Array 1 157389-163883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEND010000003.1 Nakamurella aerolata strain DB0629 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 157389 29 100.0 32 ............................. CGTAGAAACTGCGCAACAGTGCTTGCAACCGG 157450 29 100.0 32 ............................. CAGAAGGCCGGCGCCGGCGCGCTGCTCTCTGA 157511 29 100.0 32 ............................. GTGGTGGGCGGCCGGCGGAACCCTTGAACCTT 157572 29 96.6 32 ............................G GATCAAGGCGTGGCTCACCGCAGGTAGATCAA 157633 29 100.0 32 ............................. GAGTCCCGCGACCATTAGGCCGATGAGAGTGA 157694 29 100.0 32 ............................. CCGAAGACCAACCGCCCGGACGTGCTGGGAGT 157755 29 96.6 32 ............................T CACCATCTCGGCCAAGACCGAGGCGCAGGCCA 157816 29 96.6 32 ............................G GAGGCGTCGGATTGCTGGCTGATCTGACCCTG 157877 29 100.0 32 ............................. GGATCATCCGGGCAGGCGGTGACGCGTCGTGA 157938 29 96.6 32 ............................G ACCTGATCGGTCTGAGCGATCATCAGTGGGAC 157999 29 100.0 32 ............................. AGCTTCGAATCGTGCTCGTCGGCCAGCAGCAG 158060 29 100.0 32 ............................. TGCACGTCACTGCCGGGGGGCAGTCGGCAGGT 158121 29 96.6 32 ............................G TCCCAGCCGAGGGCGGCTGTCTCGTGCAGGTC 158182 29 100.0 32 ............................. GTCAATGCATTCACACCGAGCGCTGACAGGAA 158243 29 96.6 32 ............................G GTGTATCCAGTTGAGACGATTGGTGGTGTGGA 158304 29 100.0 32 ............................. GCCGAGATACGGCGTTGCGCGATCGAGGTGGT 158365 29 100.0 32 ............................. TCACGCCGAGTGCGGACTGTGCCGCAACTTGG 158426 29 96.6 32 ............................G ATCGCCACGATGATCAAGGCGTCGATGACCGA 158487 29 96.6 32 ............................A CAGGTCTGCGCGTTCCCGATGGGTACGAGTAC 158548 29 100.0 32 ............................. GTGCCGGTCCAAATGTTGTTCGTGCTCACTTC 158609 29 100.0 32 ............................. TACGCATCGCACCTGCGGCACTGGATCATCCC 158670 29 96.6 32 ............................A CCGCGCTGTTGAACCTCGTCAAGGCGTACCCC 158731 29 100.0 32 ............................. TTCCGGCTGCATCGAACTCAAGCCTGCGGCGC 158792 29 96.6 32 ............................G GACGTGACCTGATATGAGCACGTACCCCCCAG 158853 29 96.6 32 ............................G CACCGGCTGGCATCACGTCGTGCTGACACTCT 158914 29 96.6 32 ............................G ATGTTCTTCGCGGCATTCACGTCCCGGTCATG 158975 29 100.0 32 ............................. CCATTTGGAGGCAACTCATGGCTGGAATCGCC 159036 29 96.6 32 ............................G TTCTGCTTGGAGTACTGCCCGGTCATCTTCAG 159097 29 100.0 32 ............................. CTGAATGTCAATCATCGGGCGCTCACTGGATT 159158 29 96.6 32 ............................T GCATCTGAGCAAATGCTGTTTAGCGCCGACTT 159219 29 100.0 32 ............................. CGGCTCGGGAAAACGGTGCTCGCGCGCGAGCT 159280 29 100.0 32 ............................. GCGTTGATGGTCGCCCGGTCGGCTGGGAGCGC 159341 29 96.6 32 ............................G TTGGACAGTCGAGTCTCCGCCGATGGACGTGG 159402 29 96.6 32 ............................G TTGCCGCTGGCCGAGCACCTGCGGCTGATCAG 159463 29 100.0 32 ............................. CATCACCTACCGCGGTGGCGAGTACAGCTACA 159524 29 96.6 32 ............................G CCGGGGATGATCCCGCCGGAGTTCATGTACTC 159585 29 100.0 32 ............................. CTGGGATGACACCGCCGGCGTTCATGTAGTCC 159646 29 96.6 32 ............................A CCTTGGCCGGCCAGGTAGCGCGCGTACAGCTC 159707 29 96.6 32 ............................T GGCAGACGGCGGACTACGGGATCGGCCTGAAA 159768 29 96.6 32 ............................G TCCGGAAAGTGCACGCTGTGGGAAGTCGATAT 159829 29 96.6 32 ............................G TCGACGCCGACGAGGCCGCGGGCGTGCTGCGC 159890 29 100.0 32 ............................. TCGGCCAGCCCGTGCCCGCTGAGGATTCGACC 159951 29 100.0 32 ............................. GCGATGCCGACCGTGCTGCCGACAGTAGATAC 160012 29 100.0 32 ............................. CTGACTGGGCCGAACGCCTCGGCGATGGCCAC 160073 29 96.6 32 ............................G GGTTTCGTCGCCACCCGAAGTGTCGCTGCTGG 160134 29 100.0 32 ............................. CCCAGCATGGTGGCCGACCGGCTCGGCGCCGA 160195 29 96.6 32 ............................G GGCACCCATTGTGACCGCACCAACCGAACAGC 160256 29 96.6 32 ............................G TGTCCTCGAACACCGACTGCTCACCCGGCCGG 160317 29 100.0 32 ............................. AGCTCGTCCTCCCGGGCTCGCTGCTCCTCAAA 160378 29 100.0 32 ............................. GTGTTGGTGCTCATGCGATATCGCCCCGCAAC 160439 29 100.0 32 ............................. GAGGTGTTCACCACGGGGGTGGGTGCGGTCAC 160500 29 100.0 32 ............................. AAGGAAACACAGGACGCGGCAAAGGCTTTCGA 160561 29 100.0 32 ............................. CACTAATGCCGGACCAGATATTCTGAATTACA 160622 29 100.0 33 ............................. TACACCGCCGGCACAGGCCATGATCGCGGTGCG 160684 29 96.6 32 ............................G TATCGGGTGGTGATTTGCGGTGATCACAGAAC 160745 29 100.0 32 ............................. CTGACCGCCTCCGTCGCGGCATAACCCCAGGG 160806 29 100.0 32 ............................. GTCAATGCATTCACACCGAGCGCTGACAGGAA 160867 29 96.6 32 ............................G ATGCTCTCTCCGGCGACCTCGTAGCCCACGGC 160928 29 96.6 32 ............................T CGCCGGAGCCCACCGATCGCTGACCGCCTGCA 160989 29 96.6 32 ............................G AGTAGCGAGAGCGCCCTAGTGGGTTTCCTCAC 161050 29 100.0 31 ............................. GTCGGTGCGGGACAGGCGGAGCGCTTCGGGC 161110 29 96.6 32 ............................G ACCCCGCCGGCCGGCCGGCCCTGCGGATGCTC 161171 29 96.6 32 ............................G CCGGCACACAGAACGTCACCACCTCCGGCGGC 161232 29 96.6 32 ............................G CCTACGACAAACCGTGCCAACCGGCGCCGCAC 161293 29 100.0 32 ............................. ACCCAGCCTGCCGGCAGCCGGCCCAGCCCCCG 161354 29 96.6 32 ............................T GTTTCCGATTTCTGGTACAGGGCAACGAATCC 161415 29 100.0 32 ............................. ATCGACCTGCACGTCGAACGCGTTACCCAGCC 161476 29 96.6 32 ............................G CGGCCTCCCGAGCGGCACCCCAAGCGGCATCC 161537 29 100.0 32 ............................. ACCTGGCTCGGCGCGACCGGCGGGGCGCAGTC 161598 29 100.0 32 ............................. CCTTTGTCAGCAGCGACTTTCAGGGCGAGGGC 161659 29 100.0 32 ............................. CGAGCGAGGAATGAGGTTCACGACTACGTACG 161720 29 93.1 32 ...T........................G GTGCCGAACGTTGGCAGCAGCGCTCACTGTCG 161781 29 100.0 32 ............................. CAGGATGCTCAGCCGACCTGGTACCACTCCGA 161842 29 100.0 32 ............................. ATGTCCCCGTACTGGGCGGCGACCCCCAGCGC 161903 29 100.0 32 ............................. TCCACCAAAGCGTCGGCCTTGTCGAGAACCTG 161964 29 96.6 32 ............................G CGGCATACCAAGCGGCAGCGCAAGCGGCATCC 162025 29 96.6 32 ............................G ACCTCACCGACTATGCCGCCCGGCTAGGCGAC 162086 29 100.0 32 ............................. AGGATCGGACCCGAGTCGGACAGGCAGCTCAG 162147 29 96.6 32 ............................G CGGGCGGTGTTCCGGTGATCGGATACACCCAC 162208 29 96.6 32 ............................G GTGCCGCCGGCCCGGGAGTTGTTCACCTGCCC 162269 29 100.0 32 ............................. CACTGCGACCCGCGCTGCCCCGGGTCGCCCTT 162330 29 100.0 32 ............................. ACCCGGGTGCAGGTCGTTGATCCGGTGTCGTG 162391 29 100.0 32 ............................. GAGGACCGGTGGTACGCGTACGGCCAGCCGTA 162452 29 100.0 32 ............................. TGGCCGCCGAGTTCGAACAGGGCGGGGTTCCC 162513 29 96.6 32 ............................G ACCAACCGCTCGACCGTGGGACACCTCATGTC 162574 29 96.6 32 ..A.......................... CGCGACCAGGAAGCGGCGATCGATTCGGAGCG 162635 29 96.6 32 ............................G TTCAAGGCCACCGTTCCCCCCGAGCGGCGCGG 162696 29 100.0 32 ............................. CTGTACCTGAATCTGTCGGCCGGGACCAGCTA 162757 29 96.6 32 ............................T TTGGGGACGCGCACGTCGATGGCGTGCAGCCA 162818 29 100.0 32 ............................. CGGTTGAGCTGGCGCCCTGCTGGCCGGTGCCA 162879 29 96.6 33 ............................G CAAGCTGGCTGGTGGGACGTGGCCTACGCCTGG 162941 29 100.0 32 ............................. CTTCGCGGTCTTCGGGTCGAGCTTCTTCTGGT 163002 29 96.6 32 ............................G CCCGGACACCGCATGCCGGTCCGCCCACGTCC 163063 29 100.0 32 ............................. GCTGGAACGGCGGCGGTGGTCACGCCGTTTGG 163124 29 96.6 32 ............................G AAGGTCGGCCCGGACGAGCCCATCGGTACGGA 163185 29 93.1 32 ................A...........G AAGGTCTCAAACCTCGGGTCGGAAAGCATCTC 163246 29 96.6 32 ............................G GCGAGGGCGTCAACGAAGGATTCGACGTGGAA 163307 29 100.0 32 ............................. TGCCGACGGGTGGGACGGTTGCGGTGAAGTTT 163368 29 96.6 32 ............................G CCGCCTAGTAGCGCTAGTGGGTCTGATGGGAA 163429 29 100.0 32 ............................. CCCGAGGTCGAGGTCATCCGGTACACCACTGG 163490 29 96.6 32 ............................G GGTGGAGACCGACAAATCCGCGGTCCGGTGAA 163551 29 100.0 32 ............................. GACAAGGGCGGCGTGGGCAAGTCCCCAACCAC 163612 29 96.6 32 .....T....................... CGGTCACCTGAGTCACCGTCGCCGACAGCCAC 163673 29 89.7 32 A..T..........T.............. TAGGGGAGCGGGTCACCGTCCTGGACGTGCTC 163734 29 96.6 33 .....................A....... GTCGCGCCAGGCACACCGAGCCACCGCGCGTCG 163796 29 96.6 30 .........................C... AGCCGGGACAGGCCAGCGTGAAAGGCCGTG 163855 29 86.2 0 .C........G........C.....A... | ========== ====== ====== ====== ============================= ================================= ================== 107 29 98.1 32 GTGCTCCCCGCATTCGCGGGGCTGATCCC # Left flank : GCGGCAGCGAGGTCGACTTCGACAATCTTCCGGACGAGGATCCGTTTTGATCGTCATCGTGTTGACCGCCGTGCCGCCTCGGCTACGAGGGGTGCTGACACGCTGGTTGTTGGAGATTGCTCCTGGGGTCTTCGTCGGACGCACCTCGGCCCGAGTGCGCGATCTGATGTGGGCCCGCATCGTCGATGACATCGGGCGCGGACGCGCGATCATGGTGCACTCGCAGCGGTCCGAGCAGCACCTCGACTTCCGCGTGCACGGCCACGACTGGATACCCACCGACTTCGACGGATTGCATCTGATGATGCGTCCCGACCGGAAAACGCCCCCGGAAGCCACCAAGTCAGTGGAAGCTACTGGGCCAAAGGCCTGGGCCAGCCGCCCTCCTCGGATGTGGAGCCATGCCGAGCGGCGCCTCCGACAGCGCCGCCGAGGAGGCACCGGCTGACCAACCGAACCTGGTAACGTCCTGACGTCTGTATCGTGCCTGGTCAAGAAGT # Right flank : CGGGGAGCCCGCCGATCACACGTCCAGCAAGTACCGCTCGGCCGGCGACAGGCGGTCGTAGACGCGCTTGCGGATGTGGGCGGCCTGGTCGAGCTGCTGCGGCAGGTCGCGCTGGGTGAAGGAGAGGGTCATGCCACGGCGGGCGGTGTCGGTGGCGTTCTGGGTGCCGCCGTGCCACAGGTGCGCATTGAAAATGACGACGGTGCCGGCGGTGCCGGTGAGCAGCTGCTGGTCGGGGTGCGGGGCGAGAACGTCGTCCATCACGTCGGCGGGGAGCTTGCCGGCGGTGTGGGTACCTGCGACGTAACGGGTGGAGCCGTTGTGATCGGTGAAGTCGTCGAGCAGCCAGATCGAGTTGCAGATGCGGTAACGGCCGTCGTCGGTGGGGTTGCCGCAGTCGGAATGCAGGCCCTGATTGCCGCTGCCGGGGGGCGCGGCACGGTAGTTCAGCGAGTTCACCCGGAAGTCGCCGAGCACGTGCTGCACTGCGGCCAGCACCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.70, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATTCGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //