Array 1 317237-318729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATML010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2432 NODE_2_length_600059_cov_59.0605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317237 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317298 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 317359 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 317420 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 317481 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 317542 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 317603 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 317664 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 317725 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317786 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317847 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317908 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317969 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318030 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318091 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 318152 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 318214 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 318275 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 318336 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318397 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 318458 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 318519 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318580 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318641 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318702 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334862-336704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATML010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2432 NODE_2_length_600059_cov_59.0605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334862 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 334923 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334984 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 335045 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 335106 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 335167 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 335229 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 335290 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 335351 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 335412 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 335473 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 335534 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 335595 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 335656 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 335717 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 335778 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 335839 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 335900 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 335961 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 336023 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 336084 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [336126] 336126 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 336187 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 336248 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 336309 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 336370 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 336431 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 336492 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 336553 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 336614 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 336675 29 96.6 0 A............................ | A [336701] ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //