Array 1 2191725-2190567 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065677.1 Clostridium perfringens strain FDAARGOS_904 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2191724 36 86.1 30 A...ACA...A......................... GCATGAATTATTCCTGATAGTTCTTCGCTT A,A [2191710,2191716] 2191656 36 100.0 29 .................................... AATACCTTTTATACCTCATAAGGACGAGT 2191591 36 100.0 30 .................................... ACATCTTATGGAAAATATTTGTTTATAGAA 2191525 36 100.0 30 .................................... TCGAACGCTTTAGATTTAATCTTAGATGCA 2191459 36 100.0 30 .................................... TGTAATGCTTTATGAACTTAATAAAACTTT 2191393 36 100.0 30 .................................... GAGTTAACGGATGCATTACTAATCCCAGGA 2191327 36 100.0 30 .................................... GAAGTAGAAATAGTAGAAACTGGAGAACTA 2191261 36 100.0 30 .................................... GTATTAGAGCAAGGAATAAATCAAAAGCTG 2191195 36 100.0 29 .................................... CATCTTTAAATGATTGTGTTTTTATAACA 2191130 36 100.0 30 .................................... ACAGCTAAACTTGGTATCAATACAATTTGG 2191064 36 100.0 30 .................................... ATGATAATTATGATTAATGAGAGAGTAAAT 2190998 36 100.0 30 .................................... TATATCGTAGGATTTAATGCCTTTAATGTA 2190932 36 100.0 30 .................................... GAGCTAATAAAAGAAGATGAAGGAATAGTA 2190866 36 100.0 30 .................................... ATAAAGCAACATTTTGCAATACTTGTAAGG 2190800 36 100.0 30 .................................... TGTCTTCTTTTGAAGCATTTACTTCTTTAA 2190734 36 100.0 30 .................................... GATCTCTTGCATCTTAAGTTCCCTATGTTC 2190668 36 100.0 30 .................................... CCATTTTTTATAGTGGAACATTTACCAAAA 2190602 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.2 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2704724-2702408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065677.1 Clostridium perfringens strain FDAARGOS_904 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2704723 29 100.0 36 ............................. ACTCAAAAGAAAATCTTAGAACTTGAAAAGAAATTA 2704658 29 100.0 36 ............................. TATACTGGAGAATTGGCATATGAAGGTGGAGCTATG 2704593 29 100.0 36 ............................. TGGTGGATTGCAAAAAGAAATAATATGAATTTAACA 2704528 29 100.0 36 ............................. AAATACCCATATCCTTCTCTAGTAGCTATATGCACA 2704463 29 100.0 37 ............................. TAATGGATAATTAGTTAACTCATTCATATAGAATTTA 2704397 29 100.0 36 ............................. CATATAATTGTATAATTATCTAGAACTCGTTCATCA 2704332 29 100.0 37 ............................. TTATTTTCTAAATCAATACAATATTGTTCTATCAACT 2704266 29 100.0 36 ............................. GTTTCTTGATATAATTTAGCATCACTTTCTAGCTGT 2704201 29 100.0 36 ............................. CTTTATCAGTAAAAGATACATTTATTATATATCCCC 2704136 29 100.0 36 ............................. TTTTGATAGAGACAAGCTAGTTATAAAGGAGAGTGG 2704071 29 100.0 37 ............................. TACCAAATAAATGCTTTTTTTAGCAATAAAGAAATTG 2704005 29 100.0 36 ............................. ATGGTTGCTCCAGATATAGATTTAAGTCCAACAAGT 2703940 29 100.0 36 ............................. ACAGATGGATATGTTAGATATGAAGGAGGACAATCA 2703875 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGCAAGAACAGGAAGG 2703810 29 100.0 38 ............................. TTTATGATTTGGAATTTATTTTATATTATAGTGTTTTG 2703743 29 100.0 36 ............................. GATATTGTTCCTATAAGTCCTATTATTGCTACAATG 2703678 29 100.0 36 ............................. ACTGGAATACATAATCTATTACACTCTTCTATATTT 2703613 29 100.0 38 ............................. CTTATTTTCAAAATTCATGAAAACATTCCTCCTTCAAA 2703546 29 100.0 36 ............................. TTCAATTATTGCCCAACCTATCTGAACAGTAATCCA 2703481 29 100.0 37 ............................. AGTGCATTCCCTATTTCTCTAGTTAATACCTCTTCTC 2703415 29 100.0 37 ............................. GTCAATTTAGTTGATAATATAGCTAAAGGTAATGAAC 2703349 29 100.0 36 ............................. TAGATTAGGGCTAAGTCTAAATGTTTTAGTGACACC 2703284 29 100.0 37 ............................. CAATCAGAACCAGTAGCAACTCGAGGATAAGGACTGG 2703218 29 100.0 36 ............................. AAGCATTACTCGTAATGCCATTATATGCCTCACAGT 2703153 29 100.0 36 ............................. GTTACTGAAGTTAAAAAAAAATCTATTGAATCTGTT 2703088 29 100.0 36 ............................. TTCTTTTTCAGATGCTATTCTTAAATTCTCATTATA 2703023 29 100.0 36 ............................. TTCTTGTAGAAGGAAGAAAGGAGGAAAATGAGTGAT 2702958 29 100.0 36 ............................. CATAAACTTAGACATAGTGCAGCTACAATGCACTTG 2702893 29 100.0 36 ............................. GCTAGTAAGTTATCTATACTTGCTGTTTTGGATTCC 2702828 29 100.0 37 ............................. TTCATTTTTAATTTGATGCTCTATAGCAGTTGTTGTA 2702762 29 100.0 36 ............................. GCTAAGAGATTAGGTGATGAATCAGGTGCTTTTTAT 2702697 29 100.0 36 ............................. CTTGAAATTGAAGTAACTTTAACTTTCTTATTTAAT 2702632 29 96.6 36 ...................A......... GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 2702567 29 96.6 36 ................A............ ATTTTTTGCTCTAACCCTTGCCTTCCCATTTGAGCG 2702502 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 2702436 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 99.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTTATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTAAATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //