Array 1 96555-93905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVWV010000014.1 Klebsiella pneumoniae strain COL17 14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96554 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 96493 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 96432 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 96371 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 96309 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 96248 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 96187 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 96126 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 96065 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 96004 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 95943 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 95882 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 95821 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 95760 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 95699 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 95638 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 95577 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 95516 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 95455 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 95394 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 95333 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 95272 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 95211 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 95150 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 95089 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95028 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 94967 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 94906 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 94845 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 94784 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 94723 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 94662 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 94601 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 94540 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 94479 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 94418 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94357 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94296 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94235 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94174 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94113 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94052 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 93991 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 93933 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5829-6708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVWV010000063.1 Klebsiella pneumoniae strain COL17 63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5829 29 100.0 32 ............................. ATTATCAGCCGTCGGTTTCCACCAGTCACGAA 5890 29 100.0 32 ............................. GGAATGTCCTTGATTATATAAAGGCTGTCAGT 5951 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 6012 29 100.0 32 ............................. TGGTGCTCTCAACCGTTACCCGCTGGCTGGAA 6073 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6134 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 6195 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 6256 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 6317 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6378 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6439 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 6500 28 93.1 32 ..........-..C............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 6560 28 93.1 32 ..........-..A............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6620 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 6681 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //