Array 1 166003-166228 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000001.1 Clostridium sporogenes strain IFR 18/015 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 166003 31 100.0 34 ............................... AGTTTTCTTCTACCCTTAAGGGATTAGCTTTGTA 166068 31 100.0 35 ............................... CATTAATCCTCTGTTCTTTATCATTAGCTTTCTGT 166134 31 96.8 33 ..............................C ACAAAATTATGCTAACCTAGGTTTTTACAATAG 166198 31 80.6 0 ......T.A...T..G.A..A.......... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 94.3 34 GTTGAACAGTAACATAAGATGTATTTAAATT # Left flank : AAGAAAAACTGTTAGGAATGGATTAGTAAATAATATGCTTCCTACATTCAAAGATTTAGATACTGGTAAGGATTTTGAAACATTTTTCAAACATAATGGATATCAATACTCATATACAATAGTAGAATCAATAATCAATTTATTTGGCTATGACAAGTTGCATAACTTAATAAAATCACCAAATAGTTTTGTAGAAGTTTTTGGTATAACCGAAGATGAACTTCAAAATAAATGGATTGATTATATAAGAGTGAGTTACTTATTAGATTAGATGAAATAGAAATTCTTAATAATCATAGCGTATATATTATATCTAATTAAATTTTCCCAAGCGAATTTAAAATTAAAATCTATTCTAGCTATTGAAATATAAGGTTTAGAATAGGTTTTTATTATGTGTTTATAAAAAGATAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAGTCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATT # Right flank : TTGTACACAATTTGATTATATTGTAAATTGAACTAGGGTGCAGGAGAGGAAGGCTATGACTAAATTTATTTTCATGATTTTACCATTGCTAGCTATTGGAATTATAATTGTATTGATGATAAATAATATTAATAAGAAAAATAAAAAAAGAAATATTAAAGAAAATCAAAATATCGAGAAAAAAGAAGAAAATACAGAAGAAAATTATATGTCAATTGGAATGAGTTTAGGGATGTGCTTTGGTACAGCAATAGGTTCATCACTTATGCATACATTTGGGCACAGTTCTCTTACTTATGGTATATGCTTTGGAATGTTGGGTGGTATGCTTGTAGGGATGCATATAAAGAAAAAGTGATTTCTATTTGTTCTATTGTCTATTAAATATAATGGGAATATATTAGATGGTTATGCTGAAAGTATGCATTTAAGAAGGAATTAATGCAGTTTGGCAAAGTATATGTGAGAGATGTAGAATTACGTACACAGAAAAGGAGAAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 174839-175334 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000001.1 Clostridium sporogenes strain IFR 18/015 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 174839 30 100.0 36 .............................. ATTATTTTTCCTTCTGTAACATCTTTTAAGTATTTA 174905 30 100.0 36 .............................. TTAGCTATAACAAATAATCCCTCAGTACTTTCCCAT 174971 30 100.0 36 .............................. GTAGAAAAAAGCGAAAGAGAAATAGATAAAGAAAAG 175037 30 100.0 34 .............................. TAGTCTTCTTTAAGGTATTCTTTGCTCTTTTCAA 175101 30 100.0 41 .............................. AAAATTATTTTAGACCAAGGGGAAGATCCAGAAGATTATGA 175172 30 100.0 37 .............................. TTGATTAAATTATCTTCTGCATGTCCTGTTGTTATTT 175239 30 100.0 36 .............................. TGTGAATATCCATTAGATGTATTTAGATATTACGCA 175305 30 86.7 0 ...............A.T......A...T. | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 98.3 37 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TGGTCAAAGACGGCAAGTGCAAACATCAGCAACAAGCTGACAATAAGAACGGCAAACACCATCAGGAAGTTAGTTGGAATGTAATTGCTTTTCAAATTTCAGTTTATCAATTAGGAATTATTAAGCAAAAAATAGATAACTTATTAAAATACCGTATCATTCAAAAGTGAATATACGGTATTTTTTAGTGCAAAGTATAGATAGCAAATATGTTGTAAAGTTAGACATTAACATGATGCTTATTTAAACAGAGAATTCTGATCTTTGATTTGATGTGAATTGCTTGTTTTGACAGATGGGTAGGAGGGTTCTATTAATTAAATTTTTCCAGGTACAATAAACTTACAAACCTATTCAAGTTATTGAAACATAAGGGATAGAATAGGTTTTTATTATGTGTTTATGAAAAAATAAAATCACTTGGAAAACTTTCTATAAAATCTTGTAAAATCAATGTTTATGTGCTATTCTTGAAACTAAGGAATGGCTATTTTGCTATG # Right flank : TACGTACACAGAAAAGGAGTAAAATATCATGCGTAAATTATCGCAAGAGGAATTTAAGAGGATATTAGAGAATAGAAAACTAAAAGAAAGACTTGTTTTAAAAGAGATAGAACTTTTTGATATGGATTTCACAAGTTGGAATTTATCTAATATTGATTTTTCTTTGAGTGCATTCCATCGAGTTAAATTTGATTATGCAAATTTAGAGTGTGCAATGCTTCGATATGTAGATATGACTAGCTGTAACATTGAAGGTACAAATTTATATGCTGCAGTGTTAGAGTATGCCAAATTAGATGGTATTATTTTTGATAAAGATACAAAATGGTTTCATTTACATTGTCCAGAGAAGGGAGCATTTCTTGCATATAAGAAGTGTTTTAATGATCGTTTAGTACAGCTTCTAGTACCGGCAGATGCAAAGCGCACTTCGGCAACTTTACCTTCTTGTCGCTGTAATAAAGCAAAAGTTCTTACAATAAAAAGTTTTGATTATAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 947-1169 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000152.1 Clostridium sporogenes strain IFR 18/015 contig00152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 947 28 100.0 38 ............................ ATTCATATACAGATGTCCACAACGGTCTGTTTTGATCC 1013 28 100.0 37 ............................ ATTGACCTAAGCGTTCTGAAACTAATAAAGGTGTAAA 1078 28 100.0 36 ............................ ATATTATTTTTTTACTTTTAGGATCTAACTGTCCTA 1142 28 96.4 0 ........T................... | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 99.1 37 GTTGAACAGTAACATAAGATGTATTTAA # Left flank : TACAATGGTGGATTGGTACACCACAAAATGGTTTGTATGATAACAATATGAAAGAAGCTGTACGTCAATGGCAAATAAAAGCAGGTATATGGAGTACTTCAGGAGCAGATGGAATTATAAGAGAAAAAGATTGGAATAAGATACTAAGTTAAAATACTAAAATAAAAAAGATGTAGTTCCCATATATGGAATTACATCTTTTTTATTATTTAAAGAAACTTTTTATATTGGTGCTATGTTTTGGTGTGAGTGGCTTACTCCTTCAAAAATGGGAGAAAAAGTTTCATTAATGAGTGTAGCGTATATATTATATCTAATTAAATTTTTCCAAGTGAATTTTAAATTGAAATCTAATCTAGATATTGAAACATAAGGCCTAGGATGGGTTTTTGTTATGTATTTTTGAAAAATCAAAATCACCTGGAAAGATTTTTGTGAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGAGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTAATCTAGCTATTGAAATATAAGGCCTAGGATGGGTTTTTGTTATATATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATGGGTATATGATATTCTTGAAATTAAGGAATGGCCATTTTACTATGGTTGAACAATAACATAAGATGTATTTAAATGATACAGATTTTGAAGCAGCGTTAAAAGTACACCCAGTTGAACAATAACATAAGATGTATTTAAATAAATTTAACTAAAGAAGCATTTGACAGGGCTGCACAGTTGAACAATAACATAAGATGTATTTAAATGAAGTTATTAGTAAAAAAGATCCCCCTTGGAAAACAGTTGAACAATAACATAAGATGTATTT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1445-1934 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000152.1 Clostridium sporogenes strain IFR 18/015 contig00152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1445 30 100.0 36 .............................. GATACAGATTTTGAAGCAGCGTTAAAAGTACACCCA 1511 30 100.0 36 .............................. AAATTTAACTAAAGAAGCATTTGACAGGGCTGCACA 1577 30 100.0 36 .............................. GAAGTTATTAGTAAAAAAGATCCCCCTTGGAAAACA 1643 30 100.0 36 .............................. CGAGAATTATCTGTAAAAGCTTTATCCATAGTATTA 1709 30 100.0 36 .............................. GTTATTTCTGCTATCCATTTTTCACTTTTTTTATTT 1775 30 100.0 36 .............................. TATTAGGGTTAGGACCATATTCAAACAACCTTGCAA 1841 30 100.0 34 .............................. GATGATATACTAAAACAATTTTTCCCACAGACTG 1905 30 90.0 0 .......................C....TC | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 98.8 36 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : TGGTTGAACAGTAACATAAGATGTATTTAAATTCATATACAGATGTCCACAACGGTCTGTTTTGATCCGTTGAACAGTAACATAAGATGTATTTAAATTGACCTAAGCGTTCTGAAACTAATAAAGGTGTAAAGTTGAACAGTAACATAAGATGTATTTAAATATTATTTTTTTACTTTTAGGATCTAACTGTCCTAGTTGAACATTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGAGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTAATCTAGCTATTGAAATATAAGGCCTAGGATGGGTTTTTGTTATATATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATGGGTATATGATATTCTTGAAATTAAGGAATGGCCATTTTACTATG # Right flank : CAAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATAACAATAATTTTTTATTTAGTACTTATTTGGATTAAGGTATGGGATTTTTATTAACTAAAATATTTTTCAACATTAGCTTTAATTTTAGATTGTAATTTAGAGGATTATTAAAATTATAGCTCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGGCTATATAAATTGTTAGATACTAATTATTTAAAAACTTATTTAATGAATCATTATCGGTAAATAGTTTTTCTAAACTGCCGTATTTTTGTTCTAAACTTTTTCTATTATATTCATAGGATTCCTCTCCTATATTGTCTACATTAAATTTAATAATTTCAGCATTTGTTATAAGAGATAATAATACCACTGCATTCTTTTCTAAAAGCTTATTAGCTTTTTTATCACTCCAAAATTTATTATAATTTTCTTCACCTAATTTTTCATTTGCTTTATAGTTAAGGATTATTTCGTATGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 855-231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000082.1 Clostridium sporogenes strain IFR 18/015 contig00082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 854 30 100.0 37 .............................. CTGTATGGTGCTATTAAAACGATAAATATACTTAAAA 787 30 100.0 37 .............................. AACAATTCTTTAAACTGTTCCACTGTTATACTATCTA 720 30 100.0 37 .............................. TTTTTTCATCAACCAAAGATTCTAATCCTTTAGACCA 653 30 100.0 35 .............................. GATACAAGGAAATATGTAGGTATATATGGTGGTAA 588 30 100.0 34 .............................. AACAGCTGATTAAAGGGGATGGACCAATTAATCT 524 30 100.0 36 .............................. CCTACTGGATATACAGGAAGGCTAAAAAGAATATCT 458 30 100.0 36 .............................. GCCTGGAGCAATGAGTTTAGAAATTAGCACTAGAGT 392 30 100.0 35 .............................. TTAGCTATTGTTTGTTTAGATTTTCCTATTTGAAA 327 30 93.3 35 ......T.G..................... GGATATATTAAGTTCGGAAAGCAAATTAGTATATT 262 30 90.0 0 ......T.G....................A | TA [235] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.3 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ATCTCATATCCAATTAAATTTTTCCAAGTGAATTTAAAATAGAAACCTATTCTAGCTATTGAAACATAAGGCTTAGGATGGGTTTTTATTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGGTATAGGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGGTTGAACATTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGGGTATAGCATATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATGGGTTTTTATTATGTATTTTTGAAAAAATAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AATGGTAGTTGTAGCTTATGCTATAGCTATCATTTTTCATTTTGTGATAAATTTTTTAAACAAAATCAGTAATTTATAAATAAAAATTTAAAATAATTAATTTGTTCAATTAAAAAAATATGGACATATGATAACTTACATTTATAATATAAAATAATATATAAAAAAGTATAAAAGTGTAGGATAAAAAAAGAAGGAATTCTATTAATTGTAAGGAATATTGTAAGTATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1798-1439 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000082.1 Clostridium sporogenes strain IFR 18/015 contig00082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1797 30 100.0 36 .............................. TTCCATATTTATTAAGTATAGCTACATCTCCAGAAC 1731 30 100.0 35 .............................. TGGTATAGCAACAGACGAACGTACTGGTCTTGCGT 1666 30 100.0 37 .............................. AATAACATACTCTGTTACAATAAAGTATAAATCTCTG 1599 30 100.0 35 .............................. GATTCTTTATCTAGTTCTCTTTCTCTATCTTTTAA 1534 30 100.0 36 .............................. GTTTCTCTGTTATTGGTTTTTACTTTTGATTTCTTA 1468 30 86.7 0 ...G...A....................GC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTAAACCTTAACATAAGATGTATTTAAAT # Left flank : CAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTTGTTCTTTACTGATGGGAAAATTTCTACGAAACCTTGTAAAATCAATGGGCGTATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAATAATAACATGAGATGTATTTAAGCAGGGAATCCAAATCTCTGATTTGGTATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGAAGTTTCATTAATGAGTATAGCGTATATATAATTAAATTTTTCCAAGTGAATTAAAAATCAAAATCTATTCTAGCTATTGAAACATAAGGCCTAGGATGGGTTTTTATTATGTATTTTTGAAAAAATAAAATTACCTGGAAAGATTTTTGTGAAACCTTGTAAAATCAATAGGTATATGATATCCTTGAAATTAAGGAATGGCTATTTTGCTATG # Right flank : AGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGAGAGAAGGAGTTTCATTAATGAGTATAGCGCATATCTCATATCCAATTAAATTTTTCCAAGTGAATTTAAAATAGAAACCTATTCTAGCTATTGAAACATAAGGCTTAGGATGGGTTTTTATTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGGTATAGGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGGTTGAACATTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGGGTATAGCATATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATGGGTTTTTATTATGTATTTTTGAAAAAATAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 917-231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 916 30 100.0 35 .............................. TATAATTACATATGAGGTAATAATGGACTTATAAA 851 30 100.0 34 .............................. TAGATTACATTTACAGTAACTCCATTACCTGCTT 787 30 100.0 34 .............................. TTTATTATTTGCTCTGTAATGTTCATATATAATT 723 30 100.0 36 .............................. GCACAATTATTTAAGTTGTTGCATTTTATGCAACTG 657 30 100.0 34 .............................. CTCCATACATATTTATTATGTTTTTGAGTACCTA 593 30 100.0 37 .............................. TCTCTTAAAGTATACATTCCAACTCCATCAACTATAG 526 30 100.0 36 .............................. GTAAGTGTAATAATACCTAAGACAGATACAGAAACA 460 30 100.0 36 .............................. TTAAAAAGTATTAAAGAGGATTTAATAAAAGTTGCT 394 30 100.0 36 .............................. CCCATTAGAAGTGGTTAAGTATTTAGAAGATGTGTA 328 30 100.0 36 .............................. ATTTGAATCAATTAATAGTCAAGCAAAAGAAATGGC 262 30 96.7 0 .............................A | TA [235] ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.7 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACTACCCCCTATTTATAAGTGAAAAACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTATAAACCTATCTTAGCTATTGAGATATAAGGCTTAAGGTAAGCTTTTCTTATATATTTATAAAAAATTAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGCTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AATGGTAGTTGTAGCTTATGCTATAGCTATCATTTTTTATTTTTTGATAAATTTTTTAAACAAAATCAGTAATTTATAAATAAAAATTTAAAATAATTAATTTATTCAATTAAAAAAATATGGACATATGATAACTTACATTTATAATATAAAATAATATATAAAAAAGTATAAAAGTGTAGGATAAAAAAAGAAGGAATTCTATTAATTGTAAGGAATATTGTAAGTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 3443-1826 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3442 30 100.0 36 .............................. ATATTTAGATAAAAGAATAAGTTATACATACGCTAG 3376 30 100.0 37 .............................. TTAGGTGTCATTATCGAATTGTTTACAGCTACTGCAT 3309 30 100.0 36 .............................. CATCTTCGGTCAAATGATCTACCCTATCTAAGTATT 3243 30 100.0 36 .............................. CCTTAGCATGAGGGCTGATGATGATGGATTTATTGG 3177 30 100.0 38 .............................. GATTTAATTATGTTTAACTTCTCTTCATGTTTCTCCAA 3109 30 100.0 36 .............................. CCAACTTTAAATGCTTCTTCTGATTTTATAAAATTA 3043 30 100.0 35 .............................. AGGAATTGTATTATCTGTTTTTCTTTTTCTTTAGA 2978 30 100.0 37 .............................. AATACTAACTCTTCTTGCTTTAGTATTTGAAATGTCT 2911 30 100.0 36 .............................. CTATTAATGATGGTTTTATTCTGTGAACTTCGCCAT 2845 30 100.0 35 .............................. TTATAATTCTTCAGCTCATTTAACTGTCTTTTTAA 2780 30 100.0 34 .............................. GACATTTTGTCTTTAATATCTTCTAGTTCTTTTT 2716 30 100.0 36 .............................. TGTCTTCTATATCTTCTTTAGGTCTTTTATTCCTAG 2650 30 100.0 37 .............................. CCAAACATATTAATCACTCCTTAATATATTTTTTATA 2583 30 100.0 36 .............................. ATTGTATTTGGATAGGAGCAATTCTAAGTTATGTAA 2517 30 100.0 36 .............................. AATGTTCCGAATCTCCAAACCTCTTTACCTTCAGGG 2451 30 100.0 37 .............................. GCGGGACAAGAACTAATAATGAAACCACAACAATTTC 2384 30 100.0 38 .............................. AGGGATATAATGTGGACATTATAGCTAACTCAGAGGAT 2316 30 100.0 36 .............................. GTTAAATATCTATACTTTCCATTACCTAAATCAATT 2250 30 100.0 36 .............................. GATGTAAAGGATGAATACCAGCTGAGCGAACTAATA 2184 30 100.0 36 .............................. GAGTATACAATATATCAACATGAATTTATAGCGTTA 2118 30 96.7 36 ........A..................... GTAAAAAGGATAAAGACTACGATCCTTTTATACTAG 2052 30 93.3 36 ......C........A.............. ATGTTTGCAGTAACTGAAGATATAGAAATAAAAGAG 1986 30 93.3 35 ...............A....A......... TCACTTAGCTGACATTTACCGCAAAAGTCTGGTAA 1921 30 96.7 36 ...............A.............. AATAATGAAGGATTTGCTACAGTTGCAAGTGATTTA 1855 30 83.3 0 ......C.T..............C.G...A | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 98.5 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TCTCTTTTCAGTTGAACATTAACATAAGATGTATTTAAATTTCCGAAGTTGATAAAATTTTATGGTATTTAGAAAGTGTTGAACATTAACATAAGATGTCTTAGAAGTATCATTATCTATTTTATTAACTTGTTGAACCTTAACATAGAATGTATTTAAATTAGTGGAATAATACAATTTGATTGCCAACCATTTGGTTGAACAGTAACATAGTATGTATTTAAGCAGGAAACCCCAAATCTCTAATTGGGTGTGAGTCACTTACTCCTTGGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTAAATTTTTCCAAGTGAATTAAAAATAAAAACCTATTCTAGCCATTGAAACATAAGGTCTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAATTCTTATGAAACCTTGCAAAATCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAATATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAAAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATGTAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 5055-3717 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5054 30 100.0 37 .............................. GAAAATATAAAAGCAATACCTAAGATGCAAGAAGATA 4987 30 100.0 36 .............................. AATCAATCAAAGCACCTCCTAAAGATTTAATACTAC 4921 30 100.0 36 .............................. AAACTTAGGAAAAATAAAGGATTAACTTTAGAAGAA 4855 30 100.0 37 .............................. GTAGATATATTTAATGCATTTGCTATTTTTTCTATAG 4788 30 100.0 36 .............................. CTTATTTTTGCTGTATTATCTAACATTTATAACTCC 4722 30 100.0 34 .............................. TATATAAAAGGTAGCATTGTAGCCTTTGTTTTAT 4658 30 100.0 35 .............................. TTATAAACATTCCACTTATATTGCTCTCCAGCTTG 4593 30 100.0 36 .............................. TTGTAATAATACACTAATACATTTAAGGTACAAGAA 4527 30 100.0 36 .............................. TCTATATCTATATCAATAGAATTAGAATGGCTAGGA 4461 30 100.0 36 .............................. TATTCATTTAAGGGATACCATAATCCTAATTTAATA 4395 30 100.0 35 .............................. GTTTCTGTAACTTTATTTCCTTCTAACAATGGCAG 4330 30 100.0 36 .............................. TTATCTATAGTTTTAAATTGCAATAATTCTGGTATC 4264 30 100.0 37 .............................. TAGCTAAAGATACAGCGATTGATTATTACAAAAATTT 4197 30 96.7 34 ........T..................... ACATTTCCAGTATAAAGTCCAGAAATGAATTTAT 4133 30 96.7 37 ........T..................... TCCCAATCCTTTGCTTCTGCCTTGCCCGAATTTATCC 4066 30 96.7 37 ........T..................... GGCAATGGTTAAATCAAAAGGATTAGCAGGTACAATA 3999 30 96.7 37 ........T..................... CTGAAAGTAAGAAGAATAGGTTTCACTTCTCTTTTCA 3932 30 96.7 37 ........T..................... TTCCGAAGTTGATAAAATTTTATGGTATTTAGAAAGT 3865 30 83.3 24 ........T.............C..AG..G TATCATTATCTATTTTATTAACTT Deletion [3812] 3811 30 86.7 35 .......CT.......GA............ TAGTGGAATAATACAATTTGATTGCCAACCATTTG 3746 30 86.7 0 ................GT..........GC | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 97.2 35 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TGAACATTAATATAAGATGTATTTAAATGAAGGTGCTTCCATACCAAAATGGAGTTCTTTTATTGTTGAACATTAACATAAGATGTATTTAAATGAGAAGAAGATAAAGAATTTTTAAGATTAAAGTATGGTTGAACAATAACATGAGATGTATTTAAATAAACCACCGAAACCCATTATGCTAGGTTGTTGAAGAAATTGAACAGTAATATGAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCCTGAGTCGCTTACTCCTTCGAGAATGGTAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTCTAGCTATTGAAATTCAAGGCTTAGAATAGATTTTTATTATGTATTTATAAAAAATAAAAATCACCTGGAAAACTTTCCATAAAACCTTGTAAAATCAATGAGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGGAAACCCCAAATCTCTAATTGGGTGTGAGTCACTTACTCCTTGGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTAAATTTTTCCAAGTGAATTAAAAATAAAAACCTATTCTAGCCATTGAAACATAAGGTCTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAATTCTTATGAAACCTTGCAAAATCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAATAGTAACATGAGATGTATTTAAATATATTTAGATAAAAGAATAAGTTATACATACGCTAGGTTGAATAGTAACATGAGATGTATTTAAATTTAGGTGTCATTATCGAATTGTTTACAGCTACTGCATGTTGAATAGTAACATGAGATGTATTTAAATCATCTTCGGTCAAATGATCTACCCTATCTAAGTATTGTTGAATAGTAACATGAGATGTATTTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 6612-5328 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6611 30 100.0 35 .............................. TCACTTATTGGGACTTCTTTTATTTGCCCTTTTTT 6546 30 100.0 36 .............................. GCATCTATTTTTGTTAATCCTCTTGCCCATTGTGGA 6480 30 100.0 36 .............................. TTAATTTTTCTTCTCTAACTCTTTGATTTAAATTCT 6414 30 100.0 34 .............................. TATATATACTCTGCAAAACAGGTAATATCTTTAG 6350 30 100.0 36 .............................. CTTTCTATTAGTTTTCTTGAAAGGAGGATATAACCC 6284 30 100.0 38 .............................. TTTAGAATCTACCTCATCTTCATTTCTTCTTTCCTTAT 6216 30 100.0 37 .............................. AACCTTAGCATATCTTTTAGATCTTTTATTCTTGTTA 6149 30 100.0 37 .............................. TAGAATAAAAAAGAGGACAATTCCAATTAAGGAACGT 6082 30 100.0 36 .............................. ATTTACTGAAACCTTTAATTATGCCTATAATTAAAT 6016 30 100.0 35 .............................. GGAGATAAAGTAAGTGTTAATGGACAGATATTGTA 5951 30 100.0 36 .............................. ATATTCTTTTAGTGATAATAAAGAAAAGAGACAATT 5885 30 100.0 36 .............................. GTTCCATATAAGTATTAGATTTTAATTTTTGTACTC 5819 30 100.0 36 .............................. TAGCTTTAGCACTAGGTATATTATTTAAATCACTTA 5753 30 100.0 34 .............................. AGAAACTAAGGAAACTAATTTAACATTATTACTT 5689 30 90.0 36 ......C.T......A.............. GTATAAATGTACCATATTTTATTGCTTGAATTTAAA 5623 30 90.0 37 ......C.T......A.............. TCATAAGTAATACTAGTTTCATTAATAATTTCATTAA 5556 30 86.7 36 ......C.T...T..A.............. GAAGGTGCTTCCATACCAAAATGGAGTTCTTTTATT 5490 30 90.0 36 ......C.T......A.............. GAGAAGAAGATAAAGAATTTTTAAGATTAAAGTATG 5424 30 93.3 37 ......C.A..................... AAACCACCGAAACCCATTATGCTAGGTTGTTGAAGAA 5357 30 83.3 0 A.....C.....T...............GC | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 96.7 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TTGAATAGTAACATGAGATGTATTTAAATAAATTATGACAATATAAAGGTATTTAAATCTGCTTTGTTGAACATTAACATAAGATGTATTTAAATTCTGTAGTTGTAATGTTTTCTCGTTTCCCATTCAAGTTGAACATTAACATAAGATGTATTTAAATTAATATATGTCTTTTTCGTCTGTATATGGTATATTCCGTTGAACATTAACATAAGATGTATTTAAGCAGGAAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATAGGTTTTTGTTTTGTATTTTTGAAAAATTAAAATCACCTGGAAAGTTTTCTACAAAACCTTGTAAAATCAATAGGTATGTGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGGGAACCCAAATCTCTGATTTGGCCTGAGTCGCTTACTCCTTCGAGAATGGTAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTCTAGCTATTGAAATTCAAGGCTTAGAATAGATTTTTATTATGTATTTATAAAAAATAAAAATCACCTGGAAAACTTTCCATAAAACCTTGTAAAATCAATGAGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATGAAAATATAAAAGCAATACCTAAGATGCAAGAAGATAGTTGAACAGTAACATAAGATGTATTTAAATAATCAATCAAAGCACCTCCTAAAGATTTAATACTACGTTGAACAGTAACATAAGATGTATTTAAATAAACTTAGGAAAAATAAAGGATTAACTTTAGAAGAAGTTGAACAGTAACATAAGATGTATTTAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 5 8759-6885 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8758 30 100.0 36 .............................. TTTTCCATTCTGCACCTCTCTTATTTAAAAATAGGC 8692 30 100.0 38 .............................. CAAGAAGCTGTTAAAAAGAGTTTAAAAGCTCCAAGCAC 8624 30 100.0 34 .............................. GTATTTTTAGAAGTATCTGTGTCTAGTCGATTAA 8560 30 100.0 35 .............................. CCTGTATCTTTTACAGCTTCATTTCTTATTAAACC 8495 30 100.0 36 .............................. TAATCTTAATAGTGGAATGCCACTACCAGTGCTACA 8429 30 100.0 34 .............................. ATGTTTTTAAACTTAAGCCATCCAATTTCTTAGC 8365 30 100.0 36 .............................. ACCACCTTCAACTTCCTCTAATAATTCTTCTAGTAG 8299 30 100.0 36 .............................. GGCTATTATATAATTTATACTTATCTTCTTCGGGTT 8233 30 100.0 36 .............................. TTGATATAAATATGTTGTAACTCTTTGTTTTCATTC 8167 30 100.0 35 .............................. TAGCAAGGGCAAAACAAAGCACCTTGAAGGTTCTT 8102 30 100.0 37 .............................. TTTTTTATTAGCCACTCCATGGCCTCTGTGTTTTTTT 8035 30 100.0 37 .............................. CAACTAAATTGGTCGTATACTGCTGATGTATCATCAA 7968 30 100.0 35 .............................. GAGATTTGCATTTGCAAGGAGAGAAGGTTTGAAGA 7903 30 100.0 38 .............................. TTAATTTCTAAAGGACTGCCTGTAAATATAAATCTTAT 7835 30 100.0 36 .............................. TCAGCATATATTGGCAATACTTGCTTTTCTGGTCCC 7769 30 100.0 36 .............................. TCTTTCTTTACACTTTTATATGCTGCTTTATATGCT 7703 30 100.0 35 .............................. CCATTATTCCATTTCTTAATATCAATAGAATCTCT 7638 30 100.0 36 .............................. CTAAATCTTTAGACCAAGCTCTAGAGCTAACAGGAA 7572 30 100.0 35 .............................. ACCGCTTTTGCGCTATCATTCGCTTGCATATATAA 7507 30 100.0 36 .............................. ATAAATATTGGAGCATTGATATTATAGTGATTGCAC 7441 30 100.0 35 .............................. TTTAATTAGTAGTTATGAAGCTGAAATATTGAATT 7376 30 100.0 35 .............................. GGTGTTCATAGGCAAACAATATCAAGAATTGAAAA 7311 30 90.0 38 ......T.G......G.............. AATGAATAAAGCAAGAAGAAACTTTACCATTTAAATCT 7243 30 90.0 36 ......T.G......G.............. TATCTTCACTTAAAGTTTCTTTTGAATCATTAAAAA 7177 30 90.0 35 ......T.G......G.............. TGCATAAACATTCTTGAAGAATTAATATGGGACAT 7112 30 90.0 36 ......T.G......G.............. AAATTATGACAATATAAAGGTATTTAAATCTGCTTT 7046 30 100.0 35 .............................. TCTGTAGTTGTAATGTTTTCTCGTTTCCCATTCAA 6981 30 100.0 37 .............................. TAATATATGTCTTTTTCGTCTGTATATGGTATATTCC 6914 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 98.4 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : TGTATAAGGGATCTAAATACCACATACTTATATCATCTTTGTACTTGTCTACCTTAGTTTCATAATGATTTCTACAATATTTAGGTTCTTCTTTTAAGTTTATTAATCTTTTCACTGTATTCCTAGACATTTTCAATTGCCTTGCAATCTGCCTTATCGGCACTCCCTGCTTAAAAAGTCTATTTACAGTTATCCAGTCCTGCACTTCTTTCACCCTAGCTTTTCCCCCTAATCTTTTATAATATGATTAGGGTACATTATTATTTTTTGTGGGTCAATTTTAAGTGTTAAAAGTGGGTCAGTTTTAATTATAAATCAACAATTTTTCCAAGTGAATTAAAAATAAAAACCTATTCTGGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTTTGTATTTTTGAAAAATTAAAATCACCTGGAAAATTTTCTACAAAACCTTGTAAAATCAATAGGTATGTGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGGAAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATAGGTTTTTGTTTTGTATTTTTGAAAAATTAAAATCACCTGGAAAGTTTTCTACAAAACCTTGTAAAATCAATAGGTATGTGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGTTGAATAGTAACATGAGATGTATTTAAATTCACTTATTGGGACTTCTTTTATTTGCCCTTTTTTGTTGAATAGTAACATGAGATGTATTTAAATGCATCTATTTTTGTTAATCCTCTTGCCCATTGTGGAGTTGAATAGTAACATGAGATGTATTTAAATTTAATTTTTCTTCTCTAACTCTTTGATTTAAATTCTGTTGAATAGTAACATGAGATGTATTTAAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 6 22362-21279 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 22361 30 100.0 35 .............................. GATAGAAAAAGCATACCGCTTAATTGGTGTAAAGA 22296 30 100.0 35 .............................. AGCCAGTTATCTATCCTCTCCTTTTCTACTTTTGC 22231 30 100.0 35 .............................. AAGATATTATACAACGGAATAGTATCGAGTGCCCC 22166 30 100.0 35 .............................. CTCCTTATCAATTACTATACTTATATTATACTATG 22101 30 100.0 37 .............................. CTTGACATACTAATTTCTCCTTTTTATAATATCTTTC 22034 30 100.0 36 .............................. ATCATTTTATTACCTATACTTCCTAGCATGGTTCTA 21968 30 100.0 36 .............................. TTTTTGTCCATAATTTTATCCGCCTCCATTTCCTTT 21902 30 100.0 36 .............................. GAAGAACGTTCTTTATGATTACATCCATGGTAACAA 21836 30 100.0 36 .............................. GGGAAATAATGTGCTCCTGTTATCTTTGCTTTGTCC 21770 30 100.0 35 .............................. TTAAATCTTGATAATTTTTGCTTAAATTCTGCTAG 21705 30 100.0 36 .............................. TAGGTTAGTAGCATTAGCATTTATACCAAATCCAGA 21639 30 100.0 37 .............................. TCTGTCATGTGTGGTGCTAATTCTCTTACTGTTGCTA 21572 30 100.0 36 .............................. CAGTTTTACTAATGCAAAAGTTTGTGATGATGTTTG 21506 30 100.0 36 .............................. CTATCCTTAGCTTTTGCATCTTTAACCTTCCCTTTT 21440 30 100.0 36 .............................. TAATTTAATATTAAACAGGATTCACAATCCCATCCA 21374 30 100.0 36 .............................. CAATAGTAATACCAACCATTTTCTTGACAGTTATCT 21308 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : GCCGCTGAACATTAACATAAGATGTATTTAAATGATTATATTAGATGGGCAAAGGAAGTGCCTGGAGGCTGAACATTAACATAAGATGTATTTAAATCTTAATAACTCCATGCCTGCTTTTGTGTAAGCACAAGCTGAACATTAACATAAGATGTATTTAAATATTTCAATTTTTATTAAATTGAATATATGTATTTGTTGAACAATAACATGAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAACTTATTCTAGCTATTGAAATATAAGGCTTAGGATGGGTTTTTATTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTGAATGAGTATGAAAAATTAAATGTAATTTAACCATAACATATGATGTGAAATCACTATAAAGATTATAATATTTATAGTGATTTTTTAATATTTAGAAAAATAATATGCAACATTATAATTATATGGAAAATGTTGATTAAATATATAAAATGTGGTAATATGGAATAAAGGTTAAGAAAATTGTCAATATTCAATAAAATACAAGTGCAGACTGGAGGTGAAATAATGAGAGTATATGAATTAACACTAAAGATATTTCTCCTTAAAGATTTAACTATGGACAAGTCTTATGAAAAATTAACAGAATTAATTGACAAATCTTTATGTAAAGATGATGAATTATTAGCTTTACATAATGAAAATAAGTATAAATACTATACTTTTTCATTACCTTATAAATTGGAAAAAGACAAAATATATAAAGCTGGAAATATATATTCAGTAAAAATAAGAACTATTGATGAGAAAATATTAAAGAATTTCAGAACTCAGTTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 23587-22635 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 23586 30 100.0 36 .............................. ATATTAGACATTATGAGATTTATGCTGAAAGTCCTA 23520 30 100.0 36 .............................. CTGAATTCTTTTAATCTTGATGGTGAAGGTATGCGA 23454 30 100.0 36 .............................. CTAGAAGAAAGGGGAATTAATTTAACAAAAGCAGAG 23388 30 100.0 36 .............................. AGATTTATTATTAGATGAAACGAAAGAAGTTATTGA 23322 30 100.0 35 .............................. CATTTTCATGTGAATAAACTAATTCATATAATGAC 23257 30 100.0 38 .............................. TTGAAGTATTTTTTGTAATACATATTTAAGTTTGAAGT 23189 30 100.0 36 .............................. GTAACAGAATTTGAGAACCAATGTAAAGAACTTAAC 23123 30 100.0 36 .............................. GGAGATTATATCGGATCTAACACAAAAATTTAATCT 23057 30 100.0 35 .............................. TTAACTAAGATGTTGTATTTAAGGCAGTTAGCAAG 22992 30 100.0 36 .............................. ATGAATGGGCTAAAATAAGCCATTTATATTTCCTCC 22926 30 100.0 38 .............................. CCTTTATGGAATGTACCTCCTAGACCAGTCCTTGAGCC 22858 30 100.0 34 .............................. GATTATATTAGATGGGCAAAGGAAGTGCCTGGAG 22794 30 100.0 36 .............................. CTTAATAACTCCATGCCTGCTTTTGTGTAAGCACAA 22728 30 100.0 34 .............................. ATTTCAATTTTTATTAAATTGAATATATGTATTT 22664 30 83.3 0 .T......A......G............GC | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.9 36 GCTGAACATTAACATAAGATGTATTTAAAT # Left flank : AGTTGAACAATAACATAAGATGTATTTAAATAAACTCATGTTTACCACAGGATAATTATCTTTAGGTTGAACAATAACATAAGATGTATTTAAATTTGGTTAATCCATAGGATAATCCTATAAAAATGCACGTTGAACAATAACATGAGATGTATTTAAATTTTTATTGAGTATACCTTTCTGCCTTAAAAAAGTAGGTTGAACAATAACATGAGATGTATTTAAGCATGGAACCCAAATCTCTGATTTTGCGTGAGTCACTTACTCCTTGGAGAATGGCAGAATGAGTTTCATTAATGAGTATAGCATATATCTAATTAAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATAGGTTTTCGTTATGTATTTTTGAAAAATTAAAATCACCTGGAAAATTTTCTGTAAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAACTTATTCTAGCTATTGAAATATAAGGCTTAGGATGGGTTTTTATTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATAAGATGTATTTAAATGATAGAAAAAGCATACCGCTTAATTGGTGTAAAGAGTTGAACATTAACATAAGATGTATTTAAATAGCCAGTTATCTATCCTCTCCTTTTCTACTTTTGCGTTGAACATTAACATAAGATGTATTTAAATAAGATATTATACAACGGAATAGTATCGAGTGCCCCGTTGAACATTAACATAAGATGTATTTAAATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 8 24543-23860 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 24542 30 100.0 35 .............................. ATAGTTCCATCTTCTTGCCATTGTTTCAATTTTCC 24477 30 100.0 36 .............................. ATTAAAATATGATCCACATCTTGAAATTTATATTGA 24411 30 100.0 35 .............................. ACTATCTCACCTGCCTTATTGTTCCTTTTACTTTT 24346 30 100.0 36 .............................. TCTAGTAAACTTAAATCAACTGTTTTATTATTTAAT 24280 30 96.7 36 ......T....................... GCTATAGAGTTACCACTGGACGGACTTGATACGTGG 24214 30 100.0 34 .............................. ATTGCTTTTTGAATATCTGCTGCACAAGTAGCTT 24150 30 100.0 35 .............................. AATTTTTCTCTATATGTTCCTTAAGGTTTTTACCA 24085 30 96.7 34 ........A..................... AAACTCATGTTTACCACAGGATAATTATCTTTAG 24021 30 96.7 36 ........A..................... TTGGTTAATCCATAGGATAATCCTATAAAAATGCAC 23955 30 93.3 36 ........A......G.............. TTTTATTGAGTATACCTTTCTGCCTTAAAAAAGTAG 23889 30 86.7 0 ........A......G............GC | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 97.3 35 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACTACCCCCTATTTATAAGTGAAAAACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTATAAACCTATCTTAGCTATTGAGATATAAGGCTTAAGGTAGTCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGTTATTTTACTATG # Right flank : ATGGAACCCAAATCTCTGATTTTGCGTGAGTCACTTACTCCTTGGAGAATGGCAGAATGAGTTTCATTAATGAGTATAGCATATATCTAATTAAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATAGGTTTTCGTTATGTATTTTTGAAAAATTAAAATCACCTGGAAAATTTTCTGTAAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGCTGAACATTAACATAAGATGTATTTAAATATATTAGACATTATGAGATTTATGCTGAAAGTCCTAGCTGAACATTAACATAAGATGTATTTAAATCTGAATTCTTTTAATCTTGATGGTGAAGGTATGCGAGCTGAACATTAACATAAGATGTATTTAAATCTAGAAGAAAGGGGAATTAATTTAACAAAAGCAGAGGCTGAACATTAACATAAGATGTATTTAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 9 25986-25430 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 25985 30 100.0 36 .............................. TTTGTTATTTTTCAGCATACATCCAATTAAATTGAA 25919 30 100.0 35 .............................. TGAACCGTTGATTTTATAGGATTTATACCTAATAT 25854 30 100.0 35 .............................. TAGATCTTATAAGAGAATTAAAGGAGCCTTAAGGC 25789 30 100.0 36 .............................. TCAAATAAAAAAGGTGTTTCATGATACAAATTATCT 25723 30 100.0 35 .............................. CCTCGTTCACTAATTAATTTATAAACTTATTATAT 25658 30 96.7 36 .............................C TTTGTAATAGCAGTATTGTGTCTAGCAAAAATACTA 25592 30 96.7 37 ......C....................... GCCAATTGTGAAGTTGTAGTCTTCTGTAGTTTATCGT 25525 30 86.7 36 .C....C.T......A.............. ACATATGGGGGTGTCATAGAGAATGAAGCTAACTGA 25459 30 76.7 0 A.....C.T..G...........C.G...A | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 95.2 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : ATTAACATAAGATGTATTTAAATTTATCTACACAAATTGTAATACTCTTAGGCATATGGTTGAACAGTAACATAGGATGTATTTAAATGCAACAATAGGGAGCAACAAGGCTAAGGAACTTGAAAAGTTGAACAGTAACATAAGATGTATTTAAATTCTATCATCTGCTGTGATATATAGGATATTTTAAAGTTGAACAGTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGAGATAGGAGTTTCATTAATGAGTATAGCGTATATCTCATATCCAATTAAATTTTTCCAAGTGAATTAAAAATAGAAGCCTATTCTGGCTATTGAAACATAAGGTCTAGGATAGGTTTTCGTTATGTATTTTTAAAAAATTAAAATCACCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATAGGTATGTGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : AACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAATATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAAAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATGTAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACTACCCCCTATTTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 10 27647-26265 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================================================= ================== 27646 30 100.0 36 .............................. CTCATATAAATGCCTCCTAGTTATTTTTTATATAGT 27580 30 100.0 36 .............................. CTGTAAGGACTTACAGAATATATTTTATATCTTTCT 27514 30 100.0 36 .............................. CTTTTAAACCTTTGATAATTTTCATTTTTTATACTC 27448 30 100.0 37 .............................. GCTGTTTGTAGCTTTCTTTAGCTTTCTTAACTTCCAA 27381 30 100.0 36 .............................. AACTAGGTTTTTTACTTAAATCATATCCTTCTTGTG 27315 30 100.0 69 .............................. TTATCTCTTTTGGGTTGACCTGTGATATTTAAATACAAAAGGATTAGATAGAGTTACAGGACCATTAGC 27216 30 96.7 37 ......T....................... AGAAGATTTAATCAATACAGTATGGGAAGGTAATATA 27149 30 83.3 233 .C......A......G............GC AGGGAACCCAAATCACTGATTTGGTGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTAAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATGGGTTTTTATTATGTATTTTTGAAAAATCAATGGATATATGATATCCTTGAAAAAAAGGAATGGCTATTTTACTATG 26886 30 93.3 36 ........A.......G............. GCTTATATGCGAAATGAGACACGTAAAATACAATTT 26820 30 93.3 35 ........A.......G............. CCCAAATAGATATCTTGGCCAAAAATTGCATTTGC 26755 30 93.3 35 ........A.......G............. GATGTAAAGGATGAATACCAGTTGAGTGAATTAAT 26690 30 93.3 36 ........A.......G............. AAATTCTACAGATGTAAATAAACCATACATAGATGT 26624 30 93.3 36 ........A.......G............. ATAACATAAAAGCACTTTACTTTAAGTAAAGTGCTT 26558 30 96.7 36 ........T..................... TTATAAGAGTTTCTGTGAATAGTAAATTCAATATAG 26492 30 96.7 35 ........T..................... TTATCTACACAAATTGTAATACTCTTAGGCATATG 26427 30 96.7 38 ................G............. GCAACAATAGGGAGCAACAAGGCTAAGGAACTTGAAAA 26359 30 100.0 35 .............................. TCTATCATCTGCTGTGATATATAGGATATTTTAAA 26294 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================================================= ================== 18 30 96.1 50 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TTGGAAGGCACTTAATAAGGTGTCTTTTTTAGTTTACAAGGGTAAAGTAGGTATTATTATGTAGGTTGAACATTAACATAAGATGTATTTAAATGGGATTAATCCAGAGCAGTCTAAACAAACTTTTAGAAAGTTGAACATTAACATAAGATGTATTTAAATCAATATGACTCCTTATAGGATTTAAACCAGTTGTTGTTGAACAATAACATAGGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAGTTGAATTTTTCCAAGTGAATTTAAAATAGAAACATATTCTGGCTATTGAAATATAAGGCCTAGGATGGGTTTTTATTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATGGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGAGATAGGAGTTTCATTAATGAGTATAGCGTATATCTCATATCCAATTAAATTTTTCCAAGTGAATTAAAAATAGAAGCCTATTCTGGCTATTGAAACATAAGGTCTAGGATAGGTTTTCGTTATGTATTTTTAAAAAATTAAAATCACCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATAGGTATGTGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGTTGAATAGTAACATGAGATGTATTTAAATTTTGTTATTTTTCAGCATACATCCAATTAAATTGAAGTTGAATAGTAACATGAGATGTATTTAAATTGAACCGTTGATTTTATAGGATTTATACCTAATATGTTGAATAGTAACATGAGATGTATTTAAATTAGATCTTATAAGAGAATTAAAGGAGCCTTAAGGCGTTGAATAGTAACATGAGATGTATT # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.28, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 11 40652-39694 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWUJ01000023.1 Clostridium sporogenes strain IFR 18/015 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 40651 30 100.0 37 .............................. TGGAAAATAAAGTTATAAAATGTAATAATGCGACATA 40584 30 100.0 36 .............................. TAGGCTACACTTCTACACATTCCCATTTCTATACCT 40518 30 100.0 37 .............................. GAAATAGGTTTTAATGGCCTTAAAAAGAAATTTACTA 40451 30 100.0 34 .............................. AACAAATCCACAGATGGGACTGCCTCTTGTTTAA 40387 30 100.0 36 .............................. GTTCCACCTATAGGTAAAATTTGTACAAAAAAAGAA 40321 30 100.0 36 .............................. TTGTTTTTAATTCATCTTTTGGGATTCTTGCTGTAT 40255 30 100.0 38 .............................. TTAGGTGGAGGTTACGCAGGTGCGATAGGTAGTAGTAT 40187 30 100.0 35 .............................. CTTCTAAATACTAATTTTACCATAAAACAACCAAA 40122 30 100.0 36 .............................. GAGGTATATTCTTTAGATTCAGAATTAAAATATAAA 40056 30 100.0 37 .............................. GATTTATACGGATTCTTCTTTTTTGGATATATTTATT 39989 30 100.0 36 .............................. ATTGATATTGCTACTTTAAATTTTCTCGCTCTAAAA 39923 30 100.0 36 .............................. GGCTTTAGAGCTAATGGGAAAGTGCATGTATTTGCG 39857 30 96.7 36 ...A.......................... TCTATTGGCCAGTTTTGACCATATAAAGCTGGATTG 39791 30 100.0 36 .............................. AACCATTGTATTATTAAATTATATTTACTAGCATAA 39725 30 83.3 0 ...............G....CA.A..C... | T,A [39696,39700] ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.7 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : TTAGGGACTTCCAGCAATTAAAGGAGTTTTGGATAGAGATAATATCTATCACTCTACACTCTTTACGAATGTAGGGAGCTTTTGTTTCAAAAATATACTTTGATCTGTATTCATTTATATTTCAGTATATTTTTAACAACTAATTAGTTGCTCCATAAAGTTTAATTACAGTAATATGATATGAATTTACAAAAAAAAGGTTACACAAGAAATTTTGGATAGGGTGGAAGAGAAGAAAAGGCTTGGTCACTTATTCAATCTTAAAAATAATAAGGTAATAAACCTACATTAAATATAAAATTTTAGAGAGTTATTATTTCAATTTTTCCAAGTGAATTAAAAATAAAAACCTATTCTAGCTATTGAAATATAAGGTCTAGAATAGGTTTTTATTATGTATTTATAAAAAATTAAAATCACCTGGAAAAATTTTTATGAAACCTTGTAAAATCAACGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : ACAGACGAATTTAAAAATACAATAGTAGAGTTTTATAACTCTGGAAAAGGTCCATCAGAATTAAGCAGTGAATATGCCATATCAAAATCAACAATAACTGGATGGATAAAGAAAATGCAGCCCTTAATGAAAAAGGTACTGCCAGATAACGATTTTTTTATTCGCTGTCTGGCAGTATATTTTTCTACATAAAACACATAATAGCCTATGAAAGCATTTGCCAATGGTATTGAGCTTTCTAAGAAAGCAGGGGATAACTCAATTCTCTATATTTTAGAAGTTTCCCTGTATGACTACTTGAACATTTCATTATATCTGACACTGTTCCTTGTATCATAAGTTTGCCACCATGATCTCCACCTTCTGGACCTAAATCTATAATCCAATCAGCATTTTTGATTACATCAAGATTATGTTCCACTAAGATTACAGTATTGCCATTTCCAGTGATTTTTCCTAGTATATTTAATAAATTTTGAATATCACTAAAATGTAATCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //