Array 1 47479-47295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQL010000045.1 Nostoc parmelioides FACHB-3921 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 47478 38 97.4 36 G..................................... TCTCGCTTATTCATTGATTACCTATAATTAAATATA 47404 38 100.0 34 ...................................... GCTGAAGCAACCCAATGTGTGGATGCTTGGGGCT 47332 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 99.1 36 TCTTTCAACCCGCCCCAAGCTGTGAGGGGTATTGAAAC # Left flank : TGTGCTGTCGAGGGTTTGCTGATTTCTCTGATTGTTCGATACCTAGTGAGTAGATGATACTTTTTATCAATCCACTCTTTTGCCATTTTGTCAATGCGTAAGTCCTAAAAACTACAAAAGGTGAACTTGATAGATGCTATTCGTCA # Right flank : TCAGCGCCTCAAATCCTTCACTAGCAAAGACTTTCAGAAGCATTTTTGTCAGGTCTGCCAAAATCGCCTGTCTGTGAACACTTAAAAAAGTAAATTAACTGACATGATAAAAGCTACAAGCCTTAACCACTAAGCGATTTGAAAGTTTGGCAGCTTCCCAGGGAAATTGACCCCGCTTCGATTCGCCAAAAAAAATAATTAAGGTGGGTTCCTCCTTGATCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTCCTCAAGGGACAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTTTTCCAACAGTCAAACTAACCCACATTTACACAGTACATTGGCTTTAAACAAAGCATGAACTGCGGCGCTATTAGTTATATCTATTCTATTTTCAAGGTTCTGCTTTTTGTCAATTAGGTTCTTTGGCGAGAATTATAAGCAGTGATCGCCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTCAACCCGCCCCAAGCTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.90,-7.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 8014-7602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQL010000050.1 Nostoc parmelioides FACHB-3921 contig50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 8013 37 89.2 34 .AC.....T...A........................ TCTAATGATTTCAGATTTGATTAAATGTGAAATT G,GT [7997,8001] 7939 37 100.0 43 ..................................... AGCTTTATCAATTGCGCTATTAGCTGTACGAATTGCACCTACT 7859 37 100.0 35 ..................................... TTACGTGGGATAACTCAAAAAATCCCACACTTGAA 7787 37 100.0 39 ..................................... GCCGGCGCGCAGGGTAGCGGCATTCCCATTAACGGTAGA 7711 37 100.0 36 ..................................... AGTGCAACCAGCACAAATCCCAATTTACGCAAAATT 7638 37 75.7 0 ............C....C..A......T...A.TTGT | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 94.1 38 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Left flank : AAACTTTAGGGATTCAGTTGTGTATTGATGACTTTGGTACAGGTTATTCATCTTTAGCTTATTTACACTGTTTCCCCATTGATGTTTTAAAAATTGACCGTTCTTTTACGAAGCGAATTGATAGCGATAGTGAGCAATTGGCAATTATCCGTGCTATTGTCACACTTGCTAATAATTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTAAACCAGTTGGTACAATTACAGTTATTAAAATGTGACCAAGCCCAAGGATATTTGTTCTCAAAACCCTTAAGTAGTGACAAAGTTAGCTTGTTATTGGCTGCAAAAATAGAATTTTAGAACACAAAATCTTGGCTTGTCCGCCATATTCAGTTTGGAATCAGAAAATTCTACAGAAACAACGAGCGATCGCGTCAACCTATAGGTGTTTTCCCGTTAACCTCAATTTTTATGGCTGAATGCCTTATCCTCTATACATTTAAATGCAGTTGACCTCTTCCAACGGTT # Right flank : CACAAAATCCAGATTATCTTCCCAACGCCCAAAGCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTGCATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCTCGCTCAATTCGGCAATTCATCACATACTGATGTGGTGCAAAACCTGTTGATTGCTTAAATTGGCGCGAAAAGTAATACATACTCATCCCTACTGCTGTGGAAATATCGACCAAAGTCAAATCTTGGTCAAGATTTTCATGAATGTAGGAAATTGCTTGTCTGAGTTTCCAGTGTGAAAGCCCTTTATGATGATGGTTGTCAATGATGGTTCCACCTGTTACACAATAGTGTTTGAGTAGGTGAATACAAAGGGTGGTCGTCAGGGATTCAATGTAAATGCTACTGCCTTTATGCTCAGATTCTAGTTCTGTTT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 17171-17363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQL010000047.1 Nostoc parmelioides FACHB-3921 contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 17171 38 100.0 39 ...................................... AGAGTGGGTGTTAGGTGATGACGGCTATATGCACGCTCA 17248 38 100.0 40 ...................................... GCTCCTGGATCTGATGTAAATGCTTTCTTAGCAATGTTGT 17326 38 89.5 0 .................................GTG.G | ========== ====== ====== ====== ====================================== ======================================== ================== 3 38 96.5 40 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACA # Left flank : TTGATATCAGTAGTCGTGTTGATTACTGGAAGTGCGATCGCTACTTTAACAGCTGCATGGTTTAATCACAAATTAGGCGGACACACAGGCGACACCTACGGCGCAGTCGTCGAGTGGACAGAGGCTTTATTCCTCTGCGTACTGACCATACTCACATAACTTACCATGTAGGCAATAATTCTATCTGTGTTTATCTGCGTGCATCTGCGTTTTGATGCTACAGCCAAGCAGCAAACAAGGGTCTATGGTGGTGAGCCTCCTTATGAGCCACCAGATTATTTAATTTTGTAACGCCTACACTCTGGTGAAAAAGGTGTTTTTAAAGGCTGAAACGCACATTTTTACTAGGGCTTGGCAGTTCGTAACGGATTGTAAATATCACTGCTAATTCGTCGCAGTGAGCTATAAAAAGCTAGGAAGATTAAATATGTGTAAATAAAAGTAAAGTTCGTAATTTAACCTTGACATAGCCAGTTGCCAAAGCAATAACCCCATTAGCA # Right flank : GACTATCAGTCGCACATAAGAGTGGGTATTGCGAAATACCCCGGCAAGTGTCTATGCCAGTACCTGCCCGAAGGAGCATCATGGGTAACTGTGATGTTTCAAAGCTAGAGGGAAAAGCGTAAAATCTGCCAGCCGAAAGTGGAAGTAACGCAGGGTAAAACTATCAAAGGGTTAACGCAAGTGAATCTTCATTGAGGCATCGTGAAGCGGAAATACTGAAACGGCTGAAACAGTAATAGCGTCAACTGGAAAAACGCTTACAGGGTAGTCAGGCGACTCAGACAGAGAATATTCAAGGCAACCAAGGACGGTAGTCTCAAAAAGGTTCGCAGCCTTCAAAAACTACTATTGCGTAGTTACTCTAATATACTACTTTCCTTAAGCTCATCCCACCCCTAAAAGGGGATGGGATTTCACGTTGACGGTTGACGGTTAACAGTCAGCAGTTAGCAGTTAACGGTGGCGGGGCGGCTATCCCTCCCACCCCTTGAAGGGAGTGG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 115597-116440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQL010000010.1 Nostoc parmelioides FACHB-3921 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 115597 37 100.0 36 ..................................... TTGCTGGCTATATTAATCAGCGAATTAGTACCGGGC 115670 37 100.0 44 ..................................... AACTTGTTCCTCAAACTGGGCAGCCCAAAATAAATCACATCCAT 115751 37 100.0 35 ..................................... AATTGCTCTTAGATCCCAGTTAAAACATGAAGTAT 115823 37 100.0 34 ..................................... TACGTGGCTGGGCAGAACTGCCGCAGAGGGCAAG 115894 37 100.0 34 ..................................... TTCTTTGGCGAATGTGCCTCCAAATTTGAGCCAA 115965 37 100.0 35 ..................................... CTGGAAAGAGTACTCTAAGGAGGAACTACGGGAGA 116037 37 100.0 33 ..................................... TTTAAAGCTTGTTGTAGTTCTTGGCGTGTCATC 116107 37 100.0 36 ..................................... GTACTATCTGCCTTGGGTTCACTAAGTATTTCTGCT 116180 37 100.0 34 ..................................... ACCTGGAGCTAGTCGAGGGGGTGAAAGTAATAAA 116251 37 100.0 38 ..................................... ATGATTTTAGCTCCTTTAAAAATTAATTAAGTGTTTAA 116326 37 100.0 36 ..................................... TGGACGTAATGCACCCCAGACTTCCAAATACCTTTA 116399 37 83.8 0 .......C..................CCA...A...A | T,AAA,G [116419,116421,116434] ========== ====== ====== ====== ===================================== ============================================ ================== 12 37 98.6 36 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : AGAAGCAGTAAGTGCTTTGAAAGCACTACAGGATTTACCTTGCAATTTGCCACCGATTTTAGTTATTGACCAACAACTAAGTCGCTCTCAAGTTACTTCTCGCAGTAAACTGACTCATGCCAAAAAGCAGGAATCTGAATCTATCGCGGGTGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGATTTATTAACTCAAATTCATCAAACGTTGACTCTCAATGAACGGTAGCGTCAATCTATAGGTGTTTTTTTCCCAGTACCAAATTTTACGGCTGAAATGCTTACACTGTAAGCTGTTGAATCTGTTTAGGTTCGGTATGAGGTTGACGCGATCGCTTGAATCTTTTGCCAGAGTGGCTTTTTCGCTATTTTTTAAGATGCTACTCTTGACAACCCAATGGCTGAAAAGCTACCTTAGTTTCGGATTGACGCAACCGCACCTTGAAAACTAAATACAGTAAGCCTTCTAGACCCCGGCA # Right flank : AATAACATTTTTTTAAAATTTACTGCCTATATTTATTTACAAACAAAAGTTAGGTGATCATTCCATTAAAGATATGTTCATGGTAAATTTTTAACAGTGTGTTCTACTCGTCTCACCTCATCAATATCTCCACTATGAACATCGACCGATTGCAGGAACTTAAGCAGAAACTAACTATTGAAGCAGACTTGTCCGCGATCTGGTCATTTTATATGGATTCTTTTGTGGATGATACTGAATTTATAGAACTGGGTGAGCCTAAATATAATGAATATCTAGATGCTGTCATCCACAAAACTTGTGAGCAAATGTTTGGCAGGGTCATCAAGATTACTGACTTTTTGACAATCTACATTGCACAGTATGGTTTTTTCCATGCCCCTTTTTGGGCTGAAAAACGTATTGGCGGTGTGATTTATTTCGAGGATCTCAAAATTGGCTTAATTGCCGTATCTGCGGATTATCCTCCTACAGATGAAGTTAAGTATTCACGGTTTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 1510-1689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQL010000135.1 Nostoc parmelioides FACHB-3921 contig135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 1510 34 100.0 40 .................................. GGTGACTTTTTGAAAGTCACCGAAAAGCCAAGAAAAGGGT 1584 34 100.0 38 .................................. CTGGATTCCGTCTTCTCTTCTGCTTTTGCAGGAGGGGT 1656 34 97.1 0 .................................C | ========== ====== ====== ====== ================================== ======================================== ================== 3 34 99.0 40 TTCCATCCCCGTGAGGGGTAAAGGAATTAAAACA # Left flank : TTGGGTGATAATTTTATCTATTTCTGGAATATCCCTAAAGTTAATACTGGGATCTGTAAGTAGTTGTTGAGTGATTAACTCACGGGATAGTTTCGGGTCTAGTGGCACATTTTTGAGTGTATAAATTTCCTTAACTGAGGTAATGGCTTCGACTACCTGGTCGTGAAATCTCTCGGTAGTTATCCGCAACATTGTTCGTCTCTCAGGTGTGCAACTGCTGAGAGTCAAGCTCATGGTTAAGGTGAATAGGCAGAGTTTTAACCTAGTCAATTTCGGATTGATGGAATATGAGTATTTAATTGTTTTAGTTATACATTTATACTCAAGTTTATCTATTCAAATTACTTAATTCTTAACTTTTTTAGAGGTAATTTTTAAGTTTAGGTCGGTTTTAATTTTTTAAAAAATCTTCAAGGCGCACAGTTATCTGTGTTTACTACTTTTGTTTTTTGTTTTAGCACAAACACTTTGCCTTTAGATGGCAAAATTCTGTTTATTGC # Right flank : CCTACCCTTCCAGAAGCCTTATCCAGAGAGGGTTAGAGATAGCTATTTTAGCGGGGGGTACATTTTACCTGTCAACAAGCACAAATTATTGACAATAGAGGACTATTAGACCCCATTGAAACCTTTGTACAGTAAGCGATTCGCGGGGGTCAACGAAAGAATGATGGTTTTAGGGATCGGTCTACCCCCGCGAAAAACTTACGTGTCGATAGTTAAAAGAAACACTTTTACGTTCAATCGGAAACACAATATTAAGTTTTCAAGGTTCTGTGATTATGAGCAGTAGTATAACAAACTACTTTAAGTTGTGAAAGTCAGAAGTATTAATTTTTCTATCATGTAGTTACTCGGTAATCTGTATATATAGCGATTTGCAGTTGAGTCAAATACAGACCTAACCCCAAACCACTTCCCTTCTTAAGAGGGATTTAGGGGGATCAAACTACATTTTGCACCCAGCACAAAAATGTGTATACACCGTAGCCTACAAGGAGAAAGGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCATCCCCGTGAGGGGTAAAGGAATTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 31932-31250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQL010000014.1 Nostoc parmelioides FACHB-3921 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 31931 36 100.0 36 .................................... GGGAAATCCCGTGAACAGGTGTTGCAGAATTATTTG 31859 36 100.0 35 .................................... ACATTGATGATATCCCCAAACAAATATCCCAAGTT 31788 36 100.0 39 .................................... TAATCTAGAACGGTTGCATCAAACCTATGAACCAATAAC 31713 36 100.0 37 .................................... CCCAAGGTATTCTCCAATGCTCAGGATTTTACCTTTC 31640 36 100.0 35 .................................... TTGGTCAAACGCAAAATACATTGGACGTTGCTCAG 31569 36 100.0 36 .................................... AATAACGATAAAGAGATCATTCAGCGTGCGCTCACT 31497 36 100.0 36 .................................... ACATGAGGAGCAGTAATAACAGTAACTCCATCCTCC 31425 36 100.0 34 .................................... GAGATCCTTCCCCAGAGGAAATACAGCGACAATT 31355 36 100.0 34 .................................... TTCAAGATTGAACATTTATTTTCTTAATTTAGTT 31285 36 94.4 0 ........C........................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 99.4 36 GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCAG # Left flank : TAGGTGAAAGTCGGGATTTAGTAAATGATGTTACCCTTTTACCTGAAAATTACAATACAGAATCAATGCGATGGTTAATTCGAGATGAATATGGGTTACTAACTTTACCTTACTGGGTAGACCATGTAGGTTCGCGGGAAACGCGATGGCTAAGTTACGAGATTCAGGAATGTCCAGTATTTCAACCACCTGAATTATCTTGGACTTCGGTTCAAAGTAATTAGAGGATATCTTTACTTTTGCAAGCACCTCTGCTTGGGAAATTTCAATACTATAGAAAGTAGCCTTAATTCGTTATTCTACAAGCCTTTTAGGGATTTTATATGCTTCTAGCGTGCTTGCAACTTCCTGGAATGCTCTAAATACAAGAGTTAGGAGTTTTTAAAACTTTGCTTTTGCTATGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAAGAGTAAGTGCTTGTAAAATTGATGTAGAGCTTAGGCAAGTCAACAAATGTGGCGATCGCC # Right flank : GAAGACTGTGCTACAAATAAGTTGTCAGTGAAGCCAAGATTAGCCCTATTAAGTATCATCATTCCGAGAAATTTTACTGAGAATTTTTTCCCACTGCTGAATCTGGTTCTGTATTTGTAATTGGGGATGGGCTTCCCCCCGCCGTAGGCGATCGCTCAAATCTTGATTATCATCAACAGACAAATCCTCACCGCTTAATCGCTCACGGTAAAGAGCAATCAGTTCGGTTAGGGCTTTTTTATGGCTTGCTGATCCTCCTGGGTCAGAGAACTCACATTGACTGGGATCAGCTTTCTGCCAATTCTCTCCACCAACTCAGACCGACTTAAATCCATGCTGTCGGCGATCGCATCTAATCCTTCAATCCCGCTAGGAGTTAGGGCTAGGTTAACTCGTTTCTTCACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCCTTTTGCCCTTTCTTACCCATTGCCATCTAGTTTTTACATTCCTCCCAATCATAGTAAACATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 35710-34946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQL010000031.1 Nostoc parmelioides FACHB-3921 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 35709 37 100.0 37 ..................................... ACGTAAGTACCACCTATTAAACACACTTCTATGTTAC 35635 37 100.0 38 ..................................... TTAGAATCAACAGAAGCCTGTTGAGCTTGCAAAGTTGA 35560 37 100.0 35 ..................................... AAAGACTTTTGAGTTATATTGAACTTTCTCAGTCT 35488 37 100.0 36 ..................................... ATCTGTACTAAGATTAGGCAGCGTCAGTGTAACAAA 35415 37 100.0 35 ..................................... ATGTTTCCTGTAGCATTAGAAACATTTAAATCTAT 35343 37 100.0 34 ..................................... ACAAGCATTAATTAAAGAAGCAGAAGAACGCGAT 35272 37 100.0 36 ..................................... CGCTACAAGAGAACCCTGGGTCATAGAGTCTTTAGA 35199 37 100.0 36 ..................................... TTCTCATCAAATTTTGAGAAAACTTTTATTTTTAAA 35126 37 100.0 35 ..................................... ATGGCTAATAGCTCAGAATATCGTGAAGTAGCCTT 35054 37 100.0 35 ..................................... GAGATTACCGCTCCTTTGTATATAGCTCTCATGGG 34982 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.8 36 GTTGAAACCTTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : GTCAGTATTGGGGCAGCATATCCCCAGTATTTAAAAGAAAGTCCTGGTAATGAATTTATCTTTGGCTATGCTGAACTCAATGAACAGCAAATTCTAGAAGGGGTACGGCGACTGGCTGGGGTAATTCTGAATTCAGAAGGCTAATACTACTTTTACCCGTCAACATTGGTTATCCGATGGGGTAGTCCATATCCATCGCCCGTCAACCGTCAACAGCTATAATATTGACATTTCATACTGTGATTCAGCAGCGTCAACCTATAGGTGTTTTGCTGCACAGATTCGATTTTTTGCCTCTATGCCTTATCCTGATTAGGTTACAGCCCATAACATTAAAACTGGGGTTGACGCAATTAACTCTAAGCCTTGCCACAACTACTTTTGCGCTAATTTTTTCCCTACGCCTCTTGACAACCCAATGTCTGAAAAGTTATCTTGGCTCCATATTGACGCAACTGAACCTTGAAAACCAAATACACCAATGCTTTGAAAGCCAAGCG # Right flank : GACTCTGGTGCGTAAGTACTCTAAACTACAACCCTAATTTTGCAGAAAACCCAAGGGGGTAGCCAAAACAATACCTAAAGGCGATCGCCCAGAATATCTACCCATCCGTTTTATGTAGAAAATTAAACCATCTACTTCTAGGCAACTAATCAAAGCGCGAGTATAAAAGAAAAAACAAACACAAATTAATACTGTAAATTAACAGAGAAATAACATGGCCAATCGCTCGCGCAAGCTAACGCCAAAATCTTCTAAGCAAGACGGTTCTGATTTGGAAGCAAAGAAAGCCCGAATCCAGCAACAACAGGTAGGTGATACCGATTTGCCAAAGGAAGGTGATGGAAGAATTAATGAAACCCAGATACAGAAAGTGATTTCTCCATCAAAATCCTATAAACCGTCTTCAATAATTGCGATCGCCATTTTACTTACAAGTGCTGGCTTAGTGCTGAGTTGTACCTGGATTGGGGTTCTGTGGATATTTAACCCAGAACAGGTAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCTTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //