Array 1 5405-5137 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUCQ01000015.1 Comamonas composti DSM 21721 G486DRAFT_scaffold00011.11_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5404 28 100.0 32 ............................ AATGGCAGGCCAGCGGCCTATTTTGAACAGGA 5344 28 100.0 33 ............................ GCAGGCTCCCTCGAAGAAACGCTCATGCTGCTT 5283 28 100.0 32 ............................ TGTGGCGCACCCTGCTAGCAAGACTAGCAATG 5223 28 100.0 32 ............................ ATGAAAGAGCACTACGCCATGGCGAACATCAA 5163 27 92.9 0 .......C................-... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 32 GTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : ATACTTGAAATATTAAAATTCCGATGAATAGAAGAGGGTAATAAGCGAAGGCAATAACTATCGATGTTAATCGGAAATTTTGCGCTTTTCTAATCATTAAATAAAAAATAGTCGATGCAGCTCCAATTGATAATACTAATTCCCATTGCAATATATAAGCATATGGGTCATCAATCATTAGGATGCTTAGAAATGGAATTTCTGCCTGATTCGCAATTTGCCTAATTTCACTCAACGACCTAACAGGTACCATTACTATGGTAAAAGCGAATAATGCAAGCCATCCTCTAATTCCATATAAGGCATGATTTTTTGCTTCATCCGCAGTAATTTTTTTCCACGTGCTCATGCTTTCATCCTCTTTGTCTTAGCAATTTGCTGGCTAAATGTATCAGGCTTGCCCCTTTTCTATTTCTACTTCTGTACTGAGAAAAAAGGTGCAGAGGGGACAAAGGGGAAATTCTGGAATTGTGGCATGCACTTGCGCGTGCTACGCTTCA # Right flank : GCGTGCCAAGCCTGCCACGCTCCTCGGCAAAGGAGCATGGTATGAGTGCATTTGATAGCGGATTTCGAATGGGCATGGGGGCCTTCCAGACGGCGCTTGACAATAAGCAGCGAGACGAGGAACTGGGCTGGAAGCGTGCCGACCGCGCGCGCGCCGAAGCGGATCGCGCGCGGGAAGATGAGGCGTGGGGGAACATCGAACGACCAGCAGTCGCTGCCCCTGTGGTCCCTGTTGATGGAAACACTCCTGGAGCGGCAATGTCGGCGGGAGGTTTGCGGACGTCAAGCGATGCACTGGCACAGCCTGCTGCGAAAGTGGGCAATGTACCAGGAGCGTCCACTATCGCAAGCCAAGGTTTGGGGGCCGGTGCACTGCCGCCACAGAGCCGAGCAGGCCAATTGCGTGCGCTGGAGGGACTTGCAATCGCACGCCGTGACGCATCCGGCCTTGAGCGTCTGGGGGCAGTACGTCAGGCTGCGGATGAAGACGAGTTCATTGCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5090-4583 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUCQ01000050.1 Comamonas composti DSM 21721 G486DRAFT_scaffold00041.41_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5089 28 96.4 32 ......................T..... AAAGTCAGGCCAGCGGCCAATTTTGAACAGGA 5029 28 96.4 32 ......................T..... AGCGCCTGGCGTACCTGTGATGATCGTGATCA 4969 28 100.0 32 ............................ AGTTCAGCCCAAATTGTAGAGAGATACTGAAG 4909 28 100.0 32 ............................ TTGCTCATCCAGGGCCTTGATCTGCTGGTAGA 4849 28 100.0 32 ............................ GAGCAAGACCGCTTCGACGACATCACCAGTCA 4789 28 100.0 32 ............................ TGAGGGCGTCGGTGCTTTCGTGGCCCGCGCGC 4729 28 100.0 32 ............................ CTGGGCTACAGCAGCAAGGACCACGGCACGAT 4669 28 96.4 32 ...........................G CTGTCGGCCCGGGCACCAGGTCGCAGTGATGG 4609 27 78.6 0 .C..CT................TT-... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CGTG # Right flank : GCCCGCTCTCCCTGGATGAGTACGGGCATGCGGTGCGCTGCAGCAGGGGCTGGCTGCGCCCAATGGCAAAGTCATTTGGCATAAGGGTCTTGAAAGCCCAGCTCCAGCATGATGGCGGTTTCGTAGGCTTCCATTTCCTCGGCGTCCTGCTCACTGGTTTCGTGGTCCCAGCCTTGGGCGTGCAGGGTGCCGTGGACCAGCAGGTGGGCGTAGTGCTCCTGCAGGCTTTTGTTTTGCTCCAAGGCTTCGCGCTCGACCACGGGCGCGCAGAGCACGAGGTCGGCCATGACGCTCGGCTCCTGCTGGTAGTCGAAGGTCAGCACATTGGTGGCGTAGTCCTTTTTGCGGTACTCGCGGTTCAGTTGCCGGCCTTCCTCGGCGTCGACGATGCGCACGGTGATCTCCGCGTCCACGGCCAGCGCATGGCGTATCCAGCGCGCGACTTTGGTGCGCGGCAGCTGGGTGCGGTGCTCGGCTGCTTCGGCAAAGCGCGCGAATTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37642-39650 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386976.1 Comamonas composti DSM 21721 G486DRAFT_scaffold00027.27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37642 28 100.0 32 ............................ ATCGGCAGCGGCGCGGGCGGTGTGACAGAGAT 37702 28 100.0 32 ............................ GAGTGCGGCGCCAACCGGGAGCTGCACAAGGT 37762 28 100.0 33 ............................ CACTGGCAGCAGCCTCCTCCAGCTCTCGACGAA 37823 28 100.0 32 ............................ ATGACGTAGGTCATGTTGTCGGACAGCCCGAG 37883 28 100.0 32 ............................ AATGCTGCGGCCATCGATGTCAGTGACGTGGT 37943 28 100.0 32 ............................ ACAACGACTACAAAGAACGCAGCTGGTGAGGT 38003 28 100.0 32 ............................ TACACCCTTCAAAGTGTATAGACCAGTAGCAT 38063 28 100.0 32 ............................ TCAGGCGCAGGCGCCGGAGCATGTCGCAGCTC 38123 28 100.0 32 ............................ GCGCTGCAGATCTTCGGCAGGGCCAGTGGGGC 38183 28 100.0 32 ............................ ACGTCTGCGTCGCTGCATGCCGCAAGCGCCAT 38243 28 96.4 32 .......................G.... TTTGCACACCTCGATGGCGCCGCCCGTGTTGT 38303 28 100.0 32 ............................ CAGGCGTGCCCGGACCAAACCCCTGGGACCCG 38363 28 100.0 32 ............................ ACCGCCGCCCGCGCCGAAAATTCGTCCGCCAG 38423 28 100.0 32 ............................ TGCAGCGTGAACGGGCCAGGCTGGACAAATGG 38483 28 100.0 32 ............................ TTCTCAGTGCTGATCGTCTCGCTTCGCACCTT 38543 28 100.0 32 ............................ AGGCAGATATGCCGCAACGCCCGTAGCAAGGC 38603 28 100.0 32 ............................ AACAGCCTTTGCCTCCTCCAGTTGAGCATAGA 38663 28 100.0 32 ............................ GCAAGGAAGCGCTGAAGACGGTGCCCGAGCTC 38723 28 100.0 32 ............................ GGCTTTTGAAAGCGTCAAAATTCATAGCAAAA 38783 28 100.0 32 ............................ TGCAGCGGAATCCGGCTGGGGCGTCCGATCAA 38843 28 100.0 32 ............................ AGATTCGCAAGGATCGCGACGATTACGAGTGC 38903 28 100.0 32 ............................ TTCAAGAGCCCTGCGGCAAGCGAGCCACGGCC 38963 28 100.0 32 ............................ AGCCTGCAGGAGCTGCTGGAAGGCTTGGACGC 39023 28 100.0 32 ............................ GATTCTGAAAATCGGTGAGTTTGCGGCCGCAG 39083 28 100.0 32 ............................ GGATCCTGACTTTGCTGCGAGTGCCCAGGCCC 39143 28 100.0 32 ............................ CAAAATTTGGAGCATCAGCCGTCCAGTAGGCG 39203 28 100.0 32 ............................ GCACCTCCAATGGCGGCAGCGACTTTCATTGC 39263 28 100.0 32 ............................ GCGAAAAAGCCCGGGGAAGTGCGTTACGTGCT 39323 28 100.0 32 ............................ TGGGCACGCAGTCCTTCTTCGCTCTGGCGAAT 39383 28 100.0 32 ............................ TATGACGCCTGCGTTTTCGGGTTGGGGGGTTG 39443 28 100.0 32 ............................ TGTTGAGTTCACTCCCGCTACTCTGGCCGCAA 39503 28 100.0 32 ............................ AGTTGGAAGACCTGGAGCACAAGGCTGAGTAC 39563 28 100.0 32 ............................ TGCAAGCAACTGACGATCACCAACAACACGGG 39623 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.9 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1299-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUCQ01000059.1 Comamonas composti DSM 21721 G486DRAFT_scaffold00050.50_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1298 28 100.0 32 ............................ TGATCAGGCGGGGCGAGTTTACACAACTGGAA 1238 28 100.0 32 ............................ TGCAGCGCGAGAACCCCAAGCAGCAGACGCTG 1178 28 100.0 32 ............................ AGGAGGACAAGTCAGATTCCGCGAACGGTGAC 1118 28 96.4 32 .....G...................... AATCATCGAAATCCTCAACAAGCACAGCCAAC 1058 28 100.0 32 ............................ GCATCACCCAGGCCGATCAGCTTGTGGACACC 998 28 100.0 32 ............................ TGGTCAGGTGCGAGCACGCCTGGCAGGACCGT 938 28 100.0 32 ............................ TTGCCCAAACGAGGGGAAGAGATAAGCCGCAG 878 28 100.0 33 ............................ TCAATGTGGCCGTGATGGCGCCGACGTTTCCTC 817 28 100.0 32 ............................ CATCGAAACGGCACCGGCCAGCTCGCCGGCTT 757 28 100.0 32 ............................ ATTGCTGGTCGGACAACGACTTGAGCGATGCA 697 28 100.0 32 ............................ CTGCCTTTCTTTTGTACCGGGCCCCTAGATTC 637 28 100.0 33 ............................ AAAGACTATGAGGATGCGCCAAACGAGTCCAAT 576 28 100.0 32 ............................ AGTCCCAGAACGCCACCAGACCGAGTCCCGCC 516 28 100.0 32 ............................ CCAACCCTCGGTAGCGTGGTGGTCTTTGGCAT 456 28 100.0 32 ............................ AGTAGCTGCGCCGCAAGCTCGCCGTTTCCATC 396 28 100.0 32 ............................ GATACCAGCCGAACTCGCAGCAGCTCCGCTGT 336 28 100.0 33 ............................ GCCCATGCCAAGGCCACTCATCATCCCCTGGAC 275 28 100.0 32 ............................ ATATCAGCCTCGAATAGTGAAGCGCACCGCCG 215 28 100.0 32 ............................ CTGGCTGATGGAAACGGCGAGCTTGCGGCGCA 155 28 100.0 32 ............................ AACATGGCGTCCCAGACGCGCTCTATGTCATC 95 28 100.0 32 ............................ TCCCTGGTGCTTCGGCGTCAGGGAGGCTTTTT 35 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : ACAAAG # Right flank : ACGGACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUCQ01000060.1 Comamonas composti DSM 21721 G486DRAFT_scaffold00051.51_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 ............................ GATGAACAAGCGCTTCATCATTTCGTGCCACAC 68 28 100.0 32 ............................ AGCGCGGTGACAAGAACCCTTGCGACAAAACT 128 28 100.0 32 ............................ TCGATTGCGACTGGCACATTCAAGATCCGGCG 188 28 100.0 32 ............................ TTGCCGCCGATCTTGCCGGCACCGTCCAGGAC 248 28 100.0 31 ............................ AAGTGGCGCAGTGCTGGATTTCGTTGTGAAT 307 28 100.0 32 ............................ ATGACCCACTCGCCACTCGGAGCTCGCCAAAC 367 28 100.0 32 ............................ TGACCTGCTCCTCCACAGTCGTGCCGCAGCGT 427 28 100.0 33 ............................ GCCCGCGCAGCCGGGTCGCTGTCTCTGTTTTCG 488 28 100.0 33 ............................ ATTCCCCCGCTGTGTTCCAAAGTGAACTATGAA 549 28 100.0 33 ............................ CTGTGAAATCCTCCCATGACAGCTCAACAACCT 610 28 100.0 32 ............................ GTGGGCTTATCGGGTATCCGCACGTATGTCTT 670 28 100.0 32 ............................ GCTAGATGTGGCCGCAGCTTTGCTGCAAGAAA 730 28 100.0 32 ............................ ACGGGCGACCGCTCGGCAGCGGCGACCACGGG 790 28 100.0 32 ............................ TGAACGAAACCCAATCCGAAGTTATCGCCAAA 850 28 100.0 32 ............................ GTAACCCTCCGTTTCCCAATACGGCGGATCAA 910 28 100.0 32 ............................ GGCACAGTTGCAAGACGTTGAGTGCGACGACA 970 28 100.0 32 ............................ AAGTCCTTGTACAGCATGTCCTCGCACTGCTC 1030 28 100.0 32 ............................ AATACGGCGGGTCCAGGTAGAAAAGCGTGTGC 1090 28 100.0 32 ............................ GTATTGCGCAAGTACTCGCAAGCCCCAAGGGC 1150 28 96.4 32 ......................T..... AGTCCTTGAAAGTCGTGCCTTTCGCGGCGTGG 1210 28 96.4 32 ......................T..... AAAGTCAGGCCAGCGGCCAATTTTGAACAGGA 1270 28 96.4 0 ......................T..... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : GTCACAG # Right flank : AG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1239-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUCQ01000061.1 Comamonas composti DSM 21721 G486DRAFT_scaffold00052.52_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1238 28 100.0 33 ............................ GATGAACAAGCGCTTCATCATTTCGTGCCACAC 1177 28 100.0 32 ............................ AGCGCGGTGACAAGAACCCTTGCGACAAAACT 1117 28 100.0 32 ............................ TCGATTGCGACTGGCACATTCAAGATCCGGCG 1057 28 100.0 32 ............................ TTGCCGCCGATCTTGCCGGCACCGTCCAGGAC 997 28 100.0 31 ............................ AAGTGGCGCAGTGCTGGATTTCGTTGTGAAT 938 28 100.0 32 ............................ ATGACCCACTCGCCACTCGGAGCTCGCCAAAC 878 28 100.0 32 ............................ TGACCTGCTCCTCCACAGTCGTGCCGCAGCGT 818 28 100.0 33 ............................ GCCCGCGCAGCCGGGTCGCTGTCTCTGTTTTCG 757 28 100.0 33 ............................ ATTCCCCCGCTGTGTTCCAAAGTGAACTATGAA 696 28 100.0 33 ............................ CTGTGAAATCCTCCCATGACAGCTCAACAACCT 635 28 100.0 32 ............................ GTGGGCTTATCGGGTATCCGCACGTATGTCTT 575 28 100.0 32 ............................ GCTAGATGTGGCCGCAGCTTTGCTGCAAGAAA 515 28 100.0 32 ............................ ACGGGCGACCGCTCGGCAGCGGCGACCACGGG 455 28 100.0 32 ............................ TGAACGAAACCCAATCCGAAGTTATCGCCAAA 395 28 100.0 32 ............................ GTAACCCTCCGTTTCCCAATACGGCGGATCAA 335 28 100.0 32 ............................ GGCACAGTTGCAAGACGTTGAGTGCGACGACA 275 28 100.0 32 ............................ AAGTCCTTGTACAGCATGTCCTCGCACTGCTC 215 28 100.0 32 ............................ AATACGGCGGGTCCAGGTAGAAAAGCGTGTGC 155 28 100.0 32 ............................ GTATTGCGCAAGTACTCGCAAGCCCCAAGGGC 95 28 96.4 32 ......................T..... AGTCCTTGAAAGTCGTGCCTTTCGCGGCGTGG 35 28 96.4 0 ......................T..... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : GTCAC # Right flank : AAAAGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1229 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUCQ01000062.1 Comamonas composti DSM 21721 G486DRAFT_scaffold00053.53_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ ATGGCGAGAGGTGTGCACTGCGGTCGTGCGCT 61 28 100.0 32 ............................ TCGATGACCGTGCGAGCGACCTGCACCTGCTC 121 28 100.0 32 ............................ CTGCGTCACAGCCTGCAGGCGCGCGGCACGCG 181 28 100.0 33 ............................ CAGTACCGGAATCCAGGCTGGACACGCACCTGC 242 28 100.0 32 ............................ TTGTGCCGCGTCGGCATCTGCGCAGCCGGGCA 302 28 100.0 32 ............................ CTATGTAGTCATTGCCCACGCGCTCGTACGTT 362 28 100.0 32 ............................ AGGAGCGAAAGCGGGCCGCGCTACACGCCAGG 422 28 100.0 32 ............................ CAGACGCGGCGACCCCAGCCTGCCAGGGCCAG 482 28 100.0 32 ............................ GAAGTCGCCCAGGACCGAGGACAGCAAAGCGA 542 28 100.0 32 ............................ AGTCCTTTGTCGTGACCTTGGGAAACTCCATA 602 28 100.0 32 ............................ ACGGCTCAGGTCATTGAGTGACTGCTGAAACC 662 28 100.0 32 ............................ GGGTATGTCTGCGGCCTTGAGCTGGTCCACGA 722 28 100.0 32 ............................ CGCTCGGCGTCCGTGAGCGCTGCGGCATCGAC 782 28 100.0 32 ............................ CACGGCCACATTGGCGTTCTGGCCGCCCTTTT 842 28 100.0 32 ............................ TTACCCGCATCAGCGGGCGCGGCGCCTTCCTT 902 28 100.0 32 ............................ AGGCTCGCGCGCAATCCCGGGAGGCTCGCACT 962 28 100.0 32 ............................ ACCGGGTCCTTGTATTTGACGATGACTTCATT 1022 28 100.0 32 ............................ AGGTGTTTGAAGTGTGGCTGCCACCGTAATAT 1082 28 100.0 32 ............................ AGCCACGTTTTCGACTGCAGTAAGCACCCGAA 1142 28 100.0 32 ............................ GATCAGACCGCCCTCGCCCTTGTTTGCCGCCG 1202 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 33 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : | # Right flank : ACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //