Array 1 112318-112018 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIG01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0827 NODE_3_length_215414_cov_387.101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112317 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 112251 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 112185 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112119 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 112053 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 111549-113121 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIG01000001.1 Pasteurella multocida subsp. septica strain CIRMBP-0827 NODE_1_length_618177_cov_373.017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================== ================== 111549 28 100.0 32 ............................ GATCAGCAAATCAAAGATAAATCTTTCAAAAG 111609 28 100.0 32 ............................ TATTTTTAAACTTGTCGATTTCAAACCGATCA 111669 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 111729 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 111789 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 111849 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 111909 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 111969 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 112029 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 112089 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 112149 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 112209 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 112269 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 112329 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 112389 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 112449 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 112509 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 112569 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 112629 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 112689 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 112749 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 112809 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 112869 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 112929 28 96.4 78 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 113035 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 113095 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ============================================================================== ================== 26 28 99.2 34 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15553-16300 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIG01000005.1 Pasteurella multocida subsp. septica strain CIRMBP-0827 NODE_5_length_190299_cov_350.439, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15553 28 100.0 32 ............................ AGATCTAAAAAGCCACCAAACAGCCACTAAGT 15613 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 15673 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 15733 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 15793 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 15853 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 15913 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 15973 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 16033 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 16093 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 16153 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 16213 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 16273 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //