Array 1 182706-182319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWT010000001.1 Neisseria elongata subsp. nitroreducens strain Nel_M001 Scf_1_541257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 182705 36 100.0 33 .................................... ATAATCAATGGCTGATAGTCTTCCAAAGTATCG 182636 36 97.2 33 .......................G............ GCAGTGATGAGTTCCTTACGGATACCGTAATTG 182567 36 100.0 35 .................................... ATACAAACGTTGACATAATCATTATCTTCTCATTG 182496 36 100.0 35 .................................... TCCTCAATTTTCTCTTTTTTGGATTTTTGAACTTT 182425 36 94.4 35 ....................T.............G. TTTCAGACGGCCTCAAGCCTAGGCCGTCTGAAAAT 182354 36 69.4 0 ..T.T..A..C..T...GT.T.........A..A.T | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 93.5 34 GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Left flank : TGTTTCATAAAAACCAACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCGAAAGCAAGCTGGCAGACCCGCTAAGGCAAGTGATCGACCAAAGCCTCAACATGGGCAAAGTGCGCCGCGTCCTGATTCTGTCGCCCGTCATTAAAGACAATGCAAAGCCGCAGCAATGGACGGAATTCGAGCGCAACTGCGCCGCCAAAAACATCCAAATCATCATCGCCCGCGACAAAGAAATGCTGAAAGCCCTGACAAGCTGACATCAAGGTTTCTTGTCCATTGAAACGCCGTCTGAAAATGTTAAAAAACATTGTGAAATGCAAAGTAGACGGCTATAATCCGCCTTACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATACTAACCTTTCTTAACCATATAGAAGCCTGAAAATAATGAAATTTTTTGACTGAATGCA # Right flank : CAAACAGCCTTGATGGTGCGTTCCATCAAGGCTGTTTTTGCGTCGGGTGTATTGTCAAGCGGTTTGGATAATGCGGTATTGCCCGTTGCCGAATACCGTTTCTTTGCCCAAGTGCAGCCATTGCCCGATATACAGCATTTGCGAGAAGGCTGGCGTAAGGCCGGTCAGCTGCCATGTACCGATTGCGCCGCTAAGGGGCGTAATCTGCTTTTGACGGTTGGAAAAACGGCGGTGTTCGTGCCATGAAAGCCGGGGCGGGACGCCTTGCCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTTGCATTGTTGCCCCAGTGCAGATGGGCAAGCGTCAGATAGCGGCGCAGGAGCTGGCGCAGGAAAACCGCCTGCGTCAGTTCGGTTTCGCGCAAAATCTTGCCTTTTTGCCGGATACGCAGAGGCGTAAGCAACTGGATATGCGCTTGGGGGGGATAGCGTTCGGGCAGCCTGATATGGTTGTCGTGCAGCGCGATGGGGC # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 7236-5082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWT010000022.1 Neisseria elongata subsp. nitroreducens strain Nel_M001 Scf_22_12854, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 7235 33 93.9 33 T............G................... TTTTTTCTGGGAACGGTTGGAAATAAATTTTTG 7169 33 93.9 33 A............G................... TGTTCGGATAGCTTTTGTAGTGCGGCTAGCGTT 7103 33 93.9 33 T............G................... CTTTACTTTGAGAAAAAGCCGAAGATACCTTTA 7037 33 93.9 33 C............G................... AAAATTACGGGTGCGTTTGCCGCCAGCGTACCA 6971 33 93.9 33 A............G................... AGCAAATTACCTGTTACAAAACAAGTTGATTCT 6905 33 97.0 32 .............G................... GCTGCAAAACCAGCGTCGGCGGCTTTGCGGCA 6840 33 93.9 35 A............G................... TTGTCCTTCTGGTGCCGTTGAATTTGGAATTAATT 6772 33 93.9 34 C............G................... CCGTTGTACATCCAAACCTCATTATTCAAATACG 6705 33 97.0 32 .............G................... CCAAATGGCAAACATTTGCCAAACTCACCGGA 6640 33 93.9 34 A............G................... TTCCGCGCCCTGATACAAAGCATAAGCCAGCGTA 6573 33 93.9 35 C............G................... AACCCCTAATGTAGAAAGGTATAGCAATGAATGAG 6505 33 93.9 34 C............G................... CGCCCCGACCTTGCCATCCTTGACGATATCGAAA 6438 33 93.9 34 A............G................... ACCATGCTTCGTGCCTAAGTATTGGCTAAAGATG 6371 33 93.9 33 T............G................... ATGAGTGCTGGTACACCTTCTGGTGCCCTCACC 6305 33 93.9 35 C............G................... TCCCTGTTGGCGGCGGGCGGCACGGGCGGCCAGCA 6237 33 93.9 33 C.....................G.......... TTTGCCGATTATTCCCAGCCATTTTTCTTTCCG 6171 33 97.0 32 A................................ ATCAATGCTTTACCCAAAGCATTTTTGCCTTT 6106 33 100.0 33 ................................. AGATGTATTGATGGTCTTTGATGGCATTTCTGT 6040 33 97.0 33 T................................ TTCACAACGACCACAATAGTGACATTTCATTGG 5974 33 97.0 33 T................................ TAGCCATGTATTCATGCTTGCTTCGTATGATTC 5908 33 93.9 33 A...............................T CATCATGCCCGATCCGACTGCAAACGCAAACAC 5842 33 97.0 34 C................................ GGTATAGAGATTATTTTCTCGGCCATCGCCATCA 5775 33 100.0 33 ................................. ACTCTCGAATTCGGCCCTATGGAGCGCCACAAA 5709 33 100.0 33 ................................. TCCGCGTGCAACCGCGTGCTTCATCAACCTCTG 5643 33 97.0 33 C................................ CATCGAATCGCCCTTTACGGCGATGACGGACAG 5577 33 93.9 33 C.....................A.......... AACCGTTGCAGGTTGCGGCGGTTGGCCTCCGCC 5511 33 100.0 34 ................................. AAACGAATCACATTTCAACGATGAAAATAACATA 5444 33 97.0 32 T................................ CACGTCAGGCGCAGCGTGCCGGGCTTGATGGT 5379 33 100.0 34 ................................. AATATAACATCAGGCTGTTGTGTAGCGAACAGGC 5312 33 97.0 34 C................................ CACACTAACGCTGCCGCCAGCAAAGCGGCGACGG 5245 33 100.0 32 ................................. GGCAACGGTACGATGCAAATCCAGAATGTTTT 5180 33 97.0 33 ................................T CGCCGACCTTAACGCTGCCGCGACTAAGTTTAG 5114 33 93.9 0 .......A........................T | ========== ====== ====== ====== ================================= =================================== ================== 33 33 95.9 33 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTACAGTATTCGGTGTTCGAATGCGACATCGCACCCGATCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGTTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCAGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTATAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTAGGAGAAGC # Right flank : TCTGAAGTGGCGTGAAAATGTATTGGCAGCTGTATATTAAAACGATCGCCACCTCCTGTTTCGAAGAGGTGTCTTGATCGACCGCATCCAAACAGCCATAGCCAAAAAATATCCTTGCTAAAATGATCTGCTGTTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAGGCCCCTTATGTGCGGCTGGCTTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGAGCATATGGAAATGCCGTCCCTGCATTCGCTGGAACATCTGATGGCCGAATTGTCGCGTAATCATTCCGACAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGCTTCTATATCGCCCTGCTGAACATGGGTGAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //