Array 1 17463-16336 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFQL01000065.1 Escherichia coli strain JML130 sequence065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17462 29 100.0 32 ............................. CTCAGGCAAGGGCGGTGTAGGCAAATCGTCCA 17401 29 100.0 32 ............................. TTCTGCCGTCCAGATCTCCGGCTCAGACAATG 17340 29 100.0 32 ............................. TCGATCCGCTGGCGGTGGGCGCAAACCAAACC 17279 29 100.0 32 ............................. TATATAAATCGCAAAGCTCGGAAAATGTTTTA 17218 29 100.0 32 ............................. GAAAAAGGGTGGTTTCGTAATCGGTTAACACC 17157 29 100.0 32 ............................. AGGACCACTGGCACGGCGGCATTTATCCGGGC 17096 29 100.0 32 ............................. CGAACCGACTGACTGCCCGTTTTTAATCCAGT 17035 29 100.0 32 ............................. GGCCTCGCCAGTCTGCGTGATACCGTAGTGAA 16974 29 100.0 32 ............................. GCACAGGGCTCACGAATATTTTTTTAGAGCCT 16913 29 100.0 32 ............................. CTGCGACAGGTTGCCAGATGAGTTCACACTGG 16852 29 100.0 32 ............................. ATGGTGAGTGGTTGCATATGTGCCTGGCTATC 16791 29 100.0 32 ............................. GATTGTTTGAGATACGAGCAAAGGCGGGTGAT 16730 29 100.0 32 ............................. ACTGCTGCTTATTTGCGGCAGATTGCGCTGTG 16669 29 100.0 32 ............................. TATGATCAGAATCAGGGATACAGAGAGGGTAA 16608 29 100.0 33 ............................. AGCCTCGGCACACTCGCGTACTGATTCGCCCAC 16546 29 100.0 32 ............................. AAAACCCTAAAAATGATTTGCTGGATTCAGTT 16485 29 100.0 32 ............................. GCAAAAAATACGATCTCGCCGGTGTTTTCAGT 16424 29 93.1 32 .....A.......C............... TATAACCCGCCGTCTATTTCTCGTGTTATTTC 16363 28 82.8 0 .........A..TC...........-..A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.7 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTATCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCTGGGCAGTTTTCCGCCCGGCCTACCTCATTCACGCATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGGATTACATCAGTATGTTTGGTTAACTCCTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGTTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTTGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93248-92609 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFQL01000009.1 Escherichia coli strain JML130 sequence009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93247 29 100.0 32 ............................. TTGTCGGCGGCGTGCATCATTGTGGCAACTTC 93186 29 100.0 32 ............................. GCTATGACGATCGCGCTTACCGTTGCATCAGT 93125 29 100.0 32 ............................. ATACTGCCGGATATAATCATTAACGTGCTCCA 93064 29 100.0 32 ............................. TCGCCCTGGATCTCGCTGGGGGTGTTCGATGG 93003 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 92942 29 100.0 32 ............................. CATTCCGTGCAGCGGTCTGAATAATTGCCGCG 92881 29 100.0 32 ............................. AGTAACGACGAAAAAATACAGGCACGGGCCAG 92820 29 100.0 32 ............................. GAAATAGCTTTTGCTGATCATCACGGTTTAAC 92759 29 96.6 32 ............C................ TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 92698 29 96.6 32 ............C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 92637 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTTTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //