Array 1 283800-283028 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTJ01000001.1 Ligilactobacillus salivarius strain NT62_5 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 283799 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [283793] 283722 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 283647 36 100.0 38 .................................... CACCAGTTGAAGACAAGACAGATGAAATTACACTTGAT 283573 36 100.0 36 .................................... AACAAAGCCAGGTAGAGAAAAGATTATGGAGTAAGT 283501 36 100.0 41 .................................... TAATTGAAGCACAACCTCTTAATACCTCGACAAAATCAATT 283424 36 100.0 37 .................................... CTTGAATTAGTCAATTTAACTGTAGTCCCCTCGCACG 283351 36 100.0 35 .................................... TATTTGCTTATTGCGATATGTAATATATAATACAG 283280 36 100.0 36 .................................... AAAGTCAGTTGTTAAAGGTTTCTAATTAACAGGAGG 283208 36 100.0 37 .................................... GATTAACCTAATAAAATCTAACAAAATTAAGAGGAGG 283135 36 100.0 36 .................................... AAGTTTGTGAAATCTCAAAAATAAAGGCTTTTAAGA 283063 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 99.0 38 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : ATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTTTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAGTAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 50033-47435 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTJ01000006.1 Ligilactobacillus salivarius strain NT62_5 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 50032 36 100.0 30 .................................... TCTTTGGCAATGGTTCTGTGACACCCGCAA 49966 36 100.0 30 .................................... ATTTGAGCCATTAGATTACTCCTTTCTCAA 49900 36 100.0 30 .................................... GATGAAAAAATAAATGAAGCCGTTAAAGAA 49834 36 100.0 30 .................................... TGTGGGGCTTTGGATTGGAGTTGCCTATCA 49768 36 100.0 30 .................................... GTTGAAGAAGCAATTTGCGAATACTTAAAT 49702 36 100.0 30 .................................... TACGAAGAAATCATCAGGCATGGAAAAACT 49636 36 100.0 30 .................................... TACATATATCTTTTTGTTTCTTTATCGTAA 49570 36 100.0 30 .................................... GTTTGTTACTTGTAAACTATCGATCTCACT 49504 36 100.0 30 .................................... TAATCTTCTTGTGTAAAATAGTTTACTCTA 49438 36 100.0 30 .................................... CTTACCTGCGACAACCTTTTGAGTTCGATT 49372 36 100.0 30 .................................... TTTAGAAAAAATAAGCGGGTGAATTTTTGA 49306 36 100.0 30 .................................... CAGCTATTTTAGTAAAAAAATTAGGAATTA 49240 36 100.0 30 .................................... TCGTCTGTTGCTTGTTCGTATACCTCCTCG 49174 36 100.0 30 .................................... AGACAGCATAAAGGATTATAGGAGCGTTGC 49108 36 100.0 30 .................................... GCTAATTTGTCAGAAGCAATCACAGAACTA 49042 36 100.0 30 .................................... TAGATGATATCGAATAAATGTATTAACCTA 48976 36 100.0 30 .................................... TATTAAGCACTAATCTAATTAGTGTTTAAT 48910 36 100.0 30 .................................... ATGAAAGAAGAAACTTATACAATGAATGGT 48844 36 100.0 30 .................................... GCCCAGAAGTTGAATATAATAACTTATTTA 48778 36 100.0 30 .................................... TAATGTCTTTAGATTTAAGCCCTTCTTTTC 48712 36 100.0 30 .................................... TTAGTAGATTGATTGTATGTCCCTGTAATA 48646 36 100.0 30 .................................... AAGATGCTTTAAACAATATTCCTAACGGTA 48580 36 100.0 30 .................................... CATTGGTCAGATATTTCAATCTAAAACACT 48514 36 100.0 30 .................................... GCAACGCTCCTATAATCCTTTATACTGTCT 48448 36 100.0 30 .................................... TTTAAAGCCTTATGAGCAACAGGAAGATCT 48382 36 100.0 30 .................................... TCTGCTAGTCCATACTCATAAGCTAGGCTT 48316 36 100.0 30 .................................... ATTATGACGTACCAACTGTAGCTCCAACAG 48250 36 100.0 30 .................................... CCAACCAAGACTTCATACTCATGAGCATGC 48184 36 100.0 30 .................................... ACAACAAATGTTAGCAGTAGCTGACTTACA 48118 36 100.0 30 .................................... ATGAACAAATTCAAGAGTATGGTTCAATTA 48052 36 100.0 30 .................................... GGTGTTGGTGTATCTGGATTTGTCTTATCA 47986 36 100.0 30 .................................... ATCAAGTAAGGAGGAATTGGCTAATGTCAT 47920 36 100.0 30 .................................... GCTAATCTATCAGAAGTAATTTCAGAGCTA 47854 36 100.0 30 .................................... CAGATGAAAAATTACGTACGTTGGATAACG 47788 36 100.0 30 .................................... ACTCATCTCAATACTTTCAACATCAATTGC 47722 36 100.0 30 .................................... TCTTCTTCTATAAATTCTTGCTCTCTTTGA 47656 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47536 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47470 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 39 36 99.1 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //