Array 1 171239-173350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUJ010000127.1 Salmonella enterica subsp. enterica serovar Weltevreden strain FW-H1-Jan NODE_244_length_352254_cov_79.859222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 171239 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171300 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171361 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171422 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171483 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171544 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171605 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171666 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171727 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171788 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171849 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171910 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171971 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172032 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172093 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172154 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172215 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172276 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172337 29 93.1 40 ...........................NN NNNNNNNNCTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172406 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172467 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172528 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172590 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172651 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172712 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172773 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172834 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172896 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172957 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173018 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173079 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173140 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173201 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173262 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173323 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ======================================== ================== 35 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189858-191595 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUJ010000127.1 Salmonella enterica subsp. enterica serovar Weltevreden strain FW-H1-Jan NODE_244_length_352254_cov_79.859222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189858 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189919 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189980 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190041 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190102 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190163 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190224 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190285 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190346 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190407 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190468 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190529 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190590 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190651 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190712 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190773 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 190834 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190895 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190956 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191017 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191078 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191139 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191200 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191261 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191322 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191383 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191444 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191505 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191566 29 93.1 0 A...........T................ | A [191592] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //