Array 1 59026-58397 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657389.1 Escherichia coli D9 supercont1.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59025 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 58965 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 58905 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 58845 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 58785 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 58725 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 58665 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 58605 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 58545 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 58484 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 58424 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 68957-68087 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657389.1 Escherichia coli D9 supercont1.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68956 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 68896 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 68836 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 68776 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 68716 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 68656 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 68596 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 68536 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 68476 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 68416 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 68356 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 68296 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 68236 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 68176 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 68116 28 85.7 0 ....................T...C.CT | C,A [68090,68093] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 670396-671461 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657385.1 Escherichia coli D9 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 670396 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 670457 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 670518 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 670579 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 670640 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 670701 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 670762 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 670823 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 670884 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 670945 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 671006 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 671067 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 671128 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 671189 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 671250 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 671311 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 671372 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 671433 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 697161-698287 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657385.1 Escherichia coli D9 supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 697161 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 697222 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 697283 29 100.0 32 ............................. ACGCATTCGAACTGGGCGACATAGAGCCAGGC 697344 29 100.0 32 ............................. GGCGCTGCAAAATGGGGTGGAAGAGCGGCGCT 697405 29 100.0 32 ............................. CCGCCAGCATATTGCGCTGCTCGATTGGGGGT 697466 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 697527 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 697588 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 697649 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 697710 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 697771 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 697832 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 697893 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 697954 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 698015 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 698076 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 698137 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 698198 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 698259 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //