Array 1 183089-183317 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMT01000012.1 Saccharopolyspora subtropica strain CGMCC 4.7206 sequence12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 183089 30 100.0 37 .............................. GTGATCAACCTGGCGCGACGTGCATCGCTGTTCGGCC 183156 30 100.0 36 .............................. TCGTACCGGGCGGAGTGCGCGTGGATCCAGTCCACG 183222 30 100.0 36 .............................. GGGGTGCAGACGACGGTGCCGAGGCGGTCGTCGCGC 183288 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTGCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : TTCCACCCTCCGGGCAAACATCTTTAGCCCGCACTACAGCTGGCACCGCAGCGCCCCCAGCCTGGGCAACATTCACCCATTCAGACCAGCCACGATCCCCAGAGAAGCCGCTGCTACCCGACCCAATTTCAGCGAACCCCCCAAACCCCCGACCGCACCGCAGGTTCGCTGAAACCAACAACCCAACAACGCGCTGCCGCAATCCACCTCGCGGTGAACGAACTCCGACCAATGGATTCGATCACGCCACGACAGCCGTCTTATGCCACCAAGGACCAAGCGACCCAGCCCCCGCCACAACCACCGCCACGGAGGCCACACCAACCTGCGGCCCCGCCAGTCAAGCCGCCACTCAGCCAAGGTTCTCTTGATTACGCCGTCGTAAGAAGCTAGCCTTCTGCAGAAGCACACCCACACCGTGTGACAATCCACCCCACCACTGCAGAACTCAGCTCCTTGACAACGCAAACGCCCTACCTGAACAGGTCCTTTACCATCGG # Right flank : CATGGCGGTCTCCTCCCGCAGCTCGCGGACGAGCGCGTGCTCGGATCGGGCCGTGCTCCAGGTCGAGCGCGGCGAGTTGGTCGCGGCGGTCGATGTACGGGCGGGTTTAGCAGTCCGGTGTCGTCGAGGTACAGCAGGTCGAAGACATACAGACGTGCGGGTGTGTCACGCAGCTGCACCGCGGTCGGCCGGGCGCGGTGGATGCGCAGTTGAAGACGGCCGAAGTCCGGTTGCCCGCCTGGCCCCAGGGCGACGATCTCGCTGTCCAGCACGACGCGCCGCGAGCCGAGCGCGTCGGCAAGAGCGCGCAGTTCGGAAAACGAGGTGGTCACGTCCCGCCCGGAACGGTTGATCAACCGAAGGCCCTCGGGCCCGGCGACGACCAGGCGCGCATGCCGTCCCACCTTATCCCCACCGCCCAGTCCGGACCCGTCGGTGGCGGGCCCGGACTGGGCGGTGGGGAGCATAGGCCCGCGCGCCACCCACGCGGGTATCCAAGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 28173-27839 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMT01000015.1 Saccharopolyspora subtropica strain CGMCC 4.7206 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28172 29 100.0 32 ............................. TGTTTCTGCCGAGGCGATCGATACGTGTGCAC 28111 29 96.6 32 ............................A GGTACTACTGACCTCGGTGGGCTCCTGACCGC 28050 29 100.0 32 ............................. TCGTCGGCATTGGAAAGCAGGAGCCGCTGATC 27989 29 100.0 32 ............................. GTCTTCCGGTTCCCGGCGAATCAGCCGGTCTG 27928 29 100.0 32 ............................. GACAAGATCCCTCTGATCTCGGGAGACGGTTT 27867 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTCCTCTCCACGCACGTGGAGGTGTTCCG # Left flank : ACCGTCGATTCGGTCCGCTACGACGGACATCTCGTCGTCACCGACCCCGACGCTCTCGCCAACGCCCTGGTCACCGGCATCGGCCCCGCCAAAGCCTACGGCTGCGGCCTGCTCTCTCTCGCCCCACCACACCGCTGAGGTTGACTCGCTGGAACGGCATCTGGTTGTGCGCGAAAAGGCAGTGACGATGTCCTCCTGGTTGGTTCAGATCGATGTCTCCCCGCGCTGTACCCGCCTGTTCACCTGCGGGCTGCTCAAGCGCCGCGACCTGCGTCGCGACCTCTGCAAGGCGGGGATATGGGTGCGGTACAACGTCGCCCGCCGACGTCTACATCCACCCCGACAACAACGAACAGCGCTACACCATCAAAACCGCCGGCCGACGCCGCCGCCACATCATCGACCACGACGGCCTCCAACTCATCGCCTACACCCCCGAACCCACCACCCAAGACCACCAAAACGAGCAACTACCCTTCTAAAACTCCAGGTCGCAAAGT # Right flank : TCGTGGCGTCGGATAGCGACCGGGCCACGTGTCGAGACGGTCGACGTGACCGAGAGCCGCCCCCTGGAGCGTTACGAGGGCCCCCGGGCGTCGTTGCCCGCTCGGTCGCGGCGGCGGCCTTGGGATAGTCGGTTCGATTCCGGCGGGCGCCGCAGTACTGGCCTCGGCTGTGGCGACCTGTGCCGGGCCATCGCGTTGTCGTCCTGCGGGGGCTTCGAGCAGCTCGTAGATTTGCGGGGTGGGGGGAACGAACGATGCGCCGACAGCGTCCGTCGGGGGCCGTGCCGATCAGCTGCCACGTGGCGTGGTGGTGCTCCTGGGGATGGCCGCGGCGGTCGTCGTCGCCGGCGGTGTGAAGGCCGTTGGCTGGTTGATCGCGCCGACCTTTCTCGCGATGGTCATCGTCATCGCGACCACTCCGGTTCCGACGTGGCTGGTCCGGAAGGGATGTCCGCGGTGGCTGGCCACCGTGGTGCTGGTTGCCCTGGTGTACGCGGTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCACGCACGTGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36768-37285 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMT01000015.1 Saccharopolyspora subtropica strain CGMCC 4.7206 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 36768 29 100.0 32 ............................. CTCCTCGAGGCGCGCCAGCACCTCCTCGACCA 36829 29 100.0 32 ............................. GCAAACGAGCACGTGCAGCCGCGCATCGTCGC 36890 29 100.0 32 ............................. CGCTCGGCGTCTACCAGCAGATCAAGGACGAC 36951 29 100.0 32 ............................. GCGGGTACAGCTATGACCCGCTTTCTTCCAAA 37012 29 96.6 32 ........T.................... CTGGTTGGCAGCACCAGGGGAAGCCATCACTA 37073 29 100.0 34 ............................. CGCAGCTCCTGGACGCGATCCCAAAGCCCAGGTG 37136 29 86.2 32 C.CT........................T CCCAGGCTGTTGAGGGGATGATTCCCGCCGTC 37197 29 93.1 32 ..............T......C....... GTCGTTGGGTTCAACTCATAGGGAGGAGTCCC 37258 28 86.2 0 ..............T.....-...A..T. | ========== ====== ====== ====== ============================= ================================== ================== 9 29 95.8 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : TCAGGCCGTTACTCCATGCCGCGTCGGGCGGTGCCTCTATGTCTTTGTCAAGTGGGGTTGTGGGGCAGGACCTGGGAAAGTGGGTGGGCCTCCAGCGGGGCCTGCCTCGCTCTGGGTTTGCGGGGCCAAGCGCTCATGGGCGGTCGCGAGAGCGGGCAAGGGAGGGGACGACGATGTCGAGGTGCCCACGACGTATGCCGCCACAGCACCCGCGCCGCCGCCGCGGTATCCAACCCATGACATACCACGGGATAACAAGCCCCGCCCAGCCCGCGCTCCTTGCCCCACAGCCGGAGATCCACTACCACGTACGCCCCCAGTCCAACGTCAACTAGCCACCACGCTTCCCAGCGCGCCGTACACTAGCCACATCCCCTGACAGAACCACCACCTATCCAATAGCACTCACCCAAATGAACCAACACCAGTACTTCAGGCCCGCCAACCCACCCACACGCCAAAATGAACAAGCACGCTCCTAAAACCGCAGCTCGCGAAGT # Right flank : GATCGACGAGGTGTGCGCACGCGAGTCCTACGGTGGTGCGGGCTCGACCTCCGCGTTGGATGCCGTTTCCGGCCAGGTAGTTACGCGTCAGCGCGGCCTGGATATGGCGTGGCAGCGTGGCCGACACCAGCACAACCGGCACCTGCATTCGGCCGTACCAGGCCAGCAGCCGCCCCAGTAGGGCCTGAGCGTACGGATCGTAGGTGTGCCTCGTCGACCAGGAGCACCTTGTTCGCCGGCGCATGCAGCCGCAGCATATTGAATTTCGAAGCCAACGCCGCCGTCAGCGCTTGGTCGATCGTCCCGACCGACATCTCCGCCAGCAAGACGCTGGCCCGGCGACAACCACCGAAACGCTTCCGCATCCGCCGAGTGCGCTGATCTGCGGCGCCGTCTTCACCGGGGTGCCGATGCGCGGCCTGCTCCTCGAGGGGGGTTGCGGCCCGAGGCGCAGCAGCTGTTCACCACCAGCGCTGACGGCTACACCATGGGCACCCCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 40462-41041 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMT01000015.1 Saccharopolyspora subtropica strain CGMCC 4.7206 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40462 29 100.0 32 ............................. TCGTTCCACGCCTCGACGTACTCGTCGAACTC 40523 29 100.0 32 ............................. TAGCGGTTGATCTGCTTCCACGGGGTGGGGAC 40584 29 100.0 32 ............................. GTGCTGCGCGAAGAGAAATGGGTCCGCGTGGT 40645 29 100.0 32 ............................. CCCGGCCACGAGGGGCGCCTCGCCTGCCTGGC 40706 29 100.0 33 ............................. TCCGGGCCGACACGGCTGTAGTAGTGGTTCGAC 40768 29 100.0 32 ............................. CTCCTGTTTCTGCTCGTCGGTGTATTCGGTCC 40829 29 100.0 33 ............................. GACGTCACCATGTTCACCGTTACCGCCCACAGC 40891 29 100.0 32 ............................. GCGATGCCGAGCTTGCGGGCGATGCGGTCGAC 40952 29 100.0 32 ............................. TGCGGGATCGTCTCGGCGGCCTCCGGGTTGTC 41013 29 86.2 0 ........................A.TGA | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.6 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : ACGAGTTTGAGACGCGCTACCTCGCCATGTTCAAGGCCGAAACCGCACACTTCGACGAAGATACTTTCGACACCCTCGACGGACTCTTCGCTGACGTCGACGCCTACGTCGCCGACCCTGCCCTTCACGACAGCCCAGAAGATCTCGACGACGAACAGCTACGCGCCCGCGCCGCCTGCGCGCTTGACAAGCTCACCTTGGTAGATGGCTGACCCGCAGGCGCTCCGCGAGCTGGGGAGCCAGCTCGGAGAACAGGCGGAAGGGAAGGTCGCATGCACAAAGCACGTAATCCATCTGTGCAGCGTGTACGTGCCCCGGGTGCGACTCGAACGGCCAGCACGGTTCCCAGTGCGCCGTACGCTAGCCACTTCCCCTGACCAAACCACCGCCCATCCGATAGCACTCACCCAAATGAACCAACGCCAGCACTCCGGGCCCGCCAACCCCCACCAACGCGCCAAAATGAACAAGCACGCTCTTAAAACCGCAGTTCGCGAAGT # Right flank : ATTGCGGCGGCCGCCAGGCAGCGAGACTACTCGACAGCCGAGGCTGGTCCAGCGTGTGAACGGGCTGGCTGGCTGTGCATCTTGTACGTGCCCCGGGTGCGACTCGAACGCACACTGGACGGATTTTGAGTCCGCTGCCTCTGCCGATTGGGCTACCGGGGCTGGTTGGAAGAAAGCATACGCCAGGCTTGATCATCCTCGCGCACCGGGTGCTCGGCATACGCGTGTCCTCGGGGACGGACTGGAAGGAACTAGAGGGGCCGAAGTTCCGGTTGATGCGTGGGGCTTCCGGACGGGAACCACGCTGCTGGTGATCCGGGTGGTGATCGTCACCCTCGGCGTCGGAGCCCCGTCGCAGCGGGGCCCGCTCCGCCGGCATCCTCGAGATCCACCTGCTGTTCCAGCGGCGGCGCGGGGCCCGGGTCTGAATCGATGTCGCCATGGTCACGTCGCAGGTTTACGTCGCCGTCAAAGAACACCCGGTAAGCTGCGGTTTCCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : TGTGCTCTCCACGCACGTGGAGGTGGTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19441-19648 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMT01000025.1 Saccharopolyspora subtropica strain CGMCC 4.7206 sequence25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19441 29 93.1 32 .C........................T.. CTCATGGTCGAAGGCGGAGGGCAGATCCACAC 19502 29 100.0 32 ............................. GCGCCAGCGTGATGGTCACGACGATCATGGTC 19563 25 86.2 32 ...............----.......... ACCCCTGAGATCGCCACAGGCGGCACGAACAC 19620 29 86.2 0 .....T..................GA.T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 GTGCTCTCCACGCACGTGGAGGTGATCCG # Left flank : ACGCCGTTTTCGATGTGGTCGATATCGGCGATGGTACGCGCGGGATCGTGTGGATCGGTGACCTCGACCCGCCGACGACCCTCCAGTTTCCCCGAGGCGGGCGGCTGGTCCCCGTAGATTCCGTCACCCACCCGCGTGGCGTCGCGCTGGGTGAGGTGTTCGCGGCCGCACCGGTCCACGAGCCCAGCAGCCGGGTTACGACGCCTTCGAGGTCGTTCAGGCGGGCGTCGATCTCCTCGGCCGCCCGCCGCAACTCGGGCTGGCCTGTGCGTCACGTACGGTTCCACCCGGCCTGGCCTCGTTACCCTCTTCTGCGACTCCGACGAACCAGTAGGGAAGGATTCATGGTGCTAGGCCGGTTGGACTGGCACGAGGTGTTTCGGCAGGTCCGTGATGTCATCGAGTACCGGACCGGTCCCGTATTGAGGGTCACCTGTCCGGCTCACACGCCAACACGTCAGAATCGACAACCACGTCCCTAGAATCCGAGTTCACGAAGT # Right flank : GTCGGCGGTGACTGTGTAGCCGCCGGGAATTGGTAGAGGCGATCTGGTAGCTCGGGGGGAGCCGGGCGCCGGTGCTGGGGGCTCTCTGTGGCCTGTGAGCGGTGTGAGGCGTGTTCGTTGTGCGGGGGTTTGGGTGGCCGGCGGCGCTTTCGTGGCCTGGGCCTGTGCGGCCATGTGTCGCGTCGATCGACGCTCGCAGCGCCGCTTCGAAGGTCAGTACGGCAGGTGGGGCACGAGAAGGTGGTAACGCGCCCCCTTCGGCAGGGCGTTCTGCGGGCATGTTCGATAGGGCGTGACCCCTTGACGTAGGACCTGGTTGAAGGAACCAGCCAGGATCAGTCGGGCGTCATGCGTCAGCCGCTGCGGAGTTGTCTCAGGCGGCTCTGCGGGGAAGGGCACGACGGGCGTTGCCGCAGGTTACGGGCACTACCGGGCAGCGCAGGCGGTGTGGACCAGGTGATGCGGGCCACTGGGTAGTTGACCCCATCGGTGTACTGGTT # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41217-41737 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMT01000025.1 Saccharopolyspora subtropica strain CGMCC 4.7206 sequence25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41217 29 100.0 33 ............................. ACCGGCTGATCGAGCCGCACCATCGGCTTGCCC 41279 29 100.0 33 ............................. GCCGTCCCCTGGCCGGTCCGCCGCACTCCGTTC 41341 29 100.0 33 ............................. GCCGTCCCCTGGCCGGTCCGCCGCACTCCGTTC 41403 29 100.0 33 ............................. ATCGCGCGCATCTTCTCGTCAGTTCCGATCAGA 41465 29 100.0 32 ............................. TTCTCGATCGCGTTCACGGCACCGGCCCACTC 41526 29 100.0 32 ............................. CCGAGGCCGAGCTGGCCCGGGCCCGCGCCCAG 41587 29 100.0 32 ............................. CTGGCCGCCGCCGAACTCGCGGCCGCGGCGGC 41648 29 100.0 32 ............................. GGTGGTCGCAGGGTAGGTCGCCCGGCTGGTCC 41709 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 33 GTGCTCTCCACGCACGTGGAGGTGATCCG # Left flank : GTCCGCGACACCGCCGCCGCGGGCCGGGTTGCCCCGATGTGGAGCGGATCGTGTACTTTGGCCGCGACCGACACCCGGATGAACGCCACCCCGCCGGTACGCGGTGCCATCGGTGAGCAGGCCGGAGGGCGCTGCGGGCCCGCTGCACGCGGCGGCGCTACGAAGGTCCCCTTCTGCCCCCGGCTCTGGCGTCGGTGGCGGTCCACAGCGTGTACTCCTGTTCGGCTGGCGACGATAACCTGTACTGACCGCCTCGGGATGGGCCTGTGCGTCACGTATGGGCCCACCGGCCCGGCCTCGTCACCCTCCTCCACGACCCCGACGTACCAGCAGGGAAGGATTCATGGCGTTGGCCCGGGGTGGACTGGCACGTGTTGTTTCGGCAGGTCCGCGATGTCATCGCGTCCCGGACCGGTTCCGTGTTGAGGGCCACCCGTCTCACCCACACGCCAATACGTCAAAATCGACAACCACGTCCCTAAAACCCCAGTTCACGAAGT # Right flank : GCGTCCCGATCGTCCGGGCCCCGTTCGTCTGGTTTCAACTGGTTTCCCGGTAGTGGTCTCGGCGCTGCTCAGGGTGGAAGTCGCCGGACAGGGGCTCTACCAGGACCCGTGTCGTCTGCCGTTCCCTCGGATCCGGGGTTGTTTCGGCTGGTGGGGTTGGTCTCGTCGCGGCAGTACGGCAGGTGGGTCACGAGTAGGCGGTAACGCGCCCCCTTCGGCACGACGTTCTACGGGCATGTTCGATAGGGCGTGACCCCTTGACGTGGGCCCGGTTGAAGGAGCCAGCCAACGTCGCGGGGACGCTCGGTTCGCGCCATGCGTCAGCCGTTGCGGCGTCGTCTCAGGCGGCCCCAAGGAGAAGGGGCATGACGAGCCTTACCGCAGGTTGCCCGTGGGTTACGGGCACTTCTGGGCAGGGCGGTCGGCGCGGATCATGTGATGCGGGCCACTGCGTGGTTGGCCCCATCGGGGTACTGGTTTCTCGGCTGTCGCTGTGACCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //