Array 1 3226582-3227359 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048814.1 Rhodococcus triatomae strain DSM 44892 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3226582 36 86.1 37 ...A.G.G..TC........................ CCCCGAACGAGAGGGTCGGCTGGTGTTCGCTGGTCGT G,AT [3226585,3226596] 3226658 36 100.0 39 .................................... TTCGGTCTCCCTCGTCACCCGCACCGTGTCCGCGAGCGG 3226733 36 100.0 37 .................................... TCGAGCAGCTCGTCGGGCCGGTGAAGTGATGGACGAG 3226806 36 100.0 36 .................................... CGCCGCCTGGTCGGTCCTCAACGCGAACCCCTACTC 3226878 36 97.2 43 ...............................A.... TGGGAACATCCGTGCCTGGGATGACCCCGACGGAATCGGGCGC 3226957 36 100.0 36 .................................... GCCAGCGGCGACGACGTCACCGCCTCGATCTGCCGG 3227029 36 100.0 36 .................................... GGTGGGGAGGTGGGAGGCGATGCCAGAGGGGAGGCC 3227101 36 100.0 38 .................................... CGCCAGTCGGCACGAGCACGCTCTGTGCGTCTCAGAAG 3227175 36 97.2 36 ...C................................ TTCTGGCCGATCCATTGTGCGCGGCCTCCAATTCCC 3227247 36 100.0 41 .................................... GACGCATACGCCGACGAACTCGAAGCGGCTGGTTTTACCAT 3227324 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 98.2 38 GCCTCAATGAAGGGCAGCTCCCGAAGGAGCTGCGAC # Left flank : TACTGCCTGGAGCGAATCGCGGAGATCGGTGGCATACCTGATGTGGGCGCCGAGGTAGCCGACGGCGGAGCTCTCGTCTGCGATTTGGCCGCCGCCGCGGGCTTTGTGCTGGAATTTCTGCACGATCAGCCTCGAGGTCTCGATGTCTGCTTCACCGATTCCGAGGGTCTCGTAGTAGAGCTCGTCGCTCGCTCGGTCCTGTAATCGCTGGAGCTTGCGGATGTAGTCGTCGCAGTAGTTGATGCACTCGCGCATCTTGTCCGGGTCGAGGCTGAGTTGGCCGCTGCCGATGGCTGCGGCGGAAAATTCCTGCCAGCTCCCCGGCGCGGGTGCGTCGCTTGCGCTCATGGTTGTGCTCCCTCCCTGTACGGCTGACGGCCGCTGCACGTCGGCCGAACTCCCCGGCGCGCACCATACCAGCAGGGGCCTGGATCGTTGACTGCGCGAAGGCCTGCAGTCTGGGGCGCCGCATGAACTGAGGCGGGGCGAAGGCCGTTGGT # Right flank : CCCGGACGGGCAGGGCTCCGTAGTTGTTGAGTAGCGGAGCTGTGGCCTGGTGGTTTGGGTTCGTTGGAGCGTGTGGGGGCGGTGGAGCGGGCATGGGGACAGGGGCCGATCATGGGTGTGTCTTACGCATCCAGATCGTCCACAAGGAGTCACCCATGCCCGCCGGGACAGTGTCCCCGATCGACCCATGCCTTGACCAGCTGACCCGGTTTGTCGGTGGTGTCGTCGACGAGAAGCAGGTGCCGCGGTTGATGACTGCACTCGAAGTGGTGCCCGATCCGCGGGATCGTCGCGGTCGCCGGTACTCGCTGCCCTCGTTGATCGCGATTGCCCTGTGTGCGGTTGCCGCGGGCGCTCGGTCGTATTCGAGTATCGCGGATTGGGCCGTAGCTGCTCCGCGGGAGGTGTTGGTGCGCTTGGGTATCCGGTTCCGTGTGCCGAGCGAGGCCACGATCCGGCAGGTCCTCGGACGGGTCGAGGGGGATGGGTTGGATCTGGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCCGAAGGAGCTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3229344-3228782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048814.1 Rhodococcus triatomae strain DSM 44892 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3229343 36 100.0 39 .................................... TGGGATCAGCCTTCGCCATGATCACTTCTCTCCTTCGAG 3229268 36 100.0 41 .................................... CTGCGACCCCAGGTGCGCTCCACCGCCGACAGCCCGGTGGA 3229191 36 100.0 38 .................................... GGGTATGGGTTCTCACGACGACGTTGCGCTCGATCACC 3229117 36 100.0 39 .................................... GACGAAAACCCCAGCGGGCAATCCCACCGGGGCTTCATG 3229042 36 100.0 38 .................................... ACGGCGATCCGGCGCGGCACTATCGCTGACCGGTGGGT 3228968 36 100.0 37 .................................... CGGATCCTCCGGAACGCGGGGTTGGCGTCGGCTGGGG 3228895 36 100.0 42 .................................... GCGAAGAGCCTGGGGGTCGCGGTCTCGGCGGACTCGATGTTG 3228817 36 97.2 0 .......................C............ | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 99.7 39 GTCGCAGCTCCTTCGGGAGCTGCTCTTCATTGAGGC # Left flank : AGCCCTCGCCTGTCCCGCCTCGTCGAGGGCTCCCGACCGAACACCGAGACGGCTCGGTGACCGCCGTGGAAGGAACCTGGCGAGGGGCCGCGGCGCCCTTCGACAGGTGTTCACTGATCGCCGACCCGCTCTTCTCTCCGGTTGCGTGTCACTGTCGTGGGGCGTGCCCGGTCGAACGGCGGTGCCGATACACGTCGGCATCGGCGTGCACACGCCGGAGCGCGGCGACGACCACGCCCGAGGGTGATCGCGCCTCACCGCGATACCGTCGGCTGCCCCAATCGGACGACCGTCTGTCGCCGAGCCCTGTCGCCGAGTCGTTTCGCGAGCGCTCCACCGGTGTACGATTTCCCGGGGAGCGCTCGCGTCCCATTTCCGCAGGTAGAAGACGAGCACGTGTCGCCCACGCCATTCTCGCACTCGGATTTCGACGGCCGGAGACGGAGCGCTCGCGAGAGGGGTGTTCCGCCGCTGTTCAGAGGGGGTAAATTTGGGGCGCT # Right flank : TCACGAGACAGCTCGGTCACGCGAGCGGCTGCCCCGTCCGGGCAGGGCTCCGTAGTTGTTGAGGCCCAGGGCCGCGACCTGCGGGTTCAGGATCTCAAGACCAGGTCGACAGCACGATGCGGGTTTACCGCGACACGTCGGCAGGCCTGGGCGATATTCGACTGCCCCGCCCGTCGATGAAGGCTGATCGCTGTATTCCGCAGCGTCGCCATCACCTGCGGTCCGTGACCGGCACGGACCGTGGAGCGGTCTTCGTCGAACGTCACGTCCCGTACCCAATGGACCCTGTTCTCGATCGACCAATGCCCGCGGATCCACCTCGCGAGCAGCTTCGGTGGCGCCTGCTCACAGGGCAACGAGCAGATCGCGTACACAACCTCGATGCTCCACCGGTCGGCACCGATCCGGCGGCGACGGCGAGTGATCTCGATCACCTGCTGCGCGTACGGGAATCGAAGACCACGGGTGACGGTGACGATCTTGTAGATCCGCGCCTCCTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCCTTCGGGAGCTGCTCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 3246677-3248042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048814.1 Rhodococcus triatomae strain DSM 44892 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3246677 36 100.0 39 .................................... GTCGGTCGCATCGTCCGGGTTCGGTCGCGGCACGCCGTC 3246752 36 100.0 40 .................................... TGAGCCGACGGACGAGAGTGCGCACCCGCTCGGAATCCAG 3246828 36 100.0 37 .................................... CGACACGGCCGCCGTCGGGTCCCTCGCCGCCGAGACG 3246901 36 100.0 39 .................................... TCTCGAAGAGTTGGCCGCGGCCCTCGGCGACGACCCGAA 3246976 36 100.0 34 .................................... GGTCGTCGGGTCACGTACGGAGGAGCCGAACCCG 3247046 36 100.0 37 .................................... GGCATGCCGACGTATCTGCCCGGCGGCCAGGTCGTGG 3247119 36 100.0 38 .................................... CAAAAAAATGCCCCCTGTCGGGATGGGGTGCCACGGCC 3247193 36 100.0 39 .................................... TTCGATGACCCTGCCCGACTTCGCGATGGAGCACCTGGG 3247268 36 100.0 37 .................................... TCGCCGGACGCCTCGGCCTCGAGCATCGCCGACACAC 3247341 36 100.0 39 .................................... CCGCAGCCCCGCACCGGACGCCGCCCCCATGCTCACCGA 3247416 36 100.0 39 .................................... TGCTCTCCCGCTTCGGCCGGGCGAGGCGACTGGCAGCAG 3247491 36 100.0 36 .................................... TCGAGGAACCGCAGCCGGAGGCGGTGGACGTCCCGG 3247563 36 100.0 40 .................................... ACCATGGGAGCGCTCCGGCAGGCGTTCATCTACGCCGGTG 3247639 36 100.0 38 .................................... GGCGAAACCGTCGCCGACGCCAACGCCGACATGAAGAA 3247713 36 100.0 37 .................................... GAATGGTCAAAGTCGTTCGCGGCCATGCAGCGTCACG 3247786 36 100.0 38 .................................... ACAGCTCCGGCGTCGTACATCGTGTACGACACGCCGCG 3247860 36 100.0 40 .................................... GAGCAGCCCGTCCTCGTCGTGCGAGGCGGGCCGGACGAGG 3247936 36 100.0 35 .................................... GGCGAGCACATGCTGCACCACTTCGACGACCACGC 3248007 36 94.4 0 ..................................CG | ========== ====== ====== ====== ==================================== ======================================== ================== 19 36 99.7 38 GTCGCACCTCCTTCGGGAGGTGCCCTTCATTGAGGC # Left flank : AAGACGCGATGAGGCGGGACGACACGCGGCGCACGCTGATCGCGTACGACATCCCGGACGACAAGCGCCGGGTGCGACTTGCCAAGCTCCTGTCCAGGTACGGCGATCGCGTGCAGTACAGCGTGTTCGTCGTGGACATCTCGCCGGCTCGGTTGGTTCGTCTCGAACGGGAGATGGATTCGGTCATCGTGCGTTCGGAGGACTCGGTGCTCGTGTGTGATCTCGGCTTGACCGCAACCGTCGAGGACGGCCGATTCAGCTACCTCGGAAGGTCGCGACCGATCACCGACAATTCGTCGATCATCATCTGATTCCGAGGTGTTTCGCGAGCGCTCCGTCGGTGCACGATTTCCTGGGGAGCGCTCGCGTGATGTTTCCGCAGGTAGAGGCCATGTTCGTGCCGAAGAGTAGCCTTGAAGCCCTCAATCGGGGTGCTGAAAGCGGAGTGCTCGCGGGGAGGGTGCTCCGATGCTGGTCAGAGGGGGTAAATTTAGGGTGCT # Right flank : GGAGCGGCCCGCTTGACGCGGCTCGACGTCGATAGCGGGAGGTTCTGGTTGTCCTTGGTTTGGTAGTTTTGACGGGCATTGGCGGTGGGACGAGTGGGGGATATGACCGAATCTGGTGAGGATTGGAAGGCGTTTGCGGAGTCGTGTGCTGCGCACGCGTTCTCGATCGAGCGTGATGGGCTTGTGCGGCTGGTTGCGCTGTGTGATCAGCATGCGGCGGACATGCAGCGGTTCGCGGATCGTGCGAAGGTTGAGCTGTACGTCAACACGTTGGGTATCGGGGAATCTGAGCTCGAGTCCGCCCGTACGTTGACGGCGAAGTTTCAGGACAAGGCGATCGGTGGTGGCAGCATCGCGCACGAGTCGAGTGCGGTGGGGGTGTTCGAGGCGCACCGTGATTGGGCTCGGGCGATGGGTGACAGTTTCCGGGCGGCGTTGCGGCGGTATGAGGAGCAGGATGCGGTGAATGCGGCTGGTTACGGGCAGTGGGGAGATTCGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCCTTCGGGAGGTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 3265132-3263099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048814.1 Rhodococcus triatomae strain DSM 44892 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3265131 36 100.0 40 .................................... ACCTCCGTGCGGGTGGCGATGAGACATCGCACCGGGTCGA 3265055 36 100.0 36 .................................... CGTCGAGGGCCGCACCGAGGCCGACCACGGTGCCGA 3264983 36 100.0 39 .................................... CCCCAAGTCGTGCAGGGTTAAGGCCGTAGAGCCCGCACC 3264908 36 100.0 41 .................................... TCGGAATTTGCCCCCAGTGCTGCATGCGCGTGGAGGCCGAT 3264831 36 100.0 40 .................................... CGACGGGGGCGGCGGCGCCGTAGCGAAACTTGTTCTCGAC 3264755 36 100.0 39 .................................... ACCGCATGGGACGTCCACAGCGACCGCTCCGGCTGGCGT 3264680 36 100.0 35 .................................... ATCGCGCACAGGTCCAGGTTCGCGATGAACGCGAT 3264609 36 100.0 37 .................................... ACTACCAGGTGACACCCACGCAATTACGCGAACAGTC 3264536 36 100.0 39 .................................... ATGAGTCGGGCGGTCGTGCACGCGGGCAGCAGGACCGCA 3264461 36 100.0 43 .................................... GCGGAAGAGCACCGGTTCCGTGATGGCGTGTGGGGTGGCCGAA 3264382 36 100.0 36 .................................... CGCGAGAACGCCGAGGTGATGCTCGAACAACTCGTC 3264310 36 100.0 35 .................................... GTCGATCCCGCCCGCCGCGGCGAAGGCTACTTCCG 3264239 36 100.0 37 .................................... GAGATCAGCCGGGCGCTAGGTGAGTCGCTCGTCGACC 3264166 36 100.0 39 .................................... GGCTGTCCGATTCGTCTGGTATGAATCCCTCATGACTGC 3264091 36 100.0 39 .................................... TGGAGGGCAGGCCATCCTGTCCGGCAACGGCCGAATCCG 3264016 36 100.0 38 .................................... CCCGCAAGCCGCGTCGCCGGTCGCCGTCTGGTGACTGG 3263942 36 100.0 38 .................................... TGCTTCACTTCCACCAGTCCTTCCCCAGCTTCTCGGCG 3263868 36 100.0 35 .................................... GCTCGAGGCGGCGCTGCCGGAGCTCCGTGCGTCGG 3263797 36 100.0 37 .................................... TCGGACGCGATGTTGTGGACTTGGGGGCCGGCCGGGT 3263724 36 100.0 37 .................................... CCGACGCGCCGAGTGAGCTACCGCAGTAGCGATCGGC 3263651 36 100.0 38 .................................... CGGTACGCCGACGACGACAGCGAGGTTCTCTGCCCAGG 3263577 36 100.0 37 .................................... GTCAACGGAGCGTACAAGAGTAACGGCCCGGTGTTCG 3263504 36 100.0 35 .................................... CGCCACATCGCCCACACGATGAAGCCCACTGCGAT 3263433 36 100.0 39 .................................... AGCCACTACGGCAGCCGCGGAATCATCATCATGACGAGT 3263358 36 100.0 38 .................................... GAGTGGTCCGACGTCGAGGCCGAGCTCCACGCCGCCGA 3263284 36 100.0 38 .................................... CCGTACACCGACGCGGACGGCACACTCGTGCAGGAGGT 3263210 36 100.0 40 .................................... ATCCTCGAGGCAGTGGACCCGTGGTCGGATCCGCAGGCCG 3263134 36 94.4 0 ............G.C..................... | ========== ====== ====== ====== ==================================== =========================================== ================== 28 36 99.8 38 GTCGCAGCTCCTTCGGGAGCTGCCCTTCATTGAGGC # Left flank : CGCGGTGGAGACGGAGTTCTCCCTGGTTCGCTTCGACGGCGACCAGGATCGCGCCGACAAGGTGTACGAGGGGATCGACCCGCTGGTCGCGGACGACATCGCCGAGATCATCGGATTCGTCGCGTCCCGGCCGCCGCACGTCAACCTGGACCAGATCATCGTCAAGCCGCGCGATCAAGCCGATCCGGGCCGGTTCCACCGGCATTGAGCGACAGCCGGTTCCACCGACTCAAGACTGCTCGGCATCAGTGTCGGAGAAGAGCCGGGGACTTCCCTCGAGTGGCACGGTTCCCTCGACGACAGCGAGCCCAGGAGAACCCCTTTGCGAGCGCTCCGTCAGTGCACAAATCCCCGGGGAGCGCTCGCGCCTCGTTTCCGCAGGTAGAGAGCGCGTACGCGTCGTCCACCCCATTGTGGCCCTCGGATTTCAGCACTCGGAAGCGGAGCGCTCGCGGGAGGGGTGTTCCGCCGCTGGTCAGAGGGGGTAAATTTGAGGCGCT # Right flank : AGCATCGATCCTCGTCGGCACCAACGGCCCTCGCCCCACACAGCAGGCCTTCGCGCAGTCAATGATCCAGGCCCCTGCTGGTATGGTGCGCGCCGGGGAGTTCGGCCGACGTGCAGCGGCCGTCAGCCGTACAGGGAGGGAGCACAACCATGAGCGCAAGCGACGCACCCGCGCCGGGGAGCTGGCAGGCATTTTCCGCCGCAGCCATCGGCAGCGGCCAACTCAGCCTCGACCCGGACAAGATGCGCGAGTGCATCAACTACTGCGACGACTACATCCGCAAGCTCCAGCGATTACAGGACCGAGCGAGCGACGAGCTCTACTACGAGACCCTCGGAATCGGTGAAGCAGACATCGAGACCTCGAGGCTGATCGTGCAGAAATTCCAGCACAAAGCCCGCGGTGGCGGCCAAATCGCAGACGAGAGCTCCGCCGTCGGCTACCTCCAAGCGCACATCAAGTACGCACGCGATCTCCGCGATTCGCTCCAGGCAGTACTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCCTTCGGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //