTCTTTTCAATGTACAAATACAAAGTGTTATTTATAATAGGTTTGCGAAATCCTACTCTTATTATTTTCTATACTAAACAAATAATTCCTTTATAAAAAGTAAATTTTAACCTTTTATTATCTTATAATTCCCCAATCCAAAAACTGTATTCTTGCCAATATGAGTGTACTGTCCCAATATTAGATATGGTAAAAACTCTGCCAGTTCTCCTTGATATTCTAGTTCTCCTATTACTCCATACATCTTTATTCTTTGTTTTTGTTTATTTGAATATCGCTCCCAATCTTCCCACTTAGTATGATCTTTGACTAATTTAATACCCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTCTCCTAGTTAATGGAGTATAGTTTGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 23838-21220 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDZ01000036.1 Orenia metallireducens strain MSL47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 23837 37 100.0 35 ..................................... CAATACAACAAAAACGGCATATATAGCAATCTGAA 23765 37 100.0 39 ..................................... CGAGATCCTTAGCCAAAATTCAGTTAACAGAAGCATTGA 23689 37 100.0 35 ..................................... AAAATTAATTTTATTTTTGTATTAAAAAAAGACAC 23617 37 100.0 37 ..................................... ATAATTAGGAGAACTGAGGGAGCAGGGCTTAAATGCC 23543 37 100.0 37 ..................................... CTCCTTTTTCCTCTTGAATATCTCGTGGATTCTGTGA 23469 37 100.0 35 ..................................... ACTATATTTGAGTACTGGTGTAACAGATAGACTTG 23397 37 100.0 37 ..................................... TTTTGCATAAGTGCTTGGGCTGGGTAATAATGATGAA 23323 37 100.0 37 ..................................... ACTGTTGGTTATTGCCACCTTGTCCGTTGTTATCTCT 23249 37 100.0 37 ..................................... TCTTAAAAGAGTAGCAGGAACGAGCCAAACCTGCTTA 23175 37 100.0 35 ..................................... TTTACCAAACGTATCGGCTACAAATTTACTGCTAA 23103 37 100.0 37 ..................................... TAATTTCATTTCAATTTCTCCCCTTTTATTTTTGTTA 23029 37 100.0 36 ..................................... CACAAAACTCGAACAGAATAAGAAAGGATGATATAG 22956 37 100.0 38 ..................................... CAATCATCATATTCAACTATATTTCCCTCGTATATTTC 22881 37 100.0 37 ..................................... CCTCTTAAACTCATAGGTGGATGGATTAGCTATTAGA 22807 37 100.0 36 ..................................... CATTAATCATCCCTCCTTATGATCTATTAGCAGTTA 22734 37 100.0 38 ..................................... GTCATAGTACCTGTAGTCAACACATTGTCGCCCATTTG 22659 37 100.0 35 ..................................... TTATGCTATAGCCATAATTCTCTGCTATTTCCTCG 22587 37 100.0 35 ..................................... CTTTACTTTGTGAATATAAATTATTCAAAGTTAGA 22515 37 100.0 36 ..................................... TTTTATCACTCTCCTGTAAGTTTATTTGCTGATTTA 22442 37 100.0 36 ..................................... CCTTTTGTACTGGTTCTCATACTCCATCCTTCTGCA 22369 37 100.0 35 ..................................... TCTGCTCTATCCTCGGGGCAAGCCTACGAGGTTTG 22297 37 100.0 37 ..................................... CTTATGGTAGTTTTAAATCTAGCGTGTCGCCACCGTT 22223 37 100.0 35 ..................................... TTTCGTGAACCTTAGCTAATTTCTTTTTAGCTTTA 22151 37 100.0 39 ..................................... CCTTGTAAACGAGGGTAGAATCAACTACCCTCCTATATT 22075 37 100.0 38 ..................................... AAATCTAGTCTCTACCTCTAAATACCCATGCAACTCTC 22000 37 100.0 38 ..................................... GTACATCACAGATAGATACAGAAGCAGAAATGTTAGCC 21925 37 100.0 37 ..................................... TCCAGTTCCTCATTTTTAATTATTAGTTCTTTCTTAA 21851 37 100.0 37 ..................................... AGATTTCAGTTCGATATGGCTATCCAGCAATCGAAGT 21777 37 100.0 37 ..................................... CCATCATAACCCATAGGTATGTCTATTAAGCTACATA 21703 37 100.0 38 ..................................... CCATTCTAGCAATTCATCCTTTAGCCTAATCCCTTTTA 21628 37 100.0 36 ..................................... ATCTTCAGGAAAGGCTTCGTCAGGTAAAGTTGGTAA 21555 37 100.0 38 ..................................... CTATTCTCTGCATTACTTCTAATGTCTTAGATTGATAA 21480 37 100.0 38 ..................................... TGCCCCGACCATGGAATCCCCTTGAGCTTTTAGGTAGA 21405 37 100.0 37 ..................................... AGTATATGATAATGCTCCAAGCTTGATTAATCTCATA 21331 37 100.0 38 ..................................... AATTGCAAGTATTATAGAGAAATAGAAAGAAAATGTAC 21256 37 86.5 0 ..............................T..TGTT | ========== ====== ====== ====== ===================================== ======================================= ================== 36 37 99.6 37 ATTACAAACTATACTCCATTAACTAGGAGACTGAAAG # Left flank : GTTAGTTTTTAGCTTATGTTTATAATACGAAACTGTTGGGATAATACTTTAATAGAAAGATTTTTGGATACATTAAAAACTGAGTTAATCTATCATAAAGTTTATCCAATTAGAATAAGTAAGGCGAGATATATTTGGACATATTAAAGCTTTTTATAACAGATTTAGAAGGCATATAACTTTAAATTATAACAATCAAGAAAAGTACCAAAACGAGAGAAAAACACTAAACTATATATTTAATTTAATGGGGAAATCTCAATTCCATCTCAGATCTTTTGATATAGAATTTTATAGTTTAGATTTTTTAAAGGAAAAAATTCATCAGTATAGAATTAATACATACATATTAGCTCCATATTTATTTTTAGTCCATATGTTTCGAAAACCACTAGTGTTTTTTCGCAAGAATTGGTTTGCGAAAGATTCCAAGCAATTTATGAAGGCTTAGGTGATATAAACCCTTGATATAATAGGATTCTTACCATTGGAAATTTGCG # Right flank : AATAAATGCTATGAGATATAGATATAACTGATTAGAGTTAATTATCTGTTTGATACAGATGATTAGCTCTGTTTTTTTATCTAAATCAAACTTTCTCATTTTCATTCCCACCCTGTTGGGAATCTACTGTGTTATACTAGATTCAGATTCTTAAGGGAGGTGCTAAATTGGATAAAGAAGCTTTAGTAGTTGATGATTATGGAGTGTTTATTGGCAAGAAGGGTGAAAGGGTTGTTTTAAAGAAAAATAAGAAGATATTTAAGGAAGTACCCTTTTTTAAAGTAAAAGGGATATTGGTTAGTAGTTCAGGCGTATCTTTATCATCAGATGTGATAAAAGAATGTGCTAAAACAGGAATACAGATCCATTTACTTACGTATACAGGTAAACATTTAGCTCAAATTTCTTCATCTGCTATGACAGGAACTGTTAAGACACGTCGAGAACAATTACTTGCTTATAGTGACAAGCGCGGAATAGAACTTGCTATTGCTTTTGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAAACTATACTCCATTAACTAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3231-1245 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBDZ01000028.1 Orenia metallireducens strain MSL47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 3230 37 100.0 37 ..................................... AGTGCCACAATTGGTGACCCGAGGGAGCTATTAACTC 3156 37 100.0 38 ..................................... TATAATCATCGAATACATTGAATATCAACTCTGCTATG 3081 37 100.0 36 ..................................... AAGTCTATGTCATAATCAACCCTACACTTAACCTTA 3008 37 100.0 35 ..................................... CGAAATCTATAGTTTTGTATATTTTCTCTAATGCC 2936 37 100.0 36 ..................................... TGTAATCTATCTAAGTCCTAAGTCTAATTTACCTTG 2863 37 100.0 36 ..................................... TTATGAAACTTTTTACTCATCTATATCATGTTCTTT 2790 37 100.0 39 ..................................... AAAATGTGACCTTTGACCGCTATATGAAATTGATTAAAC 2714 37 100.0 35 ..................................... TAGAAACTATCAGAAATAAAATCACAGGTACTTAT 2642 37 100.0 35 ..................................... GTTACTAATACTTGACTAACATTGACTGACATATA 2570 37 100.0 36 ..................................... GAAAAATCGAAACTCAATATAGATGAATCAGCAATA 2497 37 100.0 36 ..................................... TCTTCTTTTTAGTCTAAGGTTTCTAATTTGCTTAGT 2424 37 100.0 38 ..................................... TATTTCGGTTTCTTTAAACTCATATTCTTGCCTTTCTT 2349 37 100.0 41 ..................................... CCTCGGAGAATAAATCTATATTAGCCACCTTCATACTTTCT 2271 37 100.0 35 ..................................... TATGTTGTTTTATCATTATTAAGAGCTTTTTTAAA 2199 37 100.0 55 ..................................... TAGCACCACACCTAATTGATTATAAATATATTATACATCTTTATAAACTTAAAGT 2107 37 100.0 36 ..................................... TAGCACCACACCTAATTGATTTTGTAAAAGGGAGGT 2034 37 100.0 38 ..................................... ATTGGCAGGATTATCACTTGCTTATCGCCTTATGTATG 1959 37 100.0 41 ..................................... TAAAGATGGTGGTTGGTTCTATGTTACTCACGAGAGGATGA 1881 37 100.0 39 ..................................... GTGGGATATATATAATAACAAGAAAACTAAAGACCAAGA 1805 37 100.0 35 ..................................... ACCAGCCAAAAGACTTTAAGATGGATTTAAACTTC 1733 37 100.0 41 ..................................... TGGAGACAATATGCTAGTGCTATGATTTTGAAAGTAAGCGA 1655 37 100.0 39 ..................................... CAGCTGGATTAAAGAATCTTGAATCTGTATCTTATAGGG 1579 37 100.0 37 ..................................... AAGACTTGCGGTGTAAGATAACGACACCGTCAACCGA 1505 37 100.0 38 ..................................... AAAATAGGGTACGATGAAGAATCCAAAACATTGGCAAT 1430 37 100.0 37 ..................................... CGGACACTGTGTCCTGTGTTATGTTGTTTTTTTATAA 1356 37 100.0 38 ..................................... TTAATACTCTTGGGCAATTGGAAGATAAACTTAATAAA 1281 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================================= ================== 27 37 99.9 38 GTTTAGATAATCATAATTCCGAGTACGGAATTGAAAC # Left flank : TAACATTTCCCGTTATAAGTTGGAATCAGCGATGGAACAGTTTAAGGATTATCCAATTAAAGGGTTTAGAGGATATTGTGAATATGAATTGGAGGCAATTTTGAGCGATAAAAAGGTTAAAGAAATAAATTTATTGAGTGACTTTGCTTTTTATAGTGGGGTAGGTTATAAAACAACTATGGGATTAGGACAGGTGGCTAGAATAAGATAATAATAAAAAATAATTAAAAATTGATATAAATTGTTAGATTTGATTGATGATAGAAGGGGAAGATGTTATACTGAAGATGTAGCTTGTCTGATAGATAGCTTCGAGAACCTTAGTAAGTGCTAAAAACCTAGGGGAGCCTCGAAAGACCAATGAAGCTGGGGAGTTATAGGATTTGTAGTTAGAATTATTGATGGACAAATACCAGTTTTAGTCAATTTTTAAGCTGAAATTGTAGTTGCTCGAAAATAATGGTTTGAATCCTATAGGTATAGGAAATACTAGGGGTAGT # Right flank : ATTAAATACACTCTCCATACCAGGTATTCTATCAGGTTTAGATAATCATAATTAAGATAAACTTCAAGCAACCTTTTGGTTGCTTTTTTATTTTCTATTAAAAATACACTTGAAAATATCTACTCCTTATCTAAATCCCCCTTCTTCATATATCGATAATAACTACTCTTACTAATCTCAAAATAATCCATTATATCCTTCACACTCATCCCTGCTTCTCTCATCTGCTTCATCTTCTCAACGTCTTTATCTGTTAACTTAAACTTCGGTCCTAGCTTGACCCCTCTTTTCTTAGCAGCTTCTAATCCCGCTAAGGTTCTTTCTCGATTGAGTTCCCGTTCATACTCTGCAAAAGCAGCAATAATGGAGTACATCAGCTTACCTTGAGCTGTAGTAGTATCGACTACTAGGGGACCAGTTAAAATTTTTAGATCAACTCCTCTGTCCATCAACTCTTCTAAAATGGTGACTAACTCTTTAACTGACCTGCCGATCCGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATAATCATAATTCCGAGTACGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //