Array 1 128879-127926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROZ010000003.1 Listeria booriae strain FSL L7-1773 NODE_3_length_302327_cov_49.933221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 128878 30 100.0 37 .............................. CAAATTAAGCGTAGCGTCCAAGAAAAAACGAGTGTCC 128811 30 100.0 36 .............................. ACGTTGATTTGTGACTGGTTCGAAGAAACAATTGCC 128745 30 100.0 37 .............................. GGACTAAAATCTATTGCGGATGCACTACGTAAATTTT 128678 30 100.0 36 .............................. ACCGACGACCTGCGCGTTATTGTGAACGCCCGAGTC 128612 30 100.0 36 .............................. TCACACAAGAAGAATTTGATTTAAAAAAAGCTGAAC 128546 30 100.0 35 .............................. ACTAGTAAACGCTTGTTGTATACTTCGGATTCTTG 128481 30 100.0 36 .............................. CTCGCTGTCTTTTGGGCTAGAGTTGGTAACCACCAC 128415 30 100.0 36 .............................. TTTCAATCTCTCCTTTTTCATTTTGAATTGTTTCTA 128349 30 100.0 36 .............................. TCGTTTTCTGTAATTGCAAAGCCTTCTTCAATCAAA 128283 30 100.0 36 .............................. ATTGAATTGGCAAAGCGACGTTTGAAAAAGATAGAA 128217 30 100.0 35 .............................. ACCGTAGCCGTGTCTAAAGTATTGACGGCTTTAAG 128152 30 100.0 36 .............................. TCGACATAAATAGAGCGAGCAGTTGCGGATAATTTA 128086 30 100.0 37 .............................. AAAACAGAAGTAGAAGTTTGGTTTAGGAAAGTAATTG 128019 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATAAATGCCGT 127954 29 86.7 0 .................A....-.C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGGATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAGCAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGAATAAGAATCCTAAAAATCTGTCGACCGTCGGTAGCGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTCACCAGATTTGAGACCGTTTTTGGAGGTTGGATTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGAGCACCT # Right flank : TAGATTGCCCACAGATGCAGTGTCTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 70201-71474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROZ010000011.1 Listeria booriae strain FSL L7-1773 NODE_11_length_124324_cov_46.696709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 70201 30 100.0 35 .............................. CCATTCAATTTATTAATGCTTGATGACTTAACTTA 70266 30 100.0 36 .............................. CCTAGTCCTTGTGTTACAGGCTTTAACGTTGAAGCT 70332 30 96.7 34 ...........G.................. TTTAATTATCTTGTTTTTCCAGACGAAGGTATTG 70396 30 100.0 36 .............................. AAATTCACGTTGAAAGAGATGTACCAAAATCGTGCT 70462 30 100.0 34 .............................. CTCTCCTTCCGTATTATGAATGGCTTGATATGTT 70526 30 100.0 35 .............................. CGGCTTCGTCTGGATTGGCGACAATGCACGTAAGC 70591 30 100.0 35 .............................. GCAACCGCATCAGCCTCCCGCCCAATTTTACCGTC 70656 30 100.0 36 .............................. TGCAGACTTAAAAGGCTAAGTTCACCCGAAAAGTCA 70722 30 100.0 37 .............................. TTGGGAAACACGCTTATGGAGAAATTAAAAAGGTGCC 70789 30 100.0 36 .............................. CCTTTATATTTCTTAGGTATAATTTATTGCGTTATT 70855 30 100.0 36 .............................. GTTTGGGGCTCGCTTGAAAAACTTTGAATACTAGTT 70921 30 100.0 37 .............................. AACGATGCGTTGTTCCATACGTCTTGGAGTGAAGAGC 70988 30 100.0 36 .............................. GCGCTAAACAATCGTTAAAGAAATCCAGCCACGTTT 71054 30 100.0 36 .............................. CCTCATTTTTATTAAAGTGATTATCGTATTCGTTAA 71120 30 100.0 35 .............................. TAATTGAATAAATATTCATTTCTTTTTTGTTCAAA 71185 30 100.0 35 .............................. TTTATTTGTTCGATTTGCTAAATTCAACACGTTTA 71250 30 100.0 34 .............................. AACGTTAAGGTAGTACAGCGAACTGTTTCACAAC 71314 30 100.0 37 .............................. ACCTACAGCGAGATATTGGAGCAAGAAGAAGCAATGG 71381 30 100.0 34 .............................. TTCTCTTTTTATAGCTGCCCTAATTGTCATCAAA 71445 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.0 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACGAGTTACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCAGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTGGTTACTTCAAAAAATGAATTACTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATGCCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 76118-74722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROZ010000011.1 Listeria booriae strain FSL L7-1773 NODE_11_length_124324_cov_46.696709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 76117 30 80.0 21 .G..T.....T.....GG..G......... ATTGTCATTGTTGTCGTTCTT AG,A [76097,76109] Deletion [76067] 76063 30 100.0 35 .............................. GAGAATGCCGCCGCCTTTGAACGTGCGAATTTAGC 75998 30 100.0 36 .............................. GAAATCTCATCTCTATGATTCATTATAACGTCTTAC 75932 30 100.0 36 .............................. TGTGTCTCCGAGGTCATCTATCCCATTTTTAAGAGT 75866 30 100.0 35 .............................. TTGACGGCTCCAATCTGACGACGAATAAGATTAAA 75801 30 100.0 35 .............................. CCTGAAATATTGTCAATGAGTAACAAATAATCTTT 75736 30 100.0 36 .............................. TTGATAGTCTTGTTAATAATGAATTTCAAAATAAAA 75670 30 100.0 35 .............................. TGATTTTCAAGAAACGAAGGCGAAATTCATAAACA 75605 30 100.0 36 .............................. ATATGCAATCTGAATCTTCTCTGTCTCTAGTTGTGA 75539 30 100.0 35 .............................. TATCTTTGCTCATCTTCCAAAACACCGAGTTATCA 75474 30 100.0 38 .............................. GAACTAGCTATCTCCCCATGACCGACACCTAATTTTCG 75406 30 100.0 35 .............................. TCCGTCGCTCTGTAGGTGTAATACACGCTTGACAT 75341 30 100.0 36 .............................. CGGGTTAAGCGCTGGAACATTTACTTTTGATGAAAA 75275 30 100.0 34 .............................. CTAAGGATTATTTTAGTGAAGTTTCAGAAATAAC 75211 30 100.0 34 .............................. AAAACACTGATTTATGTGGAAAATTAATTGTTGA 75147 30 100.0 37 .............................. TATTATCCCAAACGAATACTTTCGCTTGGATAGTAAC 75080 30 100.0 36 .............................. TCATCTCCAAACATAAACAGCACTCCGGCCAAAAGA 75014 30 100.0 36 .............................. TCCTTCCTTGTTGGGTTTCCTTAAAATTGAACCATA 74948 30 100.0 35 .............................. GCGGTCGACCTAATTTACCAGAACGAATTGCAAGT 74883 30 100.0 36 .............................. TAAATTCGCGAAATACGAGCTTAGACAGCCTTACAG 74817 30 100.0 36 .............................. ACTGTCCTATTAATATTATTCGCAATATTCTGCTAT 74751 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.1 35 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : CTGTTTCAAGAAGCGCTTTCACTTCGTACTGTGTAGCAGTAATATACACATTCGAACCTTCATAATCGCGTTTCCAAATGCCAATGATAGGTAAATCCACTAGTCCTTTGATTGCTTGAATGTCTTCCGGAGAATTTGCTCGAATTCCTTTAGCACCACCTTCTTTAGCAGCAAGCGCCATTCGCGCCATAATCATGGAACTGTGCAAAGGTTCGCCTTCTAAAGCTTGGCAAGATACTATCAATTGTCCTTTTAGTGTATTTATACTCATCATAACGCTCCTTTCAGAAAGAATTTTACACTATTATTTTATTTTTGTAAATGTTTTTCACCAATATATTTTTTAAATGTATGAAATATATTCTATACTTCCTATTTGTTTCATTTACAGTAAGCAAGTCTATGGGTTTTTTGAGCATGACAAAAAACACTTATAGACTTTGGGTAGTTTAGTGGTTGCTTATAGTTTATTGGGTTGGGGGATGTTATGTTTATGGGGG # Right flank : AGGTACCCTCTCAGCGCTTACTCCCATCATACCTCAAACACCCAAATCTGTCGACCGACAACAAAATGCTAAATCATTGCCCTCAAACCTTACAACCCAAACTCCGAAAATAGGCTTACCCCCTTCAGTACCAATGCATAACAAAAATCTGTCGATGTCCCCATTATTTTGCACTACTGGAGGTCGACAGATTTTCTTCCTGTTATTACGAATCAAGATTATCTGTAGAAATTATCTTTTTCTTCCCGCCTTGCACAATCAATGCGCTATTCGCAGGAATTGTTTGCTTTTCGTACTCAAAATTCTTGTTCGAGAAATTCGCTATGACTTGTAGATTCGCGCCAAATGTTGTTTTCTGAACGAGGCGTTCTTTATCTAGCACTTCAAAGCTGCTCATTTCACATTGTAATGCTTCTTTTTGGAATGGTTCCCAGCTTTTCGAATTGCTGATGATGTCTTTTTTATGCAGTTTCCAGTTGGCTTCATCAAGATGGAACATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 91020-91385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROZ010000004.1 Listeria booriae strain FSL L7-1773 NODE_4_length_254147_cov_57.699107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 91020 36 100.0 30 .................................... ATTATTGTGAAAAGCATAGGGGTTTTGATA 91086 36 100.0 30 .................................... AAGGTGCTGTGGAGGAATTAAGCGGTGCAG 91152 36 100.0 30 .................................... CTTAGATAACGGGCTGTATAAAATCGACTG 91218 36 100.0 30 .................................... TTATCCAGGGATTGTTAGAAACATACGACT 91284 36 97.2 30 ................A................... CTAATGAGTATGCAGATGAAAAAGACCTAG 91350 36 86.1 0 ..............T............T.T.T...A | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAACAGAACACACCACTGTTATAGCAAGAAAATACTGCGTCATTTACTACTGATTGGATGAGCATCCTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTGTCCCACTTATCCACAGTAGAG # Right flank : AGTAACATCATATTGCGTCCTCTTATCCTATCCAATTTCGTTTTGAAATTGACTACAATGCCCTATGTCAGATTTCTAAAAGTCTCTTCACTATACCACAATACTCTTCCGAAACCTGATTTGTTTCTATATAGCTATCATGGAATTTTTTTTCACCTAGATGTCTCAGTTTTTTTGGCTTTAAGCTTTTTATCACCAACCTATGTTTATTTTCTTTCAAGTTAGCAAATTCAACACTCATACCATGCCTATCTAAAATATCGATTAATGACTTGGAAACGGCATTCTTTAATTTACGATCATACTCAAAAATTTCTCTTAACCGCTTAGACAAATAGAGCAATGTGTAATCAGATTTGGGTGATAAATAATTTAGATGTGCTATACGATTCCTTGCTTCTTTCTCAGACACAAACAGTTCTTCTTTTTTCATGAATATATCCAACTTTTTAATACTTTTTAGTCTATTATCGCCCCAATATTTCACTCTCTCAGTAATT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 94846-95077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROZ010000004.1 Listeria booriae strain FSL L7-1773 NODE_4_length_254147_cov_57.699107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94846 36 100.0 30 .................................... AGAGGTTCCGTAATGATGATGAAATTACGT 94912 36 100.0 30 .................................... TCATTTGGTAATACTGTAGCAAAAATGATA 94978 36 94.4 30 ..........C...C..................... AAATTCGACAAAAAGCTAGAAAAAGCGATA 95044 34 86.1 0 .........................--..G...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTACGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : CATATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAAGATACTTAACACCAAACGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTTCCCAGTATTCACACCATATAACA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 44007-42210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROZ010000015.1 Listeria booriae strain FSL L7-1773 NODE_15_length_95786_cov_51.295960, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 44006 30 100.0 37 .............................. CTTTTTATATTGTGCGATCAACTCCAGCCATTCCCCA 43939 30 100.0 36 .............................. TCAGTTAGAGGTAGCTATGCGGGTTGCAGAGGATGC 43873 30 100.0 36 .............................. TATTCAAAAGTATATCCGCTAGCCTCAAAGGTACCT 43807 30 100.0 37 .............................. ACCGCATCGGCATTGAGCGGCTTAGATATTAGCGATG 43740 30 96.7 35 T............................. TGTAGATAATGCTGTTCAAGAACAAATAGCATTAC 43675 30 100.0 36 .............................. AAATAACTGCCGTGAATCATCGTACAGCGCCATTGC 43609 30 100.0 36 .............................. TCCCTAAAAAATGGCTGCCTATCACTTCAATTGTGC 43543 30 100.0 37 .............................. GTGGATATAAGCAAGCTCAAGACGAATGATATTGTTG 43476 30 100.0 36 .............................. TAAACAGAAATAATTGTATCGACTTCCAAAAGGATG 43410 30 100.0 35 .............................. TTGATTAGTTCGGAGTATTCTGGTGACGTCGTGAT 43345 30 100.0 36 .............................. TTCAATAATTATGATAGCCAATTTAAAACGCAAGCG 43279 30 100.0 36 .............................. AAAACTGGGGAAGTCAAAACGAATGCCGTGGAAGAA 43213 30 100.0 35 .............................. GCAAGCGGCTGGACAGGTAAGAATATGTACGTGCG 43148 30 100.0 34 .............................. GAGGATATGCTGACAACAATTGACATGAAAAATA 43084 30 100.0 37 .............................. CATTAACGTCCGCTAAGATTGCCGCAATCAATACATC 43017 30 100.0 36 .............................. GTGTCTGAACAAGATGCTAATGACATTGAAGTAGCA 42951 30 100.0 36 .............................. ACGAAAACCTGAAAGAACGCCAGCAACGAATTAGAA 42885 30 100.0 34 .............................. TGAAGAAACTGGCTTTGAGAATTGCAATTGTTAG 42821 30 100.0 35 .............................. GCTTCTAATAATACTGGCAAGATTTGAATTATACC 42756 30 100.0 36 .............................. TTGCATGTCTTTACTTGAGTCGTGGTTACCTTTCAC 42690 30 100.0 34 .............................. GTCATTGCAGCTACATAAACAACTCTTGCGCTAT 42626 30 100.0 35 .............................. TCGGCAAGCGGCAGTAGCCAGCGCGAACTATACTT 42561 30 100.0 37 .............................. TCCACAACGGGACGCCTGACGTTAAAGTAGTACAGCG 42494 30 96.7 36 .........C.................... TGGGCAGGTGACGAGGGACAAGAAGAAAAATACAGT 42428 30 100.0 36 .............................. TCGCTTAAATAAGCTCCAGCGGCCTGATAATCTCCT 42362 30 100.0 36 .............................. ATGTTCCTCGGTATTTTGAATAATATCGTGAAACAA 42296 30 96.7 27 ........................A..... TAGGAGAAGGGCGCACTTATACACCCT Deletion [42240] 42239 30 73.3 0 ......CC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 98.7 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCCGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATACATTGGTACTAAAGGGTTTAAGCCTGTTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTCCGTAGCCAGTACACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAAGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //