Array 1 54730-55358 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PZDZ01000006.1 Staphylococcus agnetis strain SNUC 2493 contig006, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     54730	    36	 100.0	    30	....................................	ATGTATATATCATAATTAGTTATCTTATCA	
     54796	    36	 100.0	    30	....................................	TGGAAAATCGTTTTAGAATGATGAATGAAA	
     54862	    36	 100.0	    30	....................................	AGAAGAAGAGTTTGAGGCAAACCAAGTCGA	
     54928	    36	 100.0	    29	....................................	AGCAACTGATAATGGAGTAATGGTATCTA 	
     54993	    36	 100.0	    30	....................................	ATATTGTTGCAAGAAAACCAGATGGAATAT	
     55059	    36	 100.0	    30	....................................	TTTTTTTACCGCTTCGATTCCAGGGTCTCC	
     55125	    36	 100.0	    30	....................................	ACGATTAGATTATCTGAAAGTAAGAGATGA	
     55191	    36	 100.0	    30	....................................	CCGGGGCTTGCAAGGATTACATCGCCCGTA	
     55257	    36	 100.0	    30	....................................	AGTTTGATAAAGCGGTTAGAGATAAAGACT	
     55323	    36	  80.6	     0	.......................A...TTT.AT..G	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	  98.1	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC	                              	       

# Left flank :   GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTTATCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTGACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGTCCAAAATCTTTGAAAAGATCGCTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGAAAAAGGTCAAAAATAGTCAAGGTCAAAGTGGTGTGATTGGTGTAAATTAAAATTTATTCAAAATACATAAAGATCAGTGATATCAATGGATTAGACAATCTTAAAAGTTATAGTATACTGTAGCTAGAG
# Right flank :  GTGTGCTATACATGAAATATATATGCGATCCACTTATTTTAGGGGTAACCTCATAAAATTGTTTAACTCAATGAAACTAACGTTGTTTAGACAGAAGTTATAACACTCACTCCACAAAAAATATCAGAAAATTCTTGACTCAATTGTTTTATATGGTAAAATAACTTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTTGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGACAATAATGAAGGAAGACGTAGTAAAAGGGGAGGCCGACGTTTAAAAAGAAGACGAATTCATAGACTT

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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