Array 1 3621-3292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMP010000097.1 Acidithiobacillus sp. RW2 Contig97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 3620 29 100.0 31 ............................. TGCGTTGACCGACGAAGGCGTCCAGCGCGGA 3560 29 100.0 31 ............................. CTCGTCCATTTTCGCTGCTGTCGCGTCCATG 3500 29 96.6 31 ............................T CTGCTTCTTCTTTTTGCCGCGTGTGATGCCT 3440 29 96.6 31 ..............G.............. TAACCTTCCCGATATGCAACCCGATCGTTGA 3380 29 100.0 31 ............................. AAACCGAAGATACGGAGCGCATCGAAGCAAC 3320 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= =============================== ================== 6 29 98.3 31 GTAGAACGCCGCATAGGCGATTTAGAAGA # Left flank : AACAACGCAGCTACTGTCAGCCGAAGCCGCTTGGGCGAAGCGTCTCTATGCAGTTCTGGCGAAGCGGTTCCGCTTACCCTTCGCGCGGGAAGAAGGAAAACGCGCAAACGAAACCGTCGCGGATCGCGTTAATGGCTTTTTGGATCACGGAAACTATATCGCCTATGGTTATGCGGCCGTGGTCCTGCACACGTTGGGAATCCCGTTTTCGTTTCCTGTATTACACGGCAAGACCCGACGCGGAGCGCTGGTGTTCGATGTGGCTGATATCATCAAAGACGCGCTGGTGATGCCTTTGGCTTTTCAGTTCGGAATGGATTCACGCAAAAAAGACTCCGCATTCCGCGCGGAATTGATCGCTAAAGCGCAAGAAATGGTGGTCATGGATGTCTTGTTTGATACCGTGAAAGCGGTTTGTGTTCGAGCGGAGGCTTAGTCAGGCAGCTTACAAACTTCTGGACATGCTTTTCTGTAGATCAGGAGCCGTTCTTTTACAATCA # Right flank : TCAATGGACAGATCATGACGACACCGTCGACACAATCTTTCCTCCCCTCCAATCCCACGCCTAGAGATATTTCTTAAACCATTAGGTTTCACCTAACAGTTCGATATTGCATAAAACCGCCTATGTCATTAAGATAGCGTTATATTAACTCCTATAAGGATAACCCCATCCTATGTCAACTCCCTTCTCAAGACCAACCTCTCCCCAGCGTCTCTCCCGTTTTTTGCGTGCTCTCTTCATGGCCAGCGTTGGACTATCCCTGGCTTTGGGTATCACTGGAAACGCCGAAGCGATGCCGATGATGCCGCTGGCCTATTACAATCAGCCTGCACCCATTCCGCAGCCCCCAGAACGGTATCTGGACCGGATGGCACTGATTGACGCGGGAAAAGATTACACGCAGTCACCCTCCCCGGGTTACGTGCTGGATGCGTCCTCCGTGCTGCGATTCCCGCAAAACTATCCTGTAGGGATGGTCATCATTGGGGACAGCATACTCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACGCCGCATAGGCGATTTAGAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 8335-7766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMP010000097.1 Acidithiobacillus sp. RW2 Contig97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8334 27 82.1 32 CA..C-....A................. TTGTCATTGCCACCTCGAATTCAGCTTCCAGA AT [8325] 8273 28 100.0 32 ............................ GGTGCAAGCGCAGCACAAGCGGTTGCCGAAAA 8213 28 100.0 32 ............................ TCTTAAAGACAAGGGCTGCAGCCATCATGCGT 8153 28 100.0 32 ............................ CACACCGGCCGAAATCAAGTCTGCTTTCCATA 8093 28 100.0 32 ............................ ATCTTGGCAATGTCGGCCACGGGGTCGATGCC 8033 28 100.0 32 ............................ ATATAATCCCGGTACATCTGCGCCGTACTCAA 7973 28 100.0 32 ............................ TAGCTCATGTTCCGCATTAACTGCATCATTTG 7913 28 100.0 32 ............................ ACCATCGGGCACCACCTGCCTTTGGCTCTCAC 7853 28 100.0 32 ............................ TTTTTCGATCTGGTACCCGAGGGCTTTGACCT 7793 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTAGAACGCCGCATAGGCGATTTAGAAG # Left flank : GCAGAGATCGACACCATTCTTACGGAAGATGCCGTTGATCTGCTGGCCACCAAGCTGCGTACACCGCTGCAAATTCAATTGCACCTGACTCTGGCACTCGAAGCCGGTTACCAGGCGGGCGAGCGCCCGGTGTCAGCAGAAGTGGTCGAATCGGTGCTGTCACGGCAGATGGATGATCTGGAGCCGACCCTCACGCGCCACGGCTATCACCTCAAGGACCTGGTAGATCAATTCGATGCCAGACCGGCCGAGATCAAGGCCTTTCTCAATAATACACTGGACCCGGCACGCGCCGCTGAACTGCGGGACAAAATGCTGGCTGTTGGCCTGCCGATTTAGGCGTCGTCAGTTGCAATTAATGTGAGCACGCCGTCATGGATTGCGAGCACGGGCGGATGATTGCGAGCATAGTTGCAAATAATGTGAGCACGAAGGCCCGTCAGTTGCAGTTAATGTGAGCCGAAAAAGCCCATGGATTGCGAGCACGCCGTTTTCGATTG # Right flank : ATTTGACAGAATAACGCCACAACACTTAACATAGCGTTTCACATACCACGCTTTTCGCTTTTTGTAGCATGTCTTTTTTATTAAAAAAGGATTTTTTAATGCACGTTGTCCTCGTCTCACAAAGCACCGGTCGCGCCTTGCAGCGTACCCGCTCCATCATTGACCGGTTTGCCGTGCGGTTCGGGACAGATACATGGATGACGCCGATTACCACGGAAGCACTTGCGGGGCTGCGAAGGGATTTGGCGCAATCCGCTACGCGGGAGATGAGTGTAGCCTGTTATCGCAATGCTGGGATGCAGAAGATGACCCTGTTGTGGACGGTCGGTTCCAGAAAAACATTTGCGGAACATGGCGGTGTGGCGGTGGCTACCGTATCCAGAAAGAAAAACCCTATGCCGGAGTATGTATCTACCGTAAAAACCTTGGCGCGGCTGTCCGGGCTGACCCATGATCTGGGGAAGATGAACACCTTTTTTCAGGAAAAACTGATTTCAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACGCCGCATAGGCGATTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 12488-12040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMP010000097.1 Acidithiobacillus sp. RW2 Contig97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12487 28 100.0 32 ............................ AACTGGCGGCAGTAGAAGCGGGATCCCCATAT 12427 28 100.0 32 ............................ ATTCATCCGGCTTACCGTCAAGTTGCCCATAC 12367 28 100.0 32 ............................ ATGATTATTCAGTACACGGCGTCAGGTCAGAA 12307 28 100.0 32 ............................ TCGGGCGACGGCAATTCTGGCTCTGACGATTC 12247 28 100.0 32 ............................ GTTCGTGTACGTGCCGGTTTCACCGTCAATGA 12187 28 100.0 32 ............................ TTTATTTCAAACCCATCTTTCGTTTGCTCGAT 12127 28 100.0 32 ............................ CTTGCGAAAACGCAAAACCTTGCTTGTCCTCC 12067 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTAGAACGCCGCATAGGCGATTTAGAAG # Left flank : GGAGCGCTGGATGTGCGGACGGGTCAAGGAAACGCCAGAATGTGAACGATGGGCCCTGTATCAGCGTGTGGCCTTGCCGTCCCGTTTCCATGGGGTAAAAAGGGCCCGCTTCCCGGACTACGCGAAGGAGCGGGCGATGAAGAAACGTGAAAAAGCGTTGGAAGACCTGAAAGAATTGCCATTCTTTTTTGTGCGGTCGCAAAGCGGAAATACGCATTTCCCGTTTACCGTGGAGAAGCGGATCGTGAAAGACGCATCTGCAGAAACAGTGCAGGGCAAGGTCAATGCTTACGGGTTTTCCACAAAGTCGCCGTTCGTCCCGCTGCCAGAGTTTTAGCGGTTTGCAAACTCTTGGGCATAGTTTCGGGCGGCCCAAGAGTCGCTCTTTAATAATCAATGAGTTACAAAACTCTTGGGAAAAGGATGTCCGAGAGTTTGTAGAGTAGGTTAAGTGTTTGTATAATCAGGTTTCACTGTTGGGAAACAGGGCGATTTTTACG # Right flank : TGATCGTGGCGGCGAGTCCGACCCGTTCTGGAGTAGAACGCCGCATAGGTGTAGCGGCTTGCAATCGAAAACGGCGTGCTCGCAATCCATGGGCTTTTTCGGCTCACATTAACTGCAACTGACGGGCCTTCGTGCTCACATTATTTGCAACTATGCTCGCAATCATCTGCCCGTGCTCGCAATCCATGACGGCGTGCTCACATTAATTGCAACTGAACAGGTCCACAAAACGCTCGTTTTTTGGACGCACCAAGGCTCCGTTCGGAACACTGCTGAAATCTGCCATTCGGCACCTCATAAACCCTTTCCAATATTCAAGGTCCGGCTATACTTGAATCTCGTGACTTATTGGACTGAACGCCATGCTGATTGGCTACGCACGGGTATCCACCGATGACCAGAACCTGGATCTGCAACGCGATGCCCTGCAGGCGGCGGGCTGCGAGCGGATATTTGAAGACATGGTGAGCGGCGCGAAGGTCGATCGCACTGGCATGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACGCCGCATAGGCGATTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 7706-8101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMP010000068.1 Acidithiobacillus sp. RW2 Contig68, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7706 30 100.0 31 .............................. CTGATTGCTGATGCTCTTTATTGTTCCAGGT 7767 30 100.0 31 .............................. GTGACCCAAGGGATACCCTCTCTCCGTGTGG 7828 30 96.7 31 C............................. CCACAACCTGTGGACGGCTCGTTACTACGTA 7889 30 100.0 31 .............................. CTTGATGCCGTCATGCAGTCTTTTCATCCAT 7950 30 100.0 31 .............................. CCCAGCCGCATTGCCGCGACGTGCGACGGTT 8011 30 100.0 31 .............................. CACTACGCGTCCGCCAATTTTTTCCATTTTT 8072 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 99.5 31 ACCTTTCATCCCCGCATACACGGGGCAGAC # Left flank : ACTGCCGGTCGAAATCGCCCCACTTGCTGTGATCGGATACGCCTTCTTTCCAGCCCGTGGACATCAAAAAGGATTGCATGGCTTCGCGAGCCTTCATAGAAATATCCGCGCGACCAGCTAACTCGACAAACTTGTCAGGATGGATGTATTCCATCACCGTGGCCCATGTTAACGACACTTTATTCAGATCACACAAATCACCAAGCCCCATCATCAGGCTGGTTATCATCGTTTTTCCATTGATGGCAAAAATGCTACCCCCAGTTAGAGGGGCATTAAGCCTTGCCATGGTTATCAATAACGACTTGAAAGCTTCTACTTTGTCCCGGTTTTTCATTGAAAGCCACTCCTTTGACGTCCCTCGATTGCGCAGGAAAACCCGAGGCAGCCCAGGGGTAGAAGGCTTCGCCGGCCCCTTTCCCGCAACATAAAACATGTTGGCTATGATAGCGGTATTATAAAAAAATGACAATGGACTATCAGTGGCCCCACGGAAAGGA # Right flank : CACTTCTTCTAACCCGCTATTTCACAACAGGTTTTAACCACCTTCGGAAGTCACCGATTTTTTAATTCGTCGGCGTTTTGTGCTGATTAGCATTAAACCGTCAAAATCTTCCACTGTATGATTATCGTGATTGATCAACTCTATGTCAAATCCAATCTCGTTATTCTTCGCCGTAATGATGGCGGCTTTCTGCTCACCACCCATCAACGAATACGTGTTCAATGATGCGTTCTTGATTCAGTGTCCTGATCGTGAGACAAAAACAGGTCGCGCTGCAGGTACTGAATATCTTTCAGGAATCCAGCATATTGTCTTTTTATAGGGCCTTCAGAAATGTTATCGATGAATTCATGAACGCTCCAGGAGAGTAATTCCTCCTTTTCCCAGACCGAAAAAGACCATTGGTCACGACGATCACGAAAAGCTCCATACCAGGTATAAAATTCATCTTGATATCGCATCGCGACATCCCCGTTCTCATCGGTCCCCATCTCGTGGTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTTTCATCCCCGCATACACGGGGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 9788-9272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMP010000068.1 Acidithiobacillus sp. RW2 Contig68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9787 29 100.0 31 ............................. GCACCGGCACAGGGATTTGAACCCCGATATC 9727 29 100.0 32 ............................. GACAGATTCAACAGGATTATCCAGTCCTTCCA 9666 29 100.0 32 ............................. GAAAGGATACCTGCACATCGCGGTGCCGACCT 9605 29 100.0 32 ............................. GATGTGTGGATCGCTTGGGAGAGGATACTTAC 9544 29 100.0 32 ............................. GTGTACCAAACGAACATTTCCGGCTCCTTTTC 9483 29 100.0 32 ............................. CATAAACGGCCTTCTTGGCATCGACCCGTCCC 9422 29 100.0 32 ............................. GCAAGGCTGTCGGCCACGGCGGTGCTGATCGC 9361 29 100.0 32 ............................. CGGGACAATGGCGTAAACGTGATGGGATTTTC 9300 29 79.3 0 ....A..................TC.CCT | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTCTGCCCCGTGTATGCGGGGATGAAAGG # Left flank : TGGTGCCGCTGGCCTTTGAGATCGCTGCAGCCCACGGCAACGCGAAAGATTTGTCCGGGCTGGTGCGGCGCGGCTGCCGTGATTGGTTCGTCAAAGAAAGGTTGCTGGATCTGCTGGTGGATATCATTCAGGAGGTGATCGGTGCCCAAGAGGTCTAGCGCATGGATGGTGATCTCGCTTATCAAGCCGGAAGCCGCGTTGCGTGGCGCATTGTCGCGTTATTTTGTAGAAATTCCAGTACATACTTTTGCAGGAAAAATAAATCGCCGCCATGCGGATATAGTGCTCGAAAAAGTGAGGGCAACCAAAGGGAAAGCCGCCATCATTACGGCGAAGAATAACGAGATTGGATTTGACATAGAGTTGATCAATCACGATAATCATACAGTGGAAGACTTTGACGGTTTAATGCTAATCAGCACAAAACGCCGACGAATTAAAAAATCGGTGACTTCCGAAGGTGGTTAAAACCTGTTGTGAAATAGCGGGTTAGAAGAAGT # Right flank : CACTATTTTTTTGAATGATCGCAGTAGGTATTGAGGAAGTCACTCACCACTTACATTCAAAGGAAAACGCCATGTCACAAGAGGTCATCACTCGTACCCCATCCACAGAGGCCGACGTATCTTATCGCAATGGCAACCGACCTTCTGAGCAGTATGCCCGTATCAGCCTGACCTTGCCGGAGATGGCGCGGCGGGTGAGCACCCAGGCCGATCTTGATCTTTTGAAAGCCAGGATTAACCAGATACCTGGGCATGACCAGATTCGTCGGTCTGGTGCCTACCATCGGGCGATGGCAATTGCACAAACGCGGATCCGAACGGCAAGCCTTTTCGGTTTTGATAAAGTCGGCGGCATCAAAGCGCTGGCTTATGGTTCTGGTATGGCGCTGTATTTTGATCGCCGTTTTGGGTTTTTCTTTTGCGAACCGAATCTGTATACGATGGGTGACGATAACTTTTCTGTGACCATCGCCATATCGACGTTCATCCTGTTCGCGCCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGTGTATGCGGGGATGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 11625-10978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMP010000068.1 Acidithiobacillus sp. RW2 Contig68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 11624 29 100.0 32 ............................. CATTGGCAGGCATCAGCGCCCACATTTCCGCC 11563 29 100.0 32 ............................. TGACCAATGCGGGTTTTACGCTGGCCGCCGCA 11502 29 100.0 32 ............................. CGGTTGCAATCTGCTCCGGTGTCAGTTTTACC 11441 29 100.0 32 ............................. ACCCGGTTCCGCCACTCACCAGTATGTTTTTC 11380 29 100.0 32 ............................. AAAATCCGGGAATGGGGGCTGTCTTTAGATCA 11319 29 100.0 32 ............................. GGGATGAAAGATGCAATGACAGCAACTACGAT 11258 29 100.0 32 ............................. TTGTAGGGCATTGCGAAGCGGTGCCCGTCTGC 11197 29 100.0 32 ............................. GATGGCTCGATAGTAGAAGCGAAAGGGTTCCA 11136 29 100.0 32 ............................. CAGCTTGTGCATCTGGTAGTCGCTCCTGACCG 11075 29 89.7 38 ...........A..C......G....... TGCTACGGGAATCCCGCTGATATTTTCCGCTATCTCAG 11008 29 75.9 0 ..............C...TTCG.....TA | GC [10981] ========== ====== ====== ====== ============================= ====================================== ================== 11 29 96.9 33 GTTTGCCCCGTGTATGCGGGGATGAAAGG # Left flank : GGATGCCGACCGAGGACGAGGCGCTGGAGAAGTGGACCCGCGCAGTGACGGCAGGTGGTTTCCAGGTGGAGCATACCCGCATGGTGGAATCTGCCATGTCGTTCTATCACCGGCGGTTGGACAGCCATACGAGGCTGCCGTTTTGGTTGGTAACCAGCGCTTTGACGGTGGTGGATGCGGAAAAAGCAGCGGAAACCATGGTCAGAGGGGTTGGCCGGAGTCGGGGGTTGGGGTTTGGGATGTTGATGGTAACGGGGTGAGGCGAACGTTCCCCATTAGATTTGGTCGTCGCCAATAATGATTATATTGGTCTAAATTTATCAAGACCATGTGAAAACCCTCGCTATTCATGGCGAGTGGGAATGCGAATAAGGACGACTTTATTGATCAGAGTATTCCGAGCGATTAACGGCCATGCGCAAAATCTGTCTCAGAATTAAAAAATCGGTGGCTTTTGATAGCCGTAAAAATCCGTTGTGAAACGGTATGTTGGAAGAAGG # Right flank : AGAGGTGAATAAATTCAATGCTGCCCGTGTCTGGACGTATCTCCTTTTTGATGATGGACCATTGCAAAATCCGCATGGGAGGTTCCGTGCCAATACAGATTGACATGGGGCTTGCTGATGGTAACGCCGAAGAAACCGTACAGGAAACACCTATTCCCATAGATCGTCTGGCCTGCCTGATGTTGGGGCCAGGCACATCCATCAGCCAGGACGCCATCAAGGCGTGCGCGGACGCCGGTTGTCTGGTGTTATGGACTGGTGAACACGGCGTCCGGGTGTACTCGGCAGGTCAACCGAGCGGCGCGTCCGGCGCGCATATTCTGCGGCAGGCTGGAATGATTTTGGACCCGCAAAAACGGTTACAAGCGGCGCGGCGGTTATATGCCCGCATGATGGGAACGGAGCCTCCGGCTAATCGTTCTATCGAACAATTGCGCGGACTGGAAGGCGTCTGGGTGCGTAACCGGTATGCGGAACTGGCGAAACTGCATCAAGTGGAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGTGTATGCGGGGATGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //