Array 1 60128-59882 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGT01000005.1 Roseburia intestinalis strain SNUG30017 scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 60127 34 100.0 37 .................................. TTGTTCAGTTAAACCGTAGCGCATTGGGTCACTTTTA 60056 34 100.0 39 .................................. TAATCTTTTTCTCCGGCTTCCGGCGGGATGCTGACTGTA 59983 34 88.2 35 .........A...T..T...G............. CCAGATGGGTTTGATTTTTCTTGCATCTTCCTGAA 59914 33 88.2 0 .................-.AG..........A.. | ========== ====== ====== ====== ================================== ======================================= ================== 4 34 94.1 37 TTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Left flank : TTTTCGGGTTCAGAAATCGGCATTTGAGGCGATGGTTACGGAAAATTTATATCGACGTTTGTTACATGATATTCCGGAGCTGATTGACCGTAGATCGGACAGCGTGAGAGTTTACAAAATAAGAGGTTATGGAGAAGTCAGCCTGTTTGGGGCAAGTCCTGAAATTAAAAATGAAGAAGTGATTATTATAGGGTAATATGACAAAAGATATATTATAAATACACTGGGCAGAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAATGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGGAGGATTGAATTTGAGGAAATATAATGATTTTGCTCCGATAGGCTTAAAATCAGGCTTTGAGAATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : CTTGAAAACCTGCCCCGGATAAATCAAATTAGGGTTTACTGAGATATAAGAACCCCGCTAAGGGGACAAAATGAGAATAAATTTTTACTAAATAACCATGCAGGAAAATTAAATCATTATTACGAAAGATGGAGATTATTATGAATCAGACGATATTGTTTACACCAGTGGGAGGAACCGACCCGATTTCATTAAATAATTATCATGATGGATCAATACTGCATATTTGCAGATTCTATAAACCGGATAAAGTCATTTTGTACATGTCAAAAGAGATGTTGGATTTTCAGGAGAAAGATGACAGGTATCGTTATTGTCTGGACCGTCTGGCAAAGATGCAGGATCGTCCCATGGTTTATGAGATCATAGAACGCCGGGAGCTTACCAGAGTACATGAATTTGATTACTTTTACGAGGATTTCAGGAAGGTGATCAGCTGTATATATGAGACGATGGATGAATCGGATACATTGCTTTTAAATGTGTCATCCGGTACACCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 62753-61874 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGT01000005.1 Roseburia intestinalis strain SNUG30017 scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 62752 36 100.0 34 .................................... TAGGAACAACAAAAGTAAACGGAGACATTGGGAA 62682 36 100.0 34 .................................... TATTAACAACACTGCTACTGAAAACATTTTTTTG 62612 36 100.0 33 .................................... CTGTTAATGTTTTTTTATTTGTGTGTAAAGTTT 62543 36 100.0 38 .................................... TAGTTGATTACCTTTTTCTTCCAGAAGTTTGATTTCCA 62469 36 100.0 35 .................................... CCTCATGCCCTATTTCATCCGACATACACCAATAC 62398 36 100.0 17 .................................... ACCACAGAATTATCTGT Deletion [62346] 62345 36 66.7 33 ..C.GC.CCT.TC..TTGA................. TAATCTCGGCTTTATACCGTAAATCTTCTGTAG TC [62333] 62274 36 100.0 35 .................................... TTGATGTGATTACTTTAATCATGGTTTTGTTCTCC 62203 36 100.0 35 .................................... GGTTACTATGTGTTAATTGTTACTAGGGTCTTTCG 62132 36 100.0 36 .................................... TGTTACATCGAGTTTGTAAGCTTTGTAGAAGTTTTC 62060 36 83.3 40 .........TA.........TGG......G...... TTGTCATTCATTTTCATAGGCTGTGCCTTATCCTGTACAA 61984 36 86.1 39 .........TA.........TGG............. CCCGTCGGGGAATGATCGGAGATTCTCACGTCGAAGCTG 61909 36 83.3 0 .....A...TA.........TGG............. | ========== ====== ====== ====== ==================================== ======================================== ================== 13 36 93.8 34 ATTGAGATAAGAGAACCCCGATAAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTGTGGATAATGTGTTTAAAAATACACTTGGAAAAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATGACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGGATGTTATACACCAGTTTGATATTGAGGTTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCCTGTGTTTTAGGAGGTGTAAGGGACAGT # Right flank : CTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATCTTCAGTAAGGGGACAAATAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAACCGTTTTCAGGTAAAGTACAAGGATGGAATGATAAAAAGTATTCCAGCAGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGAGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCCCATGTGAATGTGCAAAGACAGCGTATTCAGGCGGAAATTGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATTCGCAATCAGGTTGTTGTTTTGCGTAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCAG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGAACCCCGATAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //