Array 1 3333-3761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJB010000024.1 [Clostridium] hylemonae strain SL.3.14 DKJJKJLN_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3333 32 100.0 34 ................................ TGATACTTCCATCTGGCCAGGCATATAGATCTAT 3399 32 100.0 34 ................................ ATTAAGTTGCGAGGATGCGCACCCGTCCGATTTT 3465 32 96.9 33 ....................A........... ACGGTAAATGGTCGTCAGGCTTTTTGCTTGGAA 3530 32 96.9 34 ................A............... GTTTTCCTCAATATGGAGGAGATCACCACTCTTC 3596 32 96.9 34 .............A.................. GGATATTTGGATTGCATCCTCTGAAATCTATTCG 3662 32 93.8 36 .................G...A.......... TCACAAATGGCTTGGTTTGTACTGACAGAGTTTGCC 3730 32 87.5 0 ................A....A.....T...A | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.0 34 GTCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Left flank : CAGCCAAGAATGCATAGTCAATAGAATAAAAATCATATTGAAAGCCGTCAGTTCTTTTTATTAAGGAGCTGGCGGCTTTTTTGTGGCAAAAATAATTAACTGTTCATTCTGTAATAATGATATAATTAAGTAAATATCATTCAGAATTATGAAGGGGAGGGCTGTCTGCTTCAATGTATCTGATGAAGACCTGCAGTGCTTCATAGGTATAATGAGCGTGACCGGGATTGAAGGTGCTATGCTGTCTGGGTAATAAGTATTAAGACAGAGGCATAACGTGTATGGGCTGATAGATGAGAGAAGTGCTGTATATGAGATTCCGAGTCTGTAGTGCGAATGTGAAGTGAACATAAAATTCCCAGGAGATTCGCACCAAAAAAGTTGCACAAAACAAACAGGCGTATTAGACTATAAGATAAATATGATTATATATCTAAAGAAATTCGTAGTGTAGTACAAAAAGCTTTGTCTTTTTGTGCTGGGATTTGGATATATTTGCT # Right flank : ACTTTTAGCAGTCAACCACGCGTTAATGAATGACTGTTGTTCTCCTTGTGGGTGTCTGCGTCTCATTGTAGATGAAGATCCACGGCCCCCGGTGACAGTGACCGGCAAGGCGGAGGAGCAGGTGATCCGTTATGAGGAACTACAGAAAATGGAGGGATAACAGGACATATGATAAGTGTATGTGCTCTCCATCCGTAAGGGTGGAGAGCTTTTTTCTGCCAGCATTTTGGGAGGCTGTTTTATAAAAAATAAAGAAATTATTAGGATTTCCTAAAGAAGCGGGAATAAAGAGTGCAATTTTTCAGAAGTCTGCTATAATGTTCAGTAGGCTGTGATAAAGGAGAAATGGAATGGGAACCAGATGCAGAATAAAAAAGCCAATACTGCCTAAATATGCCATATTTCCGCTGCTTGCCTGTGTGACGGTAAACTTTATGGCATACAACGGGACAGAAGTGCTGACCAAGTCGTGGAAACACTATGACCTGACACTTCCTTTT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 1 532514-532946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJB010000001.1 [Clostridium] hylemonae strain SL.3.14 DKJJKJLN_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 532514 33 100.0 34 ................................. TACCGATGGTGAAAGCCAGGCGCTGATCTGCGCA 532581 33 100.0 34 ................................. AGCCCTGGTGATCGCTGTATAGAGGATGTTGCGC 532648 33 100.0 34 ................................. GGGTCTGCCTCCGCCTCATATCGTAAGGCACTTA 532715 33 100.0 33 ................................. ATACATGGTCCCTGTATGCTTGTCTCTATGTAT 532781 33 100.0 34 ................................. TTAACGATGGGTGTCAAATGGTAGAAGACACCCT 532848 33 100.0 33 ................................. ATAATCAGCATACATACTCTTCGCCTCCTTTTA 532914 33 97.0 0 ...............................T. | ========== ====== ====== ====== ================================= ================================== ================== 7 33 99.6 34 GTCTCTACCCATTTGGGTAGAGTGGATTGAAGC # Left flank : GAAAGCGGCGATTAAGAAAAGTTGCAAAGCAATGTGTAAATTATGGACAGCGGGTGCAGAATTCCGTATTCGAGTGTAATCTTGATGCGGCGAAATATCGGCAGGTAAAGGCAATTCTTGAGGATATTGTCGATAAAAGTAAAGACAGCCTCCGATTTTATAATCTGGGAGATAAATATAAAAACAAGGTTGAACATATCGGGGCAAAGAAAAGCTTCGATGTGACAGATACTTTGATTTTTTAACTTATCAGGGAGTAAAACTTTTTGACCGCGTATAGGCATAAGTTGTGTGGCTGGCGGTGTAAAATCTGATGAGAGAGTAATTACGGTGCGAAACATATGTGAACATAAAAATGCCGGGAGATTCGCACCGAAATGTATTAGATATTTTGTTTAAAAAAATGAAAATGTAATAGAAAATATTATTTTACTACCAAATAGTATGCAATTGTGACAAGTATTCGGATAGTATGTTGAGGAATAATGTGCATAATTGCT # Right flank : CGCTCTAGCTAGAGCTAGTTGAGGCTTGCCCATTGTCTCTTCCCATTTTTGTATGTGGCATTTTACGGGCCGAAAGATTCTATCTGACCTGGGGATAAACTGATATGGGCAGGGTGATCAACGGGTTAGCTGCTATCGTTCAGTACAACTTCAAACTGGATTTTTTTCAAATAACCTGTCTCTTTTCTGCGGACGTAAATATAACCGTTTAAAAGTATTTGATTGGAAAGGGAACCGTTTTCCTCTGTAGTCGGGCTGCTGAAAGAAAAACTGCTGGAACAGAAATCCCCTCATGTTGATGAAACACCTGTCCAGGTGCTTTTTGAGGAGGGAAGAAGAAAAGCTCCGGTCTGATGAATTATCTTTGGGATGGTAACTGCTCCATTCCAAACAATCTTGCAGAAAACGGTATCCGTCCATTTACCATAGGTCGTAAAAACTGGCAAATCAACCATTCAAAAAATGTGTCGTCCCCATACCTTTCAACAATAACAGAAGGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACCCATTTGGGTAGAGTGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 688899-689470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCJB010000001.1 [Clostridium] hylemonae strain SL.3.14 DKJJKJLN_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================== ================== 688899 33 97.0 33 .................A............... ATCACTGTCCTTGGCTTTCTGGTAGCGGCATCC 688965 33 100.0 35 ................................. GCCTTAGTTTCTATAGTCTTTAATAAACTGGCCGC 689033 33 100.0 36 ................................. ATAGATGCTTCTGCCGCAAAGTGGGCAAGGTTCTAT 689102 33 100.0 35 ................................. GTATCAGAATTACATGACATCAATGGCTCAGGCGG 689170 33 97.0 35 .....................T........... ATGAAGTAAAATTAGACGGTATTCGATGTGTAGCA 689238 33 93.9 36 ................GA............... CTCGCAATCTTCAAGGAGCGTATCCAGTCCGGCCTT 689307 33 90.9 98 .....T...........A....C.......... TGGAACACCTGCAGTCTTGCTCCAAGACCGATGAGTTTCCCTCCACATGGAAGGAATTGAAACCATCTGCCGACAGCCTTTGTCTCTGAGCTCCAGCA 689438 33 72.7 0 .C..T......T.C...A.A.C.....C....C | ========== ====== ====== ====== ================================= ================================================================================================== ================== 8 33 93.9 44 GTCTCCTTCCGCATGGAGGGAGTGGATTGAAAT # Left flank : AGAGAAGACTGTCCACGAGATCGGGCGGAAACATAATGTGACCGTTGCCACGTCAGATGCACTGGAGCAGGTGATTATCCTTGGGCAGGGCGGAAGAAGGCTGTCTGCGGAAGGACTTCGGGAAGAGGTAGAACTGGTGATGCAGGAGCTGAGAAGCGAGCATCTTAAGGAGAGCAGAAGTACCCGAAGCTACCTTTTTGATAATCTGCCGGACGAACTGGCGGACTATGTGGAAGAGCTGCGGATGGGGGAAGACTCTTCTGATTAACGGGTATGGGTCTGCTGAACAGGGGGAAGGGTTAAGTGTTGTGTAAGTCTCTTTTACTTTAGTGCGAATGTGAAGTGAACATATAATTGCCGGGGGATCCACACCAGAGAACAGGCTGTTTTGTCAGCAGCGAGGCCTGAAAGATGTGAATTGTGCTGTTATTAATTTGTGAAATTGTGCAGTCTGTATAGATGTAATTGGGGTTTTAAGTTATAATATGTATAGAATTGCT # Right flank : CAGCCGTCAGGAGGCAGATGTTTATTTTAATGCTCAGGTGGTTAAGAATAGAAGGCTGCCGGGGAATAAGTCTGAGAACAAAAGTCTTATTCCTTCGGCAGCCTTTACATATTATCTTATTTTGCAGCCTTGTCGGCAAAGTCGGTCGTTACGAGGTCGTCATATGGCGCCCGCTTATCAAGCTCATTGGCGTCTTCCAGTATATCCTGAAGAAGCTCAAAGCTTTTCTTTTCAAATACGAGATTGTCTTTCCATGTGTCCTGGTCATAGTATCTTGTCACGATAGTAGTGATAGTGTCCAGGTCTGTCTCTTTAAACTGAGGGGCGATGATGGAAGCAATTTCTTCAGGGGTGTGGGACTGTACGTAGTCCATACCTTTCTGCAGTGCATTCGTGAAGCCCTGGATGATTTCCGGATTTTTGTCGATGTAGCTCTTCTTTGCGGAGAAAGCGGTGTACGGAACATAGCCGCTGTCGGTTCCGAGGGAAGCTACGACATA # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:-0.82, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTCCGCATGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //