Array 1 437-663 **** Predicted by CRISPRDetect 2.4 *** >NC_001880.1 Aquifex aeolicus VF5 plasmid ece1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 437 29 100.0 36 ............................. CTCAATAGCTTCTACTCCTTCAGGCACAGCTTCTTT 502 29 100.0 38 ............................. CAAAGAAGTCCTTTATCTTAGAAACCTTCTTTTTGGAC 569 29 100.0 37 ............................. GGGAGTTCTAAAGAAGAGGTAATCGGGTATCTTTTCG 635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 CTTTCTATCCCATATATGGGAACTAAAAC # Left flank : TTTATATCGCTTTCCGGCAAAAGGTTTTTATTCTTTCCGAGAGTCATGCGAAATCCACTTCCCATAACCAGTTCAAAGTCGTCCCAGTTTTTAGCTCCTCTCTCTAAAACGTCTACATACATCGTATATGCGTTTAGCGCTTCTCTTAAGTTCCTCGCTTGGACTTCCGCCGTAAGGCTCATACCCGAGTTTCTCCCTGTAGAACTCTAATCTATCCTTGAACCAGTCCTTTTCAACTCTAAAAGACGTTATTATCCCGCCTCTACCCAATATCACACACCACGAGAGATCTTCGAGATAGTAAACCCTCGTCCAGCTTTTTTCACTTTTTGGCTTCATGATTATGACCCTTGAGCTTTGTGCTAACGCTTTAAAGGTTTTGAGTAGGTAATCAAGCTCGTCAATTATCTGCTTGTATTTAAGCCTTGTCAATAAGC # Right flank : CCCGTTAATACCCTATTGGCTTTCAAGTAATATCTTAACAAACTTTTCAAATTGATAAGCCTCCCTTTTAGCACCCGCGTTCACCTGCACCGGAGAGCCAGGGGCACACCACCTGCTAAAGCATAATATCATCAATTTTTAGAAATCCTTAACAAAAGGTTGTTTAAAGGAACCTAAAGCCCTGTTTTTCTGTACCTTAGCTGTTTGACACATTAAAAACCACGTATAATCTTATACATATGAAAGTTCGCAAAAACATAACCCTTTCAAAAAAAGCTGAAGAATACCTCAGGATGCTTGCAAGAGAAAAGAAGAAATCCCAGAGCGAGGTTATAGAAGAGTTGATAGAAAAGGAAGCAAAAGAGTATGAAAAGAAAAAGAGACTTGAGGCGTTTGAAAGGCTTGTAAAAAATGCAAAATATTACAGCGGCAAGATAGGGAATAAAACTATTCAACAAATAAAAGAGGAAATGGGAAGTGAACTCTGAAAAAGTCTTCGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATCCCATATATGGGAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 156460-156766 **** Predicted by CRISPRDetect 2.4 *** >NC_000918.1 Aquifex aeolicus VF5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 156460 30 100.0 36 .............................. CAGTCAGATTGAAGTTATCGTCAACTTCAAAATACG 156526 30 100.0 44 .............................. TTGCTTTATCAGAGAATAGTATTCTTTCTATGTCTTCATAGTTT 156600 30 100.0 41 .............................. TCTTGATAGTATCTGTTTTCCGCGTATTCCACGATTCTTTT 156671 30 96.7 36 .............................T TCGGTGATAAAGGAGCATTTTTCACAAAAGAAATCA A [156687] 156738 29 80.0 0 ...T.................-.AA...TG | ========== ====== ====== ====== ============================== ============================================ ================== 5 30 95.3 40 GTTCCTAATGTACCGTGTGGAGTTGAAACC # Left flank : TATCTTCAGAGTTTCTTCGGGAAGAGGATCTCCCGTTTTGTCTATCGCCTCACCGCCTATTAGCCCCTCTCTATACTCAAACTCAACGCCGTAAATCTCACCTATTTTGTCAAGAACTCTGAGGGCTTGTTCCACTATTTCTGGACCTATCCCGTCTCCTTTGAGTACTGCTATCTTGTATTTTTTCATATGATGTATTTTAGCAATAAAAACTTAGACGAATTTATTATAATTATGTTTAAGGGCTACAAAGCCCCTCCTGGCTCCTTGGCAATTGAATATGGTTTATGGGTCTCAATGAGTGATGCTTTGATGACGTGATGAAATGAAATCATGATGCAATAGGGCTGAAGGGATTGAAAATCAAGGGTAAAAATTTTATAAAGGTATACTCAAGTTTGCAGAACCTCAGGTTAGCGGAAATTAACGTTCGTTTCGTGAGGGTCAGAAGTTTAATAAGTTATTGATAAAGCGTTATTTTTTAGACACAGGCGTGCAGG # Right flank : GATTATTTGTGTTTAAAATTCTTTAGAAATGCTTACCGTGGGTATCCTCGGAGGTGGACAGCTCGGATGGATGACTATACTGGAAGGGAGAAAACTCGGGTTTAAATTTCACGTCCTTGAAGACAAAGAAAACGCTCCTGCCTGCAGGGTTGCTGACAGGTGTTTCAGAACAGGACAAATAAGTGAATTCGTAGACTCCTGTGACATTATTACTTACGAATTTGAACACATTAAAGATGAAGTTTTGGAAAAGTGCGAGAGTAAATTAATTCCCAACCCTCAAGCTCTTTACGTTAAAAAAAGCAGAATCAGGGAAAAGCTTTTTCTGAAAAAGCACGGTTTTCCCGTGCCGGAGTTTTTAGTAATCAAAAGGGACGAGATAATAGATGCTTTAAAGAGTTTTAAACTTCCTGTGGTGATAAAGGCGGAAAAGCTTGGCTACGACGGAAAAGGACAGTACAGGATAAAAAAACTCGAGGATGCAAACCAGGTTGTCAAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATGTACCGTGTGGAGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 244561-244791 **** Predicted by CRISPRDetect 2.4 *** >NC_000918.1 Aquifex aeolicus VF5, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 244561 29 100.0 39 ............................. ATGACATTTCAGGAGGTGGAGCATGATTACTATCTTTTC 244629 29 100.0 40 ............................. AGTATAAGCTTTCTAAGCCTTGAAAGGAAAAGCTCCTCGC 244698 29 100.0 36 ............................. TCTCTACCTTCCTTTCAACCTGTATTGCTATGTCCG 244763 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 100.0 39 GTTTCAACTCCACACGGTACATTAGGAAC # Left flank : CAGTACGATAAGTACGTTTTTATGAACTTATCTTCCAGGGCACTGACTTCCGAAGATTTTCTCAAGAATATATTAAGAATTGTTGAAAATTCCGGTTTTGATCCTGCAAAGATTGTTTTTGAATTGACGGAAAGAGAGAGTGTTAAGAATATAGACTTGGTAAAGCGTTTCTTGGAGGAACTGAAAGAAGTTGGTATTAAATTCGCTATAGACGATTTCGGTTCCGGATACTCCTCGTTCCACTACCTTAAGAAAATTCCCGTAGACTTTGTAAAAATTGAGGGAGAATTCGTCAAAGGCGCCTTAACTGACTGGAGGGATAAAACTTTTATAGAGTCGATAGTTACGTTGGCGAAGGGTATGCACATAAGGACAGTAGCTGAGTTTATCGAAAACGAAGAAATAAAAGAAATTATGAAAGAGATAGGTGTAGATTATGGGCAAGGATACTACTTCGGTAAGCCTTCTCCCAAACCGTGGGTATAAAGGACAGAACTTGA # Right flank : CCCTGCGTGCCTATGTCTAAAAAATAACGCTTTATCAACAACTTATTAGACACCCGACCTTCACGAAATGAATGTTAATTTCCGCTAACCCGAGGTTCTGCAAAGTTGAGTATGCCTTTATAAAATTTACACCCTTGATTTTCAAACCATTTAACTATGTCGTATCACGATTTCATTTCATCACGCTATCAAAGCATCACTCATTAAGACCAATCTACCCTATTCACTTGCCAAGGAGCCTGAGAGTGCTCCAAGGAGCTCTTTTAAGATTATATCACATTATCGGTCGGGTCGGGAGTATCTGTAAGGATTTCTCTTTTGTACTGGGTTTTGTCGTCGAATACGTAAATTATTACCGAATCCTTCGTTTTGTGGATTATGTCGCTGAGTTCTGCTTTTAATCTTTCAAGTCTTGAGAGGGTAATTTCTCCCTCAAAAACGGATTTTTGAACGTGGTGTATGTATCTTTTTGCTATTTTTCTTACTTTGTTTAGCCTCTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCCACACGGTACATTAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 279264-279555 **** Predicted by CRISPRDetect 2.4 *** >NC_000918.1 Aquifex aeolicus VF5, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 279264 29 100.0 36 ............................. CATCTGCAACATATTCAAGTTCAGCTTCAAAACCTT 279329 29 100.0 36 ............................. TTCGTCAAGCTTTACCTCAAAAGTCCTCTCAAACCT 279394 29 100.0 38 ............................. AATAATCAACAACTCTTTGATTTTGTGAAATGGAAGAA 279461 29 100.0 37 ............................. AGAACTCTCAGAAGAACCGAGAGCTTTTTCTATTAAC 279527 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 100.0 37 GTTTTAACTCCACACGGTACATTAGAAAC # Left flank : GTTCAGAAATGTCAGGCAGTTCTCTTGCCTTCTGAACGAGCTTTTTTGGGTCTTTTTCCACCGTTGAGATAACACCTTTCATACTCCCCTTTTCCCTTATCTTTTTAACAAGTGCCCTCGTGTCTATCCCGTATATTCCGACTACGTTGTTTTCCTTCAGGTATTCGTCTAAGCTCTTTTTTGCCCTCCAGTTTGAGTACCTGAAGAAGGCTTCCTTTACTACAAATCCGTTCACCTGAACGCTTTTGCTCTCAATATCTTCATCGTTCACGCCGTAGTTTCCTATCTGAGTGTAGGTCATTACGACTATCTGTCCCTTGTAGGAAGGGTCTGTGAGGATTTCCTGATATCCCGTCATGGATGTGTTGAATACGAGTTCTCCGCCTGTTTCTCCTTCAGCCCCAAAGGAATAACCGACAAAGTAAGAACCGTCCTCAAGCGCCAAAATGGCAGTTTTCCGCATATTAGAGTTTTTATTTTAATTTCTTTTTACAATCTGC # Right flank : CCCTGCGTGCCTGTGTCTAAAAAATAACGTTTTATCAGCAACTTATTAAACTTCTAACCTTCACGAAATGAATGTTAATTTCCGCTAACCTGAAGTTCTGCAAACTTGAGTATACCTTTATAAAATTTCCATCCTTGATTTTCAATCCCTTTAACCCTATTGCATCATGATTTCATTTCATCACATCATCAAAGCATCACTCACTAAGACCTATCCACCCTTATTCAATTGCCAAGGAGCCCGAAAGCCCTCAGCAGGGCCTTATTTAAACATTATAATCATAAAACATATATGGTCTGTCCAAAAGTTGTTATTCTTTCCGAAGGTGCGGATCTCGACAGCCTTTCCGCAGCTTACGGAGTCCTGAAACTTTACCCTGACGCATACTTGCTAAAGCCCAAGCACTTGTCCAAAAAAGCGGGGGAAGTTTTTAAGAAGTACAGGGATAAGTTCAGAGTAATAGAAGACCTGCCAGACTGCTTTGAACTCGTGCTCGTGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTCCACACGGTACATTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 1226627-1226860 **** Predicted by CRISPRDetect 2.4 *** >NC_000918.1 Aquifex aeolicus VF5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1226627 30 100.0 37 .............................. CAGAACAATAAGAGAGCCGATTGATGAGAACGCAGAC 1226694 30 100.0 37 .............................. AGATATGATACACCTGAAACATTCTTTTACATGGACC 1226761 30 100.0 41 .............................. CCGGCGGATATAAAAATCGCCTACCTATACGCCGTAATGGC 1226832 29 90.0 0 ................-.T......A.... | ========== ====== ====== ====== ============================== ========================================= ================== 4 30 97.5 39 GTTTCTAATGTACCGTAGAGGAGTTGAAAC # Left flank : GAGAGCTACACTCAAAATCTCCTTAAGGGGATAGGCAAAAGGGTTTTCTCTCAAAAGGAGTAAACCGATAAATGCCAAACTCGTGGCAGTCAAGTTATGAACAAATATCCCGGCTAAAGTGGGCATTTCCCCCTTCATCCCAAGCTTGAAGAATATTGGAGCAGTCCCCCATATAAACGCAGCAAGCAAAGCCCAAAAAACAGCCTTTAAGTTTTCCATTTAATGTATAATACTACCTGAAAGGGCTTCTAGCCCCACCTGGCTCCTTGGCAATTGAATAGGGTAGGTGGGTCCTAATAAGTGATGCTTTGATGATGTGATGAAATGAAATCATGATGCAATAGGGTTAAAGGGATTGAAAATCAAGGATGGAAATTTTATAAAGGTATACTCAAGTTTGCAGAACTTCAGGTTAGCGGAAATTAACATTCATTTCGTGAAGGTATTGTGTCTAATAAGTTGTTGATAAAGCGTTATTTTTTTAGACACAGACACGCAGG # Right flank : CAGTAAAAAATAAAAAAGATTTTGGTTTTACCGTAATTTATTTTTTGTAATTTGAAGCTCCTTCAAATAAGCATACTTTGTGAAATTGAAAAAAGCGTAGGATGCCGAAATAAGGAAGCCCCTCCATCCGTCCAGAAATCCACGCTTCATTATGAAAAACTTAAAAAAAGTCCACACAGGTCTTGTGAAAAGTTCGTAATTTTTTACTATCCTTCCATTTTTGTATAAAATTTCTGCGGAAATCTTTGAATACTTTAAGTTCTTAGAAAAGAACTCGTCTAAATTTTTGAATGAGTAGTGGTATAAATCTCCCTTTAACTTCCCTATACTTCCAGAACACTTTACAACTTCGTGCAATTCTCCTTCGTACTTGACTTTATCCTTTTTAAATACTCTTATTCTCCACTCGGGATAAAGGGTGTGATTTAAAAATTTACCCATAAAGTAAGTTCTTCTGTTTACCACGTAGCAGTCGTGTTTAGGGAATTTTAAAGTTTCCT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTAGAGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 1249189-1249341 **** Predicted by CRISPRDetect 2.4 *** >NC_000918.1 Aquifex aeolicus VF5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ============================================ ================== 1249189 22 100.0 43 ...................... TTGAAAGTTGAAAGAGCTAAAGCAACCGCACCGATGGTTATGA 1249254 22 100.0 44 ...................... TTGAAAGTGGAAAATGCTGCAAAAACAAAAAGGAAAAAGCTGAG 1249320 22 90.9 0 ...C.................T | ========== ====== ====== ====== ====================== ============================================ ================== 3 22 97.0 44 GTTTCTAATGTACCGTGTGGAG # Left flank : ACTTTTCTACGGCCTCTTCTGGATCCACTACGTTCGCCTTTGACTTTGACATCTTTGCACTTTCGCCTATTTCCCTTTCAAGGAACTTTATGAGGTTTTCATCTTTTATCCCAAGTTTTTCTAAAAGGAATATAGCGTTATCGCCTACGGATATCTTGTTTTCCTGAAGGAAGTCTTTTATTTTCATAATTAAAAATTTTATATTGACCCGAAGTTTTTACTTTAGTAAACTTTTAATTGGAGGGCTACAGAGCCCTACTTTGCTCCTTGGCAACTGAATAGGGTAGGTGGGTCCTAATAAGTGATGTTTCGATGGTGTGATGTATTGAAATCATGATGCAACATAGCTAAAAAGATTGAAAATCAAGGATGGAAATTTTATAAAGGTATACTCAAGTTTGCAGAACCTCGGGTTAGCGGAAATTAACATTCGTTTCGTGAAGGTTAGGTGTCTAATAAGTTATTGATAAAGCGTTATTTTTTGGACACAGGCACACAGG # Right flank : TGTATATTCATAAGATCATGAAACTTTCTTACAAAAGAGTTATCCTAACGAGGGAACTTGAGGATATAAAAAAGGATAAACCTCTCTTTGAAAGAGAAGGCTTTAAAGTTTTGGAGCTTCCCTTAATACAAACAAAAGTTCTTGAGTTTAACCTTCCCGATGAAGAATTTGATTACATTGTTTTTCAAAGCAAAAAAGCGGTTAAAATTTTTCTTGGCAAGGTAAATCTTAAAGGAAACAAAAAAATTGTAGCTGTAGGGAAAAAAACGGCGGAGGAATTGGAAAAATTAGGGTATAAAGCGGATTTCATTCCGGAAAATGAAAGTGCAAAGGGCTTGATAGAACTCTTTAAAAGATTACCTAAAGGAAAGGTTCTAATTCCACGTTCTAAAATAGGCAGAACAGAGTTAATAAAGTTTTTAAAGGAAACGAGCTTTGAAGTTTTTGCGTTGGATGTTTACACAACTGAATACGTTTTTTATACAAGAGAAGAACTCCTG # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATGTACCGTGTGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 1379666-1379894 **** Predicted by CRISPRDetect 2.4 *** >NC_000918.1 Aquifex aeolicus VF5, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1379666 30 100.0 37 .............................. TTATTTAGCATTCAAAAAAGGAGTTCTTGTAAATACA 1379733 30 100.0 36 .............................. AAGTGAGGAGATGGGAAAGACATGAGGAAATTCTAC 1379799 30 100.0 36 .............................. TGCTGGATTTCCCTTCCTTATTTTAATGTTCATTAC 1379865 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTTCAACTCCACTACGGTACATTAGGAAC # Left flank : AAGAAAGCACGGCGAAAGAAAGGGCAAAGGCGAGGTAAAGTCTTATAGTGTTAGGAATTAAAAAAGAACCATAAAAGGGAAAGGTAAATAGAAAACTAACAATCCGAAAATAGGAAAGTAAAAGCGTGATTAAAAACTCTTCGGAAGTTACCTTATCCATACGGGAATGTTTGCAAAAATCTCAACTGCAAAGTCAACGAGCTTTCTCATCATCCAGCCGCCGAGGAGAAATATAACGAGAAATGCGGTAATTACCTTGGGGATATAGGAAAGCGTCATTTCCTGAATTTGAGTAGCCGCCTGAAATATACTAACCACAAGCCCAACAACGAAAGTGGAAAGCAATACGGGAAGTGCCAAAAGAAGCGTCATTTCAAGTGCTCTTTGCCCTAAGGAAACTATTAAATCCTGTTCCATATAAAGATTTTTACCATAGCTTCTTCCACACGGTACATTAGGAACAAAGAAAATCCAAGAAATGTCCACGCCCTCCGAAGTCA # Right flank : CCCTGCGTGCCTGTGTCTAAAAAATAACGTACTATCAATAACTTATTAGACACCCGACCCTCACGAAACGAATGTTAATTTCCGCTAACCCAAGGTTCTGCAAGCTTGAGTATACCTTTATAAAATTTTTACCCTTGATTTTCAATCCTTTCAACTTTATCGCATCATGATTTCATTTCATCACACCATCAAAACATCACTTATCAAGACCCACCACCCCTATTCAGTTGCCAAGGAGCCGGCTGGGGCTTTTTAGCCCCTTTTTAAAAGTATATCACATATCTTTAATGTTTAAAGTGTCTTAAACCTGTGAATATCATCGCTATTCCGTGTTCATTGCACGCATCTATTACTTCCTGATCTCTTATAGAACCGCCGGGTTGGATTACCGCAGTTATTCCTTCTTTAGCCATTATGTCTATACTGTCTCTGAACGGGAAGAAAGCTTCCGAGGCTACCACGGCACCTTTGAGGTCAAAACCAAACTCCTTGGCTTTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCCACTACGGTACATTAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 1418900-1419060 **** Predicted by CRISPRDetect 2.4 *** >NC_000918.1 Aquifex aeolicus VF5, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1418900 29 100.0 36 ............................. CATAATAGGAGAATTTAGGAATGCTGATATGCGGGA 1418965 29 100.0 38 ............................. TTGTCGAGAATTACATCGTCAGGAGTTTCTACTTCAAG 1419032 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 GTTCCTAATGTACCGTGTGGAGTTGAAAC # Left flank : CCCTACTTCAAAGAGATATCCCTTTTCTTTCACCGTGTGGATCGTCCCCCCTATCCTGTCGTCCTTTTCGTAAACTACAACGTCCACACCCTCCTTTTTTAACCTGTATGCTGTAGAAAGTCCAGAAATTCCTGCACCTATTACCACAACCTCTCGCATATCCAAATTCTAAAACTTTTCCTTCTAAACAAACCCTGACAAAAGCTTGGAAAAAACTTGAAAATGTTTTAAAATACTAAACAAAGCCCTTTTTGGGCTCCGGCTCCTTGGCAATTGAATATGGTAAGTGAACCTTAATAAGTGATGCTTTGATGGTGTGATGTATTGAAATCATGATGCAACATAGCTAAAAAGATTGAAAATCAAGGGCATAAATTTTTACAATGATATACTCAAGTTTGCAGAACCGCGGGTTAGCGGAAATTAACATTCGTTTCGTGAAGGTTAGGTGTCTAATAAGTTATTGATAAAGCGTTATTTTTTAGGCACAGGCGTGCAGG # Right flank : CAACTTAACAAATCCTTAACATTTACGGAGTACAAAACATAATAAGCAAACTCAGGGAGGTAAAAGGATGAACAGGAAGAAATTTCTTCTTGGGGTACTAGCATTAGCAATTTTTCCCGCCGCAGGAATAGCAAAGGAAAAAGTAATCAACGGTGCTGGAGCAACTTTTCCCGCTCCTCTCTACTGGAAATGGGCTGACGCTTACTACAAGGCAACCGGTATTAAGGTAAACTACCAGTCCATAGGTTCAGGTGGAGGAGTTAGGCAGATAGTAAACAGAACAGTTGACTTTGGAGCATCTGATGCTCCCTTAAAACCTGAGGAAACAAAAAAACACAATCTGGCTCAATTCCCGACTGTGATTGGAGGTGTTACCGTAGCTTATAACTTAAGGGGAGTAGAAAATCTCAAGCTCTCTACAAGAGCGGTTTGTGATATTTTTCTCGGAAAAATTAAGTACTGGGATGACCCAGTTATAAAGAAGGATAATCCCGGAGTAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTAATGTACCGTGTGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //