Array 1 16930-18459 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVV01000161.1 Pseudomonas aeruginosa isolate B, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16930 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 16990 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 17050 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 17110 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 17170 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 17230 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 17291 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 17351 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 17411 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 17471 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 17531 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 17591 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 17651 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 17711 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 17771 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 17831 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 17891 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 17951 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 18011 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 18071 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 18131 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 18191 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 18251 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 18311 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 18371 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 18432 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28622-27333 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVV01000161.1 Pseudomonas aeruginosa isolate B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28621 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 28561 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 28502 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 28442 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 28382 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 28322 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 28262 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 28202 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 28141 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 28081 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 28021 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 27961 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 27901 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 27841 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 27781 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 27720 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 27660 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 27600 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 27540 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 27480 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 27420 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 27360 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //