Array 1 6536-5379 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAARXP010000003.1 Listeria innocua strain FSL L7-0313 NODE_3_length_477733_cov_79.267284, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      6535	    36	 100.0	    30	....................................	TATTAACCTGATTACTAAAGATAGTCGAAT	
      6469	    36	 100.0	    30	....................................	GACGGCACCATCAGCAGCTCGCCGCGTTTC	
      6403	    36	 100.0	    30	....................................	CTTCGGTAAACAGTGATTTAGCGCTTGACA	
      6337	    36	 100.0	    30	....................................	TAGCGAATATAAGCCCAACGCACAATATCC	
      6271	    36	 100.0	    30	....................................	GATAGATGGGGTGTATTTACCATACCTACA	
      6205	    36	 100.0	    30	....................................	TGTGTATATAAACGGTAAAAAAATGTAAGG	
      6139	    36	 100.0	    30	....................................	GAGAAGATATTCAACGATTAAAAGATAAAG	
      6073	    36	 100.0	    30	....................................	CAGCGCATTTCTTCAATTTTCGTGACGGTG	
      6007	    36	 100.0	    30	....................................	GAAGGCTGGCGCGCGCGTTTCCCTAACAAT	
      5941	    36	 100.0	    30	....................................	AGCGAGAAGCGCCTAAACAGCCAGAGATGA	
      5875	    36	 100.0	    30	....................................	AAAATTACTTGCTTGGGTAGATGATTTTGC	
      5809	    36	  94.4	    30	..........C...C.....................	TTAATTTTTTACTTCCGTTGTAAACAACCA	
      5743	    36	  94.4	    30	..........C...C.....................	TTCAAACTTGTGTATTTGCAATCCTTGTTC	
      5677	    36	  94.4	    30	..........C...C.....................	AAAATTATCGTTGGAGTTAGCGTTGCAATA	
      5611	    36	  94.4	    30	............A................G......	TAATGTAAAAGTCGCTACTGCTACGCCTGC	
      5545	    36	  94.4	    30	............A.........G.............	TAATATAGCTACATACAAATAAAAATCCCA	
      5479	    36	  94.4	    30	..........A................G........	GATATTCATAATATATGAAAGTCGGTGACT	
      5413	    35	  80.6	     0	............ATC.....C....A....-...C.	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	  97.1	    30	GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC	                              	       

# Left flank :   TGATAAGCTGACCGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGGATAGAAAAATCCTACGAG
# Right flank :  GCATCTCTCAATCTACTTCAGCTAGAAAGAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACACACGAAAATTAGACAAATTTTATATACCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGAGGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACAATTAATAATTAAAAATAAG

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.50,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [13-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//